Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T) View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-10-01

AUTHORS

Yun-juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina Del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Konstantinos Mavromatis, Konstantinos Liolios, Thomas Brettin, Anne Fiebig, Manfred Rohde, Birte Abt, Markus Göker, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

ABSTRACT

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project. More... »

PAGES

97-111

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.4056/sigs.2114901

    DOI

    http://dx.doi.org/10.4056/sigs.2114901

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1043131441

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/22180814


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    436 https://www.grid.ac/institutes/grid.420081.f schema:alternateName Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures
    437 schema:name DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
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    439 https://www.grid.ac/institutes/grid.451309.a schema:alternateName Joint Genome Institute
    440 schema:name DOE Joint Genome Institute, Walnut Creek, California, USA
    441 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
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    443 https://www.grid.ac/institutes/grid.7490.a schema:alternateName Helmholtz Centre for Infection Research
    444 schema:name HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany
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