Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T) View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-10-01

AUTHORS

Yun-juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina Del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Konstantinos Mavromatis, Konstantinos Liolios, Thomas Brettin, Anne Fiebig, Manfred Rohde, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

ABSTRACT

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project. More... »

PAGES

97-111

References to SciGraph publications

  • 2007-11. Complete genome sequence of the myxobacterium Sorangium cellulosum in NATURE BIOTECHNOLOGY
  • 2000-05. Gene Ontology: tool for the unification of biology in NATURE GENETICS
  • 2009-09-24. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T) in STANDARDS IN GENOMIC SCIENCES
  • 2010-01-28. Complete genome sequence of Streptosporangium roseum type strain (NI 9100T) in STANDARDS IN GENOMIC SCIENCES
  • 2010-01-28. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison in STANDARDS IN GENOMIC SCIENCES
  • 2010-01-28. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T) in STANDARDS IN GENOMIC SCIENCES
  • 2009-12. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea in NATURE
  • 2010-06. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes in NATURE METHODS
  • 2010-12. Prodigal: prokaryotic gene recognition and translation initiation site identification in BMC BIOINFORMATICS
  • 2008-05. The minimum information about a genome sequence (MIGS) specification in NATURE BIOTECHNOLOGY
  • 2010-01-28. Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs in STANDARDS IN GENOMIC SCIENCES
  • 2009-07-20. Complete genome sequence of Kytococcus sedentarius type strain (541T) in STANDARDS IN GENOMIC SCIENCES
  • 2009. How Many Bootstrap Replicates Are Necessary? in RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY
  • 2010-10-27. Complete genome sequence of ‘Thermobaculum terrenum’ type strain (YNP1T) in STANDARDS IN GENOMIC SCIENCES
  • 2011-12-23. Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T) in STANDARDS IN GENOMIC SCIENCES
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.4056/sigs.2114901

    DOI

    http://dx.doi.org/10.4056/sigs.2114901

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1043131441

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22180814


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA", 
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Chang", 
            "givenName": "Yun-juan", 
            "id": "sg:person.0612715174.70", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612715174.70"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA", 
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Land", 
            "givenName": "Miriam", 
            "id": "sg:person.01115346474.60", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01115346474.60"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA", 
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Hauser", 
            "givenName": "Loren", 
            "id": "sg:person.01200425336.30", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200425336.30"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Los Alamos National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.148313.c", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Chertkov", 
            "givenName": "Olga", 
            "id": "sg:person.01031253666.47", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01031253666.47"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Del Rio", 
            "givenName": "Tijana Glavina", 
            "id": "sg:person.01214220734.63", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01214220734.63"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Nolan", 
            "givenName": "Matt", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Copeland", 
            "givenName": "Alex", 
            "id": "sg:person.0630621252.13", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630621252.13"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tice", 
            "givenName": "Hope", 
            "id": "sg:person.01212022424.85", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01212022424.85"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Cheng", 
            "givenName": "Jan-Fang", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lucas", 
            "givenName": "Susan", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Los Alamos National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.148313.c", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Han", 
            "givenName": "Cliff", 
            "id": "sg:person.0732722676.07", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0732722676.07"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Los Alamos National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.148313.c", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Goodwin", 
            "givenName": "Lynne", 
            "id": "sg:person.0644576263.72", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0644576263.72"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pitluck", 
            "givenName": "Sam", 
            "id": "sg:person.01171663552.38", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01171663552.38"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ivanova", 
            "givenName": "Natalia", 
            "id": "sg:person.01263456163.47", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01263456163.47"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ovchinikova", 
            "givenName": "Galina", 
            "id": "sg:person.0617250647.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617250647.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Pati", 
            "givenName": "Amrita", 
            "id": "sg:person.01104755463.41", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01104755463.41"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Lawrence Berkeley National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.184769.5", 
              "name": [
                "Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Chen", 
            "givenName": "Amy", 
            "id": "sg:person.0617364774.21", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617364774.21"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Lawrence Berkeley National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.184769.5", 
              "name": [
                "Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Palaniappan", 
            "givenName": "Krishna", 
            "id": "sg:person.01340023266.09", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340023266.09"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mavromatis", 
            "givenName": "Konstantinos", 
            "id": "sg:person.01267447732.36", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267447732.36"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Liolios", 
            "givenName": "Konstantinos", 
            "id": "sg:person.01253041104.20", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01253041104.20"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Los Alamos National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.148313.c", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Brettin", 
            "givenName": "Thomas", 
            "id": "sg:person.01265534462.01", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265534462.01"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures", 
              "id": "https://www.grid.ac/institutes/grid.420081.f", 
              "name": [
                "DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Fiebig", 
            "givenName": "Anne", 
            "id": "sg:person.01325626741.38", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01325626741.38"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Helmholtz Centre for Infection Research", 
              "id": "https://www.grid.ac/institutes/grid.7490.a", 
              "name": [
                "HZI \u2013 Helmholtz Centre for Infection Research, Braunschweig, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Rohde", 
            "givenName": "Manfred", 
            "id": "sg:person.0601712356.28", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0601712356.28"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures", 
              "id": "https://www.grid.ac/institutes/grid.420081.f", 
              "name": [
                "DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Abt", 
            "givenName": "Birte", 
            "id": "sg:person.01056755353.73", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01056755353.73"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures", 
              "id": "https://www.grid.ac/institutes/grid.420081.f", 
              "name": [
                "DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "G\u00f6ker", 
            "givenName": "Markus", 
            "id": "sg:person.0646712066.27", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0646712066.27"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Los Alamos National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.148313.c", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Detter", 
            "givenName": "John C.", 
            "id": "sg:person.01316221203.46", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316221203.46"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Woyke", 
            "givenName": "Tanja", 
            "id": "sg:person.01366555074.19", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366555074.19"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bristow", 
            "givenName": "James", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Davis", 
              "id": "https://www.grid.ac/institutes/grid.27860.3b", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "University of California Davis Genome Center, Davis, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Eisen", 
            "givenName": "Jonathan A.", 
            "id": "sg:person.01234416460.36", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01234416460.36"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Lawrence Berkeley National Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.184769.5", 
              "name": [
                "Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Markowitz", 
            "givenName": "Victor", 
            "id": "sg:person.01060725650.12", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060725650.12"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Queensland", 
              "id": "https://www.grid.ac/institutes/grid.1003.2", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA", 
                "Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Hugenholtz", 
            "givenName": "Philip", 
            "id": "sg:person.01055510700.73", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055510700.73"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Kyrpides", 
            "givenName": "Nikos C.", 
            "id": "sg:person.01230412614.56", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230412614.56"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Leibniz Institute DSMZ \u2013 German Collection of Microorganisms and Cell Cultures", 
              "id": "https://www.grid.ac/institutes/grid.420081.f", 
              "name": [
                "DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Klenk", 
            "givenName": "Hans-Peter", 
            "id": "sg:person.0764254156.05", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764254156.05"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Joint Genome Institute", 
              "id": "https://www.grid.ac/institutes/grid.451309.a", 
              "name": [
                "DOE Joint Genome Institute, Walnut Creek, California, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lapidus", 
            "givenName": "Alla", 
            "id": "sg:person.01165564600.78", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165564600.78"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.4056/sigs.541628", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003624158", 
              "https://doi.org/10.4056/sigs.541628"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.531120", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007539462", 
              "https://doi.org/10.4056/sigs.531120"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.17259", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010315638", 
              "https://doi.org/10.4056/sigs.17259"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1261/rna.2126203", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011000818"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1095-8312.2007.00864.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011205932"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt1354", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011257761", 
              "https://doi.org/10.1038/nbt1354"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-2958.2000.02197.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012560435"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.631049", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013472766", 
              "https://doi.org/10.4056/sigs.631049"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0022-2836(05)80360-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013618994"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08656", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013886837", 
              "https://doi.org/10.1038/nature08656"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08656", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013886837", 
              "https://doi.org/10.1038/nature08656"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nmeth.1457", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014321989", 
              "https://doi.org/10.1038/nmeth.1457"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.87.12.4576", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018027137"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/jb.00596-10", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019223601"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.601105", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019437989", 
              "https://doi.org/10.4056/sigs.601105"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/18.3.452", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021488500"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.syapm.2010.03.003", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023228186"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.1153107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023291066", 
              "https://doi.org/10.4056/sigs.1153107"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-3-642-02008-7_13", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024833761", 
              "https://doi.org/10.1007/978-3-642-02008-7_13"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-3-642-02008-7_13", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024833761", 
              "https://doi.org/10.1007/978-3-642-02008-7_13"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-11-119", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026423599", 
              "https://doi.org/10.1186/1471-2105-11-119"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0723-2020(89)80023-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030652176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0004207", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031445221"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.03006-05", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034568952"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026334", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037148423"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1108/eb046814", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037275209"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1099/00207713-30-1-225", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038280579"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt1360", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038439506", 
              "https://doi.org/10.1038/nbt1360"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btp393", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041253333"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.761", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041749371", 
              "https://doi.org/10.4056/sigs.761"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/75556", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044135237", 
              "https://doi.org/10.1038/75556"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/75556", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044135237", 
              "https://doi.org/10.1038/75556"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkp848", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045503771"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1128/aem.00132-06", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052716442"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.4056/sigs.2194987", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053602761", 
              "https://doi.org/10.4056/sigs.2194987"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/10635150802429642", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058369815"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1089/bio.2010.0029", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1059235188"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1099/ijs.0.018069-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060382805"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1099/ijs.0.03028-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060384258"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1099/ijs.0.65052-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060387744"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2011-10-01", 
        "datePublishedReg": "2011-10-01", 
        "description": "Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the  Genomic Encyclopedia of Bacteria and Archaea  project.", 
        "genre": "research_article", 
        "id": "sg:pub.10.4056/sigs.2114901", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.4111841", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1043441", 
            "issn": [
              "1944-3277"
            ], 
            "name": "Standards in Genomic Sciences", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "5"
          }
        ], 
        "name": "Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)", 
        "pagination": "97-111", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "cd7316e675ca47fdcba63c8ef6755fa05ea877c0d450313f766e59e1943f76b7"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "22180814"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101530505"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.4056/sigs.2114901"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1043131441"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.4056/sigs.2114901", 
          "https://app.dimensions.ai/details/publication/pub.1043131441"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T16:48", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8669_00000547.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236041/"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.4056/sigs.2114901'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.4056/sigs.2114901'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.4056/sigs.2114901'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.4056/sigs.2114901'


     

    This table displays all metadata directly associated to this object as RDF triples.

    445 TRIPLES      21 PREDICATES      65 URIs      20 LITERALS      9 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.4056/sigs.2114901 schema:about anzsrc-for:06
    2 anzsrc-for:0604
    3 schema:author N9f39b7fcf701491b82748889caf7af91
    4 schema:citation sg:pub.10.1007/978-3-642-02008-7_13
    5 sg:pub.10.1038/75556
    6 sg:pub.10.1038/nature08656
    7 sg:pub.10.1038/nbt1354
    8 sg:pub.10.1038/nbt1360
    9 sg:pub.10.1038/nmeth.1457
    10 sg:pub.10.1186/1471-2105-11-119
    11 sg:pub.10.4056/sigs.1153107
    12 sg:pub.10.4056/sigs.17259
    13 sg:pub.10.4056/sigs.2194987
    14 sg:pub.10.4056/sigs.531120
    15 sg:pub.10.4056/sigs.541628
    16 sg:pub.10.4056/sigs.601105
    17 sg:pub.10.4056/sigs.631049
    18 sg:pub.10.4056/sigs.761
    19 https://doi.org/10.1016/j.syapm.2010.03.003
    20 https://doi.org/10.1016/s0022-2836(05)80360-2
    21 https://doi.org/10.1016/s0723-2020(89)80023-2
    22 https://doi.org/10.1046/j.1365-2958.2000.02197.x
    23 https://doi.org/10.1073/pnas.87.12.4576
    24 https://doi.org/10.1080/10635150802429642
    25 https://doi.org/10.1089/bio.2010.0029
    26 https://doi.org/10.1093/bioinformatics/18.3.452
    27 https://doi.org/10.1093/bioinformatics/btp393
    28 https://doi.org/10.1093/nar/gkp848
    29 https://doi.org/10.1093/oxfordjournals.molbev.a026334
    30 https://doi.org/10.1099/00207713-30-1-225
    31 https://doi.org/10.1099/ijs.0.018069-0
    32 https://doi.org/10.1099/ijs.0.03028-0
    33 https://doi.org/10.1099/ijs.0.65052-0
    34 https://doi.org/10.1108/eb046814
    35 https://doi.org/10.1111/j.1095-8312.2007.00864.x
    36 https://doi.org/10.1128/aem.00132-06
    37 https://doi.org/10.1128/aem.03006-05
    38 https://doi.org/10.1128/jb.00596-10
    39 https://doi.org/10.1261/rna.2126203
    40 https://doi.org/10.1371/journal.pone.0004207
    41 schema:datePublished 2011-10-01
    42 schema:datePublishedReg 2011-10-01
    43 schema:description Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
    44 schema:genre research_article
    45 schema:inLanguage en
    46 schema:isAccessibleForFree true
    47 schema:isPartOf N3acdeb69afe24eb1bba5c996450c5379
    48 Nb2d7164bb1554b34b8b5cf97cdd92ab2
    49 sg:journal.1043441
    50 schema:name Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
    51 schema:pagination 97-111
    52 schema:productId N0af90050b25a41f2aef905e412063ef8
    53 N28046e8c3e7346e6b7b9fa39ff3e6bc5
    54 Nab0f819124dd481dbc8d59c47fda0c01
    55 Nf9dbe81413c24fc5a1ce7c4d59283cde
    56 Nff78b5de5f964cc6b28e8b6aafeec79f
    57 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043131441
    58 https://doi.org/10.4056/sigs.2114901
    59 schema:sdDatePublished 2019-04-10T16:48
    60 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    61 schema:sdPublisher Ncdcc24dd82d641c49ea3cac45ba2a680
    62 schema:url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236041/
    63 sgo:license sg:explorer/license/
    64 sgo:sdDataset articles
    65 rdf:type schema:ScholarlyArticle
    66 N02502051c41b4f419e5de83100fa6083 rdf:first sg:person.01253041104.20
    67 rdf:rest N9871b631cf92485a96e5f930fa79f74e
    68 N0af90050b25a41f2aef905e412063ef8 schema:name pubmed_id
    69 schema:value 22180814
    70 rdf:type schema:PropertyValue
    71 N0e2b606d45454a77b267e22e60582dda rdf:first sg:person.01055510700.73
    72 rdf:rest N9af03fe2dc7c491a85c683984cf9dd5b
    73 N0f9639ff107f44f3852f00563cf72960 rdf:first sg:person.0617250647.34
    74 rdf:rest Na05f0b3043d64873a8d3253b288c563a
    75 N12d6a778debb4ec8be14ad7c5e1c79c9 rdf:first sg:person.0630621252.13
    76 rdf:rest N4348d6a2917b4f419b3f43f17bd4ae8c
    77 N15858d64f5bd43c9bbbb2d5084aeb1ad rdf:first sg:person.0732722676.07
    78 rdf:rest N6a0570fb7c204081a61252baa9a63d96
    79 N17a51bb120f74537b7e4671707058198 rdf:first sg:person.01267447732.36
    80 rdf:rest N02502051c41b4f419e5de83100fa6083
    81 N21954068edc94c39b48f5fbfa5da18fe rdf:first sg:person.0601712356.28
    82 rdf:rest N51b1f30f2a5c42fdb910dfee2170a129
    83 N28046e8c3e7346e6b7b9fa39ff3e6bc5 schema:name dimensions_id
    84 schema:value pub.1043131441
    85 rdf:type schema:PropertyValue
    86 N3acdeb69afe24eb1bba5c996450c5379 schema:issueNumber 1
    87 rdf:type schema:PublicationIssue
    88 N4348d6a2917b4f419b3f43f17bd4ae8c rdf:first sg:person.01212022424.85
    89 rdf:rest Neabf013bb6534e9fa2881e1695b1dff1
    90 N51b1f30f2a5c42fdb910dfee2170a129 rdf:first sg:person.01056755353.73
    91 rdf:rest N6543ab42a08e46909b018225992960f2
    92 N52825f3d18794c83be95892f4989cdc2 rdf:first sg:person.01263456163.47
    93 rdf:rest N0f9639ff107f44f3852f00563cf72960
    94 N5b00a958030f4c0f96b14bb12aab80cf schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    95 schema:familyName Nolan
    96 schema:givenName Matt
    97 rdf:type schema:Person
    98 N6543ab42a08e46909b018225992960f2 rdf:first sg:person.0646712066.27
    99 rdf:rest Naff347cba1be41f792048f4c1f0825f4
    100 N676103762fc7446497954111e2b75d50 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    101 schema:familyName Bristow
    102 schema:givenName James
    103 rdf:type schema:Person
    104 N699144b519db4c599ad2418e3d51bed6 rdf:first sg:person.01171663552.38
    105 rdf:rest N52825f3d18794c83be95892f4989cdc2
    106 N6a0570fb7c204081a61252baa9a63d96 rdf:first sg:person.0644576263.72
    107 rdf:rest N699144b519db4c599ad2418e3d51bed6
    108 N7396ac2ded3a475dae1e59d6fb49b512 rdf:first sg:person.0617364774.21
    109 rdf:rest Ne9a056f1bea04b9a9f8f93f3ebcc3d38
    110 N7e5df68801414c1880549abc15e07443 rdf:first N676103762fc7446497954111e2b75d50
    111 rdf:rest Nbef27095ac6144d199251ad205ea747a
    112 N8c6e6f715ea043a1bddc8103282c9d6f rdf:first N5b00a958030f4c0f96b14bb12aab80cf
    113 rdf:rest N12d6a778debb4ec8be14ad7c5e1c79c9
    114 N92ba925c41f24e3b8a98ff35af8a2cb8 rdf:first sg:person.01214220734.63
    115 rdf:rest N8c6e6f715ea043a1bddc8103282c9d6f
    116 N9432c5ed94c840a3b11f050ec240de32 rdf:first sg:person.01325626741.38
    117 rdf:rest N21954068edc94c39b48f5fbfa5da18fe
    118 N9871b631cf92485a96e5f930fa79f74e rdf:first sg:person.01265534462.01
    119 rdf:rest N9432c5ed94c840a3b11f050ec240de32
    120 N9af03fe2dc7c491a85c683984cf9dd5b rdf:first sg:person.01230412614.56
    121 rdf:rest Ne6475f61c47a4cd4b431815916a821da
    122 N9f39b7fcf701491b82748889caf7af91 rdf:first sg:person.0612715174.70
    123 rdf:rest Na5a79256ea2643ff878760dd34f96612
    124 Na05f0b3043d64873a8d3253b288c563a rdf:first sg:person.01104755463.41
    125 rdf:rest N7396ac2ded3a475dae1e59d6fb49b512
    126 Na1e3cbf6604a4e29ab8c3fc16653cf89 rdf:first sg:person.01165564600.78
    127 rdf:rest rdf:nil
    128 Na5a0a464ffdc42d7a00cc29bdcdd4d1c rdf:first Na99027c570964f32adb3686ed8dc062e
    129 rdf:rest N15858d64f5bd43c9bbbb2d5084aeb1ad
    130 Na5a79256ea2643ff878760dd34f96612 rdf:first sg:person.01115346474.60
    131 rdf:rest Nca1fb2f0ce0244578ff134022ccf0754
    132 Na5ea0bfba6ec4dd9ab8525d0a785b101 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    133 schema:familyName Cheng
    134 schema:givenName Jan-Fang
    135 rdf:type schema:Person
    136 Na99027c570964f32adb3686ed8dc062e schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    137 schema:familyName Lucas
    138 schema:givenName Susan
    139 rdf:type schema:Person
    140 Nab0f819124dd481dbc8d59c47fda0c01 schema:name nlm_unique_id
    141 schema:value 101530505
    142 rdf:type schema:PropertyValue
    143 Naff347cba1be41f792048f4c1f0825f4 rdf:first sg:person.01316221203.46
    144 rdf:rest Nd26d99d561bc4ae5860f327a54c348f9
    145 Nb2d7164bb1554b34b8b5cf97cdd92ab2 schema:volumeNumber 5
    146 rdf:type schema:PublicationVolume
    147 Nbef27095ac6144d199251ad205ea747a rdf:first sg:person.01234416460.36
    148 rdf:rest Nd243a354069347d4b3925df87cf86a05
    149 Nca1fb2f0ce0244578ff134022ccf0754 rdf:first sg:person.01200425336.30
    150 rdf:rest Nde7fa89150954d5eb32f4ec88937eef6
    151 Ncdcc24dd82d641c49ea3cac45ba2a680 schema:name Springer Nature - SN SciGraph project
    152 rdf:type schema:Organization
    153 Nd243a354069347d4b3925df87cf86a05 rdf:first sg:person.01060725650.12
    154 rdf:rest N0e2b606d45454a77b267e22e60582dda
    155 Nd26d99d561bc4ae5860f327a54c348f9 rdf:first sg:person.01366555074.19
    156 rdf:rest N7e5df68801414c1880549abc15e07443
    157 Nde7fa89150954d5eb32f4ec88937eef6 rdf:first sg:person.01031253666.47
    158 rdf:rest N92ba925c41f24e3b8a98ff35af8a2cb8
    159 Ne6475f61c47a4cd4b431815916a821da rdf:first sg:person.0764254156.05
    160 rdf:rest Na1e3cbf6604a4e29ab8c3fc16653cf89
    161 Ne9a056f1bea04b9a9f8f93f3ebcc3d38 rdf:first sg:person.01340023266.09
    162 rdf:rest N17a51bb120f74537b7e4671707058198
    163 Neabf013bb6534e9fa2881e1695b1dff1 rdf:first Na5ea0bfba6ec4dd9ab8525d0a785b101
    164 rdf:rest Na5a0a464ffdc42d7a00cc29bdcdd4d1c
    165 Nf9dbe81413c24fc5a1ce7c4d59283cde schema:name doi
    166 schema:value 10.4056/sigs.2114901
    167 rdf:type schema:PropertyValue
    168 Nff78b5de5f964cc6b28e8b6aafeec79f schema:name readcube_id
    169 schema:value cd7316e675ca47fdcba63c8ef6755fa05ea877c0d450313f766e59e1943f76b7
    170 rdf:type schema:PropertyValue
    171 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    172 schema:name Biological Sciences
    173 rdf:type schema:DefinedTerm
    174 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    175 schema:name Genetics
    176 rdf:type schema:DefinedTerm
    177 sg:grant.4111841 http://pending.schema.org/fundedItem sg:pub.10.4056/sigs.2114901
    178 rdf:type schema:MonetaryGrant
    179 sg:journal.1043441 schema:issn 1944-3277
    180 schema:name Standards in Genomic Sciences
    181 rdf:type schema:Periodical
    182 sg:person.01031253666.47 schema:affiliation https://www.grid.ac/institutes/grid.148313.c
    183 schema:familyName Chertkov
    184 schema:givenName Olga
    185 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01031253666.47
    186 rdf:type schema:Person
    187 sg:person.01055510700.73 schema:affiliation https://www.grid.ac/institutes/grid.1003.2
    188 schema:familyName Hugenholtz
    189 schema:givenName Philip
    190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055510700.73
    191 rdf:type schema:Person
    192 sg:person.01056755353.73 schema:affiliation https://www.grid.ac/institutes/grid.420081.f
    193 schema:familyName Abt
    194 schema:givenName Birte
    195 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01056755353.73
    196 rdf:type schema:Person
    197 sg:person.01060725650.12 schema:affiliation https://www.grid.ac/institutes/grid.184769.5
    198 schema:familyName Markowitz
    199 schema:givenName Victor
    200 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060725650.12
    201 rdf:type schema:Person
    202 sg:person.01104755463.41 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    203 schema:familyName Pati
    204 schema:givenName Amrita
    205 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01104755463.41
    206 rdf:type schema:Person
    207 sg:person.01115346474.60 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    208 schema:familyName Land
    209 schema:givenName Miriam
    210 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01115346474.60
    211 rdf:type schema:Person
    212 sg:person.01165564600.78 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    213 schema:familyName Lapidus
    214 schema:givenName Alla
    215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165564600.78
    216 rdf:type schema:Person
    217 sg:person.01171663552.38 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    218 schema:familyName Pitluck
    219 schema:givenName Sam
    220 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01171663552.38
    221 rdf:type schema:Person
    222 sg:person.01200425336.30 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    223 schema:familyName Hauser
    224 schema:givenName Loren
    225 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200425336.30
    226 rdf:type schema:Person
    227 sg:person.01212022424.85 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    228 schema:familyName Tice
    229 schema:givenName Hope
    230 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01212022424.85
    231 rdf:type schema:Person
    232 sg:person.01214220734.63 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    233 schema:familyName Del Rio
    234 schema:givenName Tijana Glavina
    235 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01214220734.63
    236 rdf:type schema:Person
    237 sg:person.01230412614.56 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    238 schema:familyName Kyrpides
    239 schema:givenName Nikos C.
    240 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230412614.56
    241 rdf:type schema:Person
    242 sg:person.01234416460.36 schema:affiliation https://www.grid.ac/institutes/grid.27860.3b
    243 schema:familyName Eisen
    244 schema:givenName Jonathan A.
    245 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01234416460.36
    246 rdf:type schema:Person
    247 sg:person.01253041104.20 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    248 schema:familyName Liolios
    249 schema:givenName Konstantinos
    250 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01253041104.20
    251 rdf:type schema:Person
    252 sg:person.01263456163.47 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    253 schema:familyName Ivanova
    254 schema:givenName Natalia
    255 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01263456163.47
    256 rdf:type schema:Person
    257 sg:person.01265534462.01 schema:affiliation https://www.grid.ac/institutes/grid.148313.c
    258 schema:familyName Brettin
    259 schema:givenName Thomas
    260 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01265534462.01
    261 rdf:type schema:Person
    262 sg:person.01267447732.36 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    263 schema:familyName Mavromatis
    264 schema:givenName Konstantinos
    265 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267447732.36
    266 rdf:type schema:Person
    267 sg:person.01316221203.46 schema:affiliation https://www.grid.ac/institutes/grid.148313.c
    268 schema:familyName Detter
    269 schema:givenName John C.
    270 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01316221203.46
    271 rdf:type schema:Person
    272 sg:person.01325626741.38 schema:affiliation https://www.grid.ac/institutes/grid.420081.f
    273 schema:familyName Fiebig
    274 schema:givenName Anne
    275 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01325626741.38
    276 rdf:type schema:Person
    277 sg:person.01340023266.09 schema:affiliation https://www.grid.ac/institutes/grid.184769.5
    278 schema:familyName Palaniappan
    279 schema:givenName Krishna
    280 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340023266.09
    281 rdf:type schema:Person
    282 sg:person.01366555074.19 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    283 schema:familyName Woyke
    284 schema:givenName Tanja
    285 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366555074.19
    286 rdf:type schema:Person
    287 sg:person.0601712356.28 schema:affiliation https://www.grid.ac/institutes/grid.7490.a
    288 schema:familyName Rohde
    289 schema:givenName Manfred
    290 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0601712356.28
    291 rdf:type schema:Person
    292 sg:person.0612715174.70 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    293 schema:familyName Chang
    294 schema:givenName Yun-juan
    295 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612715174.70
    296 rdf:type schema:Person
    297 sg:person.0617250647.34 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    298 schema:familyName Ovchinikova
    299 schema:givenName Galina
    300 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617250647.34
    301 rdf:type schema:Person
    302 sg:person.0617364774.21 schema:affiliation https://www.grid.ac/institutes/grid.184769.5
    303 schema:familyName Chen
    304 schema:givenName Amy
    305 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617364774.21
    306 rdf:type schema:Person
    307 sg:person.0630621252.13 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
    308 schema:familyName Copeland
    309 schema:givenName Alex
    310 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630621252.13
    311 rdf:type schema:Person
    312 sg:person.0644576263.72 schema:affiliation https://www.grid.ac/institutes/grid.148313.c
    313 schema:familyName Goodwin
    314 schema:givenName Lynne
    315 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0644576263.72
    316 rdf:type schema:Person
    317 sg:person.0646712066.27 schema:affiliation https://www.grid.ac/institutes/grid.420081.f
    318 schema:familyName Göker
    319 schema:givenName Markus
    320 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0646712066.27
    321 rdf:type schema:Person
    322 sg:person.0732722676.07 schema:affiliation https://www.grid.ac/institutes/grid.148313.c
    323 schema:familyName Han
    324 schema:givenName Cliff
    325 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0732722676.07
    326 rdf:type schema:Person
    327 sg:person.0764254156.05 schema:affiliation https://www.grid.ac/institutes/grid.420081.f
    328 schema:familyName Klenk
    329 schema:givenName Hans-Peter
    330 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0764254156.05
    331 rdf:type schema:Person
    332 sg:pub.10.1007/978-3-642-02008-7_13 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024833761
    333 https://doi.org/10.1007/978-3-642-02008-7_13
    334 rdf:type schema:CreativeWork
    335 sg:pub.10.1038/75556 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044135237
    336 https://doi.org/10.1038/75556
    337 rdf:type schema:CreativeWork
    338 sg:pub.10.1038/nature08656 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013886837
    339 https://doi.org/10.1038/nature08656
    340 rdf:type schema:CreativeWork
    341 sg:pub.10.1038/nbt1354 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011257761
    342 https://doi.org/10.1038/nbt1354
    343 rdf:type schema:CreativeWork
    344 sg:pub.10.1038/nbt1360 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038439506
    345 https://doi.org/10.1038/nbt1360
    346 rdf:type schema:CreativeWork
    347 sg:pub.10.1038/nmeth.1457 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014321989
    348 https://doi.org/10.1038/nmeth.1457
    349 rdf:type schema:CreativeWork
    350 sg:pub.10.1186/1471-2105-11-119 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026423599
    351 https://doi.org/10.1186/1471-2105-11-119
    352 rdf:type schema:CreativeWork
    353 sg:pub.10.4056/sigs.1153107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023291066
    354 https://doi.org/10.4056/sigs.1153107
    355 rdf:type schema:CreativeWork
    356 sg:pub.10.4056/sigs.17259 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010315638
    357 https://doi.org/10.4056/sigs.17259
    358 rdf:type schema:CreativeWork
    359 sg:pub.10.4056/sigs.2194987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053602761
    360 https://doi.org/10.4056/sigs.2194987
    361 rdf:type schema:CreativeWork
    362 sg:pub.10.4056/sigs.531120 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007539462
    363 https://doi.org/10.4056/sigs.531120
    364 rdf:type schema:CreativeWork
    365 sg:pub.10.4056/sigs.541628 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003624158
    366 https://doi.org/10.4056/sigs.541628
    367 rdf:type schema:CreativeWork
    368 sg:pub.10.4056/sigs.601105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019437989
    369 https://doi.org/10.4056/sigs.601105
    370 rdf:type schema:CreativeWork
    371 sg:pub.10.4056/sigs.631049 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013472766
    372 https://doi.org/10.4056/sigs.631049
    373 rdf:type schema:CreativeWork
    374 sg:pub.10.4056/sigs.761 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041749371
    375 https://doi.org/10.4056/sigs.761
    376 rdf:type schema:CreativeWork
    377 https://doi.org/10.1016/j.syapm.2010.03.003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023228186
    378 rdf:type schema:CreativeWork
    379 https://doi.org/10.1016/s0022-2836(05)80360-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013618994
    380 rdf:type schema:CreativeWork
    381 https://doi.org/10.1016/s0723-2020(89)80023-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030652176
    382 rdf:type schema:CreativeWork
    383 https://doi.org/10.1046/j.1365-2958.2000.02197.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1012560435
    384 rdf:type schema:CreativeWork
    385 https://doi.org/10.1073/pnas.87.12.4576 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018027137
    386 rdf:type schema:CreativeWork
    387 https://doi.org/10.1080/10635150802429642 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369815
    388 rdf:type schema:CreativeWork
    389 https://doi.org/10.1089/bio.2010.0029 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059235188
    390 rdf:type schema:CreativeWork
    391 https://doi.org/10.1093/bioinformatics/18.3.452 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021488500
    392 rdf:type schema:CreativeWork
    393 https://doi.org/10.1093/bioinformatics/btp393 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041253333
    394 rdf:type schema:CreativeWork
    395 https://doi.org/10.1093/nar/gkp848 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045503771
    396 rdf:type schema:CreativeWork
    397 https://doi.org/10.1093/oxfordjournals.molbev.a026334 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037148423
    398 rdf:type schema:CreativeWork
    399 https://doi.org/10.1099/00207713-30-1-225 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038280579
    400 rdf:type schema:CreativeWork
    401 https://doi.org/10.1099/ijs.0.018069-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060382805
    402 rdf:type schema:CreativeWork
    403 https://doi.org/10.1099/ijs.0.03028-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060384258
    404 rdf:type schema:CreativeWork
    405 https://doi.org/10.1099/ijs.0.65052-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060387744
    406 rdf:type schema:CreativeWork
    407 https://doi.org/10.1108/eb046814 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037275209
    408 rdf:type schema:CreativeWork
    409 https://doi.org/10.1111/j.1095-8312.2007.00864.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1011205932
    410 rdf:type schema:CreativeWork
    411 https://doi.org/10.1128/aem.00132-06 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052716442
    412 rdf:type schema:CreativeWork
    413 https://doi.org/10.1128/aem.03006-05 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034568952
    414 rdf:type schema:CreativeWork
    415 https://doi.org/10.1128/jb.00596-10 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019223601
    416 rdf:type schema:CreativeWork
    417 https://doi.org/10.1261/rna.2126203 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011000818
    418 rdf:type schema:CreativeWork
    419 https://doi.org/10.1371/journal.pone.0004207 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031445221
    420 rdf:type schema:CreativeWork
    421 https://www.grid.ac/institutes/grid.1003.2 schema:alternateName University of Queensland
    422 schema:name Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
    423 DOE Joint Genome Institute, Walnut Creek, California, USA
    424 rdf:type schema:Organization
    425 https://www.grid.ac/institutes/grid.148313.c schema:alternateName Los Alamos National Laboratory
    426 schema:name DOE Joint Genome Institute, Walnut Creek, California, USA
    427 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA
    428 rdf:type schema:Organization
    429 https://www.grid.ac/institutes/grid.184769.5 schema:alternateName Lawrence Berkeley National Laboratory
    430 schema:name Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    431 rdf:type schema:Organization
    432 https://www.grid.ac/institutes/grid.27860.3b schema:alternateName University of California, Davis
    433 schema:name DOE Joint Genome Institute, Walnut Creek, California, USA
    434 University of California Davis Genome Center, Davis, California, USA
    435 rdf:type schema:Organization
    436 https://www.grid.ac/institutes/grid.420081.f schema:alternateName Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
    437 schema:name DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
    438 rdf:type schema:Organization
    439 https://www.grid.ac/institutes/grid.451309.a schema:alternateName Joint Genome Institute
    440 schema:name DOE Joint Genome Institute, Walnut Creek, California, USA
    441 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
    442 rdf:type schema:Organization
    443 https://www.grid.ac/institutes/grid.7490.a schema:alternateName Helmholtz Centre for Infection Research
    444 schema:name HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany
    445 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...