RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011 View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2012-09-24

AUTHORS

Robert J. Robbins, Guy Cochrane, Neil Davies, Peter Dawyndt, Renzo Kottmann, Leonard Krishtalka, Norman Morrison, Éamonn Ó Tuama, Inigo San Gil, John Wooley

ABSTRACT

At the GSC11 meeting (4-6 April 2011, Hinxton, England, the GSC's genomic biodiversity working group (GBWG) developed an initial model for a data management testbed at the interface of biodiversity with genomics and metagenomics. With representatives of the Global Biodiversity Information Facility (GBIF) participating, it was agreed that the most useful course of action would be for GBIF to collaborate with the GSC in its ongoing GBWG workshops to achieve common goals around interoperability/data integration across (meta)-genomic and species level data. It was determined that a quick comparison should be made of the contents of the Darwin Core (DwC) and the GSC data checklists, with a goal of determining their degree of overlap and compatibility. An ad-hoc task group lead by Renzo Kottman and Peter Dawyndt undertook an initial comparison between the Darwin Core (DwC) standard used by the Global Biodiversity Information Facility (GBIF) and the MIxS checklists put forward by the Genomic Standards Consortium (GSC). A term-by-term comparison showed that DwC and GSC concepts complement each other far more than they compete with each other. Because the preliminary analysis done at this meeting was based on expertise with GSC standards, but not with DwC standards, the group recommended that a joint meeting of DwC and GSC experts be convened as soon as possible to continue this joint assessment and to propose additional work going forward. More... »

PAGES

153-158

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.4056/sigs.3146509

DOI

http://dx.doi.org/10.4056/sigs.3146509

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1000573170

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/23451293


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150 schema:name Global Biodiversity Information Facility, GBIF Secretariat, Copenhagen, Denmark
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152 https://www.grid.ac/institutes/grid.5342.0 schema:alternateName Ghent University
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