Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010

AUTHORS

Jack A. Gilbert, Folker Meyer, Dion Antonopoulos, Pavan Balaji, C. Titus Brown, Christopher T. Brown, Narayan Desai, Jonathan A Eisen, Dirk Evers, Dawn Field, Wu Feng, Daniel Huson, Janet Jansson, Rob Knight, James Knight, Eugene Kolker, Kostas Konstantindis, Joel Kostka, Nikos Kyrpides, Rachel Mackelprang, Alice McHardy, Christopher Quince, Jeroen Raes, Alexander Sczyrba, Ashley Shade, Rick Stevens

ABSTRACT

Between July 18(th) and 24(th) 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the microbial world using next-generation sequencing technologies. The meeting was entitled "Terabase Metagenomics" and was sponsored by the Institute for Computing in Science (ICiS) summer 2010 workshop program. The aim of the workshop was to explore the fundamental questions relating to microbial ecology that could be addressed using advances in sequencing potential. Technological advances in next-generation sequencing platforms such as the Illumina HiSeq 2000 can generate in excess of 250 billion base pairs of genetic information in 8 days. Thus, the generation of a trillion base pairs of genetic information is becoming a routine matter. The main outcome from this meeting was the birth of a concept and practical approach to exploring microbial life on earth, the Earth Microbiome Project (EMP). Here we briefly describe the highlights of this meeting and provide an overview of the EMP concept and how it can be applied to exploration of the microbiome of each ecosystem on this planet. More... »

PAGES

243-248

Identifiers

URI

http://scigraph.springernature.com/pub.10.4056/sigs.1433550

DOI

http://dx.doi.org/10.4056/sigs.1433550

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1015489166

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21304727


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Chicago", 
          "id": "https://www.grid.ac/institutes/grid.170205.1", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA", 
            "Department of Ecology and Evolution, University of Chicago, Chicago, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gilbert", 
        "givenName": "Jack A.", 
        "id": "sg:person.0727626545.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0727626545.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Meyer", 
        "givenName": "Folker", 
        "id": "sg:person.0623154651.88", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0623154651.88"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Antonopoulos", 
        "givenName": "Dion", 
        "id": "sg:person.013475240207.67", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013475240207.67"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Balaji", 
        "givenName": "Pavan", 
        "id": "sg:person.012353313353.42", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012353313353.42"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Michigan State University", 
          "id": "https://www.grid.ac/institutes/grid.17088.36", 
          "name": [
            "College of Engineering, Michigan State University, East Lansing, MI, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brown", 
        "givenName": "C. Titus", 
        "id": "sg:person.0722460673.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0722460673.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Florida", 
          "id": "https://www.grid.ac/institutes/grid.15276.37", 
          "name": [
            "Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brown", 
        "givenName": "Christopher T.", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Desai", 
        "givenName": "Narayan", 
        "id": "sg:person.01341475501.33", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341475501.33"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Joint Genome Institute", 
          "id": "https://www.grid.ac/institutes/grid.451309.a", 
          "name": [
            "Department of Evolution and Ecology, University of California, Davis, USA", 
            "DOE Joint Genome Institute, Walnut Creek, CA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Eisen", 
        "givenName": "Jonathan A", 
        "id": "sg:person.01234416460.36", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01234416460.36"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Illumina (United Kingdom)", 
          "id": "https://www.grid.ac/institutes/grid.434747.7", 
          "name": [
            "Illumina, Saffron Walden, U.K."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Evers", 
        "givenName": "Dirk", 
        "id": "sg:person.01066132265.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01066132265.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "NERC Centre for Ecology and Hydrology, Oxfordshire,U.K."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Field", 
        "givenName": "Dawn", 
        "id": "sg:person.01223211445.99", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01223211445.99"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wake Forest University", 
          "id": "https://www.grid.ac/institutes/grid.241167.7", 
          "name": [
            "Department of Computer Science and Department of Electrical & Computer Engineering, Virginia Tech, Blacksburg, VA USA", 
            "Department of Cancer Biology and Translational Science Institute, Wake Forest University Winston-Salem, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Feng", 
        "givenName": "Wu", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of T\u00fcbingen", 
          "id": "https://www.grid.ac/institutes/grid.10392.39", 
          "name": [
            "Center for Bioinformatics ZBIT, T\u00fcbingen University,T\u00fcbingen, Germany,"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Huson", 
        "givenName": "Daniel", 
        "id": "sg:person.0766300744.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0766300744.30"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Lawrence Berkeley National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.184769.5", 
          "name": [
            "Lawrence Berkeley National Laboratory, Earth Sciences Division Berkeley, CA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jansson", 
        "givenName": "Janet", 
        "id": "sg:person.0777235637.90", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0777235637.90"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California Los Angeles", 
          "id": "https://www.grid.ac/institutes/grid.19006.3e", 
          "name": [
            "Department of Chemistry and Biochemistry, Boulder, CO, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Knight", 
        "givenName": "Rob", 
        "id": "sg:person.016311745377.96", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Roche-454, Branford, CT USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Knight", 
        "givenName": "James", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Seattle Children's Hospital", 
          "id": "https://www.grid.ac/institutes/grid.240741.4", 
          "name": [
            "Seattle Children\u2019s Hospital, Seattle, WA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kolker", 
        "givenName": "Eugene", 
        "id": "sg:person.01340257142.13", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340257142.13"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Georgia Institute of Technology", 
          "id": "https://www.grid.ac/institutes/grid.213917.f", 
          "name": [
            "School of Civil and Environmental Engineering and School of Biology, Georgia Institute of Technology, Atlanta, GA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Konstantindis", 
        "givenName": "Kostas", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Florida State University", 
          "id": "https://www.grid.ac/institutes/grid.255986.5", 
          "name": [
            "The Florida State University, Tallahassee, FL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kostka", 
        "givenName": "Joel", 
        "id": "sg:person.01354405576.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01354405576.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Joint Genome Institute", 
          "id": "https://www.grid.ac/institutes/grid.451309.a", 
          "name": [
            "DOE Joint Genome Institute, Walnut Creek, CA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kyrpides", 
        "givenName": "Nikos", 
        "id": "sg:person.01230412614.56", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230412614.56"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Joint Genome Institute", 
          "id": "https://www.grid.ac/institutes/grid.451309.a", 
          "name": [
            "DOE Joint Genome Institute, Walnut Creek, CA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mackelprang", 
        "givenName": "Rachel", 
        "id": "sg:person.01037011266.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037011266.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Max Planck Institute for Informatics", 
          "id": "https://www.grid.ac/institutes/grid.419528.3", 
          "name": [
            "Department of Algorithmic Bioinformatics, Heinrich-Heine University, D\u00fcsseldorf, Germany.", 
            "Max-Planck-Institut fur Informatik, Max-Planck Research Group for Computational Genomics and Epidemiology, Saarbr\u00fccken, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "McHardy", 
        "givenName": "Alice", 
        "id": "sg:person.01041701425.67", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041701425.67"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Glasgow", 
          "id": "https://www.grid.ac/institutes/grid.8756.c", 
          "name": [
            "Department of Civil Engineering, University of Glasgow, Glasgow U.K."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Quince", 
        "givenName": "Christopher", 
        "id": "sg:person.01124434037.65", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124434037.65"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Vrije Universiteit Brussel", 
          "id": "https://www.grid.ac/institutes/grid.8767.e", 
          "name": [
            "Department of Molecular and Cellular Interactions, VIB - University of Brussels, Brussels, Belgium."
          ], 
          "type": "Organization"
        }, 
        "familyName": "Raes", 
        "givenName": "Jeroen", 
        "id": "sg:person.0765515705.86", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0765515705.86"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Joint Genome Institute", 
          "id": "https://www.grid.ac/institutes/grid.451309.a", 
          "name": [
            "DOE Joint Genome Institute, Walnut Creek, CA USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sczyrba", 
        "givenName": "Alexander", 
        "id": "sg:person.0630775541.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630775541.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Yale University", 
          "id": "https://www.grid.ac/institutes/grid.47100.32", 
          "name": [
            "Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shade", 
        "givenName": "Ashley", 
        "id": "sg:person.01113271556.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01113271556.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Argonne National Laboratory", 
          "id": "https://www.grid.ac/institutes/grid.187073.a", 
          "name": [
            "Argonne National Laboratory, Argonne, IL USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stevens", 
        "givenName": "Rick", 
        "id": "sg:person.0707416220.12", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/nbt1360", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038439506", 
          "https://doi.org/10.1038/nbt1360"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.4056/aigs.1443528", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051440192", 
          "https://doi.org/10.4056/aigs.1443528"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2010", 
    "datePublishedReg": "2010-01-01", 
    "description": "Between July 18(th) and 24(th) 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the microbial world using next-generation sequencing technologies. The meeting was entitled \"Terabase Metagenomics\" and was sponsored by the Institute for Computing in Science (ICiS) summer 2010 workshop program. The aim of the workshop was to explore the fundamental questions relating to microbial ecology that could be addressed using advances in sequencing potential. Technological advances in next-generation sequencing platforms such as the Illumina HiSeq 2000 can generate in excess of 250 billion base pairs of genetic information in 8 days. Thus, the generation of a trillion base pairs of genetic information is becoming a routine matter. The main outcome from this meeting was the birth of a concept and practical approach to exploring microbial life on earth, the Earth Microbiome Project (EMP). Here we briefly describe the highlights of this meeting and provide an overview of the EMP concept and how it can be applied to exploration of the microbiome of each ecosystem on this planet.", 
    "genre": "research_article", 
    "id": "sg:pub.10.4056/sigs.1433550", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2772762", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1043441", 
        "issn": [
          "1944-3277"
        ], 
        "name": "Standards in Genomic Sciences", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "3"
      }
    ], 
    "name": "Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project", 
    "pagination": "243-248", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "49cca64012741e464efbcccd9f6bc55b8e94ce8e1a35906d34018c68fe97009d"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "21304727"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101530505"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.4056/sigs.1433550"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1015489166"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.4056/sigs.1433550", 
      "https://app.dimensions.ai/details/publication/pub.1015489166"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T17:37", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8672_00000546.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035311/"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.4056/sigs.1433550'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.4056/sigs.1433550'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.4056/sigs.1433550'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.4056/sigs.1433550'


 

This table displays all metadata directly associated to this object as RDF triples.

305 TRIPLES      21 PREDICATES      31 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.4056/sigs.1433550 schema:about anzsrc-for:06
2 anzsrc-for:0605
3 schema:author Nf7c61b9cd4584662a25cd8dd17d790fb
4 schema:citation sg:pub.10.1038/nbt1360
5 sg:pub.10.4056/aigs.1443528
6 schema:datePublished 2010
7 schema:datePublishedReg 2010-01-01
8 schema:description Between July 18(th) and 24(th) 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the microbial world using next-generation sequencing technologies. The meeting was entitled "Terabase Metagenomics" and was sponsored by the Institute for Computing in Science (ICiS) summer 2010 workshop program. The aim of the workshop was to explore the fundamental questions relating to microbial ecology that could be addressed using advances in sequencing potential. Technological advances in next-generation sequencing platforms such as the Illumina HiSeq 2000 can generate in excess of 250 billion base pairs of genetic information in 8 days. Thus, the generation of a trillion base pairs of genetic information is becoming a routine matter. The main outcome from this meeting was the birth of a concept and practical approach to exploring microbial life on earth, the Earth Microbiome Project (EMP). Here we briefly describe the highlights of this meeting and provide an overview of the EMP concept and how it can be applied to exploration of the microbiome of each ecosystem on this planet.
9 schema:genre research_article
10 schema:inLanguage en
11 schema:isAccessibleForFree true
12 schema:isPartOf N5c994de29456471fbda0d2b8560dfa95
13 N865f7f6c6436434ca528b9d468887a9b
14 sg:journal.1043441
15 schema:name Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project
16 schema:pagination 243-248
17 schema:productId N517b04d80c7e433da6a0062891aaa6e6
18 N84828d3e44c94f1aa11ababc8bef2773
19 N9a747b8dd1da4eaea029753550224591
20 Nd3cc5fdc38b048d39eb25e791f00672e
21 Nf3aa1b5c7e3b4c00b453ec6d9ff809f3
22 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015489166
23 https://doi.org/10.4056/sigs.1433550
24 schema:sdDatePublished 2019-04-10T17:37
25 schema:sdLicense https://scigraph.springernature.com/explorer/license/
26 schema:sdPublisher N22c84201ad014807b77cda241daf851b
27 schema:url http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035311/
28 sgo:license sg:explorer/license/
29 sgo:sdDataset articles
30 rdf:type schema:ScholarlyArticle
31 N05b7bf21e17e4a85b2bb6b79fe75c6f5 rdf:first N066ee31975e3458c812b046bbd2abd5f
32 rdf:rest N9721279e22d74ffcbd553521998b5b6e
33 N066ee31975e3458c812b046bbd2abd5f schema:affiliation https://www.grid.ac/institutes/grid.213917.f
34 schema:familyName Konstantindis
35 schema:givenName Kostas
36 rdf:type schema:Person
37 N099580dfaf7a41f8ba430e1e6182ee4b schema:name NERC Centre for Ecology and Hydrology, Oxfordshire,U.K.
38 rdf:type schema:Organization
39 N173d8d3f9b324a8aa672d16048e17c81 rdf:first sg:person.01066132265.37
40 rdf:rest N66d9a10661ca47fe9d6cf5c0aee32366
41 N22c84201ad014807b77cda241daf851b schema:name Springer Nature - SN SciGraph project
42 rdf:type schema:Organization
43 N25f17ae8a32b407bae9a44241fd50d4e rdf:first sg:person.01341475501.33
44 rdf:rest Nccfd595c67b845dc9a628550c4c50f80
45 N2839ac521002459284d3c8c3c1ec113d schema:affiliation https://www.grid.ac/institutes/grid.241167.7
46 schema:familyName Feng
47 schema:givenName Wu
48 rdf:type schema:Person
49 N33420fb4f2b34fe6850385b4fde0ad98 schema:affiliation https://www.grid.ac/institutes/grid.15276.37
50 schema:familyName Brown
51 schema:givenName Christopher T.
52 rdf:type schema:Person
53 N3348b815abd24520a1306185ac151565 rdf:first sg:person.01113271556.37
54 rdf:rest Nc8682a9f0b1f452da2ae69916218b002
55 N4039eb9fcc794d2c9c7d95f038b09212 rdf:first sg:person.0630775541.38
56 rdf:rest N3348b815abd24520a1306185ac151565
57 N46e11c1691bb4f1592db434146527c8b schema:name Roche-454, Branford, CT USA
58 rdf:type schema:Organization
59 N4b421dc40680478c9d43b65c8b1434b3 schema:affiliation N46e11c1691bb4f1592db434146527c8b
60 schema:familyName Knight
61 schema:givenName James
62 rdf:type schema:Person
63 N517b04d80c7e433da6a0062891aaa6e6 schema:name doi
64 schema:value 10.4056/sigs.1433550
65 rdf:type schema:PropertyValue
66 N545d987d3f8146fa9a3f8e548da2265e rdf:first sg:person.01041701425.67
67 rdf:rest N965a5f62f5e34865ab7f72e4daa803ed
68 N5c994de29456471fbda0d2b8560dfa95 schema:issueNumber 3
69 rdf:type schema:PublicationIssue
70 N66d9a10661ca47fe9d6cf5c0aee32366 rdf:first sg:person.01223211445.99
71 rdf:rest N799eaa6972d24323a63b3f5a8a789988
72 N799eaa6972d24323a63b3f5a8a789988 rdf:first N2839ac521002459284d3c8c3c1ec113d
73 rdf:rest Nad91084b34004c65bb316458229e78f3
74 N84828d3e44c94f1aa11ababc8bef2773 schema:name nlm_unique_id
75 schema:value 101530505
76 rdf:type schema:PropertyValue
77 N865f7f6c6436434ca528b9d468887a9b schema:volumeNumber 3
78 rdf:type schema:PublicationVolume
79 N965a5f62f5e34865ab7f72e4daa803ed rdf:first sg:person.01124434037.65
80 rdf:rest N9f43f868282641e19acf9bf532e26ff8
81 N9721279e22d74ffcbd553521998b5b6e rdf:first sg:person.01354405576.37
82 rdf:rest Na591c6ae60534711b23811cd82a93a92
83 N97f7fe417ae7453eb3e74cc14491bfbd rdf:first sg:person.013475240207.67
84 rdf:rest Ne475dc20bc2e443895b1199e713c474f
85 N9a747b8dd1da4eaea029753550224591 schema:name readcube_id
86 schema:value 49cca64012741e464efbcccd9f6bc55b8e94ce8e1a35906d34018c68fe97009d
87 rdf:type schema:PropertyValue
88 N9f43f868282641e19acf9bf532e26ff8 rdf:first sg:person.0765515705.86
89 rdf:rest N4039eb9fcc794d2c9c7d95f038b09212
90 Na591c6ae60534711b23811cd82a93a92 rdf:first sg:person.01230412614.56
91 rdf:rest Neddac06b93b94abc84c75430a5e17a52
92 Nad91084b34004c65bb316458229e78f3 rdf:first sg:person.0766300744.30
93 rdf:rest Ndd659fb5b9ba4f6fa7d2fef4223709ab
94 Nc5b8226f1e7b4fc5a06978bf985c22a0 rdf:first sg:person.0722460673.20
95 rdf:rest Ne0d335f3801c4f5b9522c87d588c4101
96 Nc6eb171142ec4a9ca185f75d5fb90c22 rdf:first sg:person.016311745377.96
97 rdf:rest Nec984c18876246618e530c6a1a268563
98 Nc8682a9f0b1f452da2ae69916218b002 rdf:first sg:person.0707416220.12
99 rdf:rest rdf:nil
100 Nccfd595c67b845dc9a628550c4c50f80 rdf:first sg:person.01234416460.36
101 rdf:rest N173d8d3f9b324a8aa672d16048e17c81
102 Ncde1ef4cb92042f8aefcb85b8826e6c9 rdf:first sg:person.01340257142.13
103 rdf:rest N05b7bf21e17e4a85b2bb6b79fe75c6f5
104 Nd3cc5fdc38b048d39eb25e791f00672e schema:name dimensions_id
105 schema:value pub.1015489166
106 rdf:type schema:PropertyValue
107 Ndd659fb5b9ba4f6fa7d2fef4223709ab rdf:first sg:person.0777235637.90
108 rdf:rest Nc6eb171142ec4a9ca185f75d5fb90c22
109 Ne0d335f3801c4f5b9522c87d588c4101 rdf:first N33420fb4f2b34fe6850385b4fde0ad98
110 rdf:rest N25f17ae8a32b407bae9a44241fd50d4e
111 Ne4228019a59d4528b3ebad9b9fe6e514 rdf:first sg:person.0623154651.88
112 rdf:rest N97f7fe417ae7453eb3e74cc14491bfbd
113 Ne475dc20bc2e443895b1199e713c474f rdf:first sg:person.012353313353.42
114 rdf:rest Nc5b8226f1e7b4fc5a06978bf985c22a0
115 Nec984c18876246618e530c6a1a268563 rdf:first N4b421dc40680478c9d43b65c8b1434b3
116 rdf:rest Ncde1ef4cb92042f8aefcb85b8826e6c9
117 Neddac06b93b94abc84c75430a5e17a52 rdf:first sg:person.01037011266.02
118 rdf:rest N545d987d3f8146fa9a3f8e548da2265e
119 Nf3aa1b5c7e3b4c00b453ec6d9ff809f3 schema:name pubmed_id
120 schema:value 21304727
121 rdf:type schema:PropertyValue
122 Nf7c61b9cd4584662a25cd8dd17d790fb rdf:first sg:person.0727626545.37
123 rdf:rest Ne4228019a59d4528b3ebad9b9fe6e514
124 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
125 schema:name Biological Sciences
126 rdf:type schema:DefinedTerm
127 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
128 schema:name Microbiology
129 rdf:type schema:DefinedTerm
130 sg:grant.2772762 http://pending.schema.org/fundedItem sg:pub.10.4056/sigs.1433550
131 rdf:type schema:MonetaryGrant
132 sg:journal.1043441 schema:issn 1944-3277
133 schema:name Standards in Genomic Sciences
134 rdf:type schema:Periodical
135 sg:person.01037011266.02 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
136 schema:familyName Mackelprang
137 schema:givenName Rachel
138 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037011266.02
139 rdf:type schema:Person
140 sg:person.01041701425.67 schema:affiliation https://www.grid.ac/institutes/grid.419528.3
141 schema:familyName McHardy
142 schema:givenName Alice
143 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01041701425.67
144 rdf:type schema:Person
145 sg:person.01066132265.37 schema:affiliation https://www.grid.ac/institutes/grid.434747.7
146 schema:familyName Evers
147 schema:givenName Dirk
148 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01066132265.37
149 rdf:type schema:Person
150 sg:person.01113271556.37 schema:affiliation https://www.grid.ac/institutes/grid.47100.32
151 schema:familyName Shade
152 schema:givenName Ashley
153 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01113271556.37
154 rdf:type schema:Person
155 sg:person.01124434037.65 schema:affiliation https://www.grid.ac/institutes/grid.8756.c
156 schema:familyName Quince
157 schema:givenName Christopher
158 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124434037.65
159 rdf:type schema:Person
160 sg:person.01223211445.99 schema:affiliation N099580dfaf7a41f8ba430e1e6182ee4b
161 schema:familyName Field
162 schema:givenName Dawn
163 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01223211445.99
164 rdf:type schema:Person
165 sg:person.01230412614.56 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
166 schema:familyName Kyrpides
167 schema:givenName Nikos
168 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01230412614.56
169 rdf:type schema:Person
170 sg:person.01234416460.36 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
171 schema:familyName Eisen
172 schema:givenName Jonathan A
173 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01234416460.36
174 rdf:type schema:Person
175 sg:person.012353313353.42 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
176 schema:familyName Balaji
177 schema:givenName Pavan
178 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012353313353.42
179 rdf:type schema:Person
180 sg:person.01340257142.13 schema:affiliation https://www.grid.ac/institutes/grid.240741.4
181 schema:familyName Kolker
182 schema:givenName Eugene
183 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340257142.13
184 rdf:type schema:Person
185 sg:person.01341475501.33 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
186 schema:familyName Desai
187 schema:givenName Narayan
188 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341475501.33
189 rdf:type schema:Person
190 sg:person.013475240207.67 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
191 schema:familyName Antonopoulos
192 schema:givenName Dion
193 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013475240207.67
194 rdf:type schema:Person
195 sg:person.01354405576.37 schema:affiliation https://www.grid.ac/institutes/grid.255986.5
196 schema:familyName Kostka
197 schema:givenName Joel
198 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01354405576.37
199 rdf:type schema:Person
200 sg:person.016311745377.96 schema:affiliation https://www.grid.ac/institutes/grid.19006.3e
201 schema:familyName Knight
202 schema:givenName Rob
203 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96
204 rdf:type schema:Person
205 sg:person.0623154651.88 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
206 schema:familyName Meyer
207 schema:givenName Folker
208 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0623154651.88
209 rdf:type schema:Person
210 sg:person.0630775541.38 schema:affiliation https://www.grid.ac/institutes/grid.451309.a
211 schema:familyName Sczyrba
212 schema:givenName Alexander
213 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630775541.38
214 rdf:type schema:Person
215 sg:person.0707416220.12 schema:affiliation https://www.grid.ac/institutes/grid.187073.a
216 schema:familyName Stevens
217 schema:givenName Rick
218 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0707416220.12
219 rdf:type schema:Person
220 sg:person.0722460673.20 schema:affiliation https://www.grid.ac/institutes/grid.17088.36
221 schema:familyName Brown
222 schema:givenName C. Titus
223 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0722460673.20
224 rdf:type schema:Person
225 sg:person.0727626545.37 schema:affiliation https://www.grid.ac/institutes/grid.170205.1
226 schema:familyName Gilbert
227 schema:givenName Jack A.
228 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0727626545.37
229 rdf:type schema:Person
230 sg:person.0765515705.86 schema:affiliation https://www.grid.ac/institutes/grid.8767.e
231 schema:familyName Raes
232 schema:givenName Jeroen
233 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0765515705.86
234 rdf:type schema:Person
235 sg:person.0766300744.30 schema:affiliation https://www.grid.ac/institutes/grid.10392.39
236 schema:familyName Huson
237 schema:givenName Daniel
238 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0766300744.30
239 rdf:type schema:Person
240 sg:person.0777235637.90 schema:affiliation https://www.grid.ac/institutes/grid.184769.5
241 schema:familyName Jansson
242 schema:givenName Janet
243 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0777235637.90
244 rdf:type schema:Person
245 sg:pub.10.1038/nbt1360 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038439506
246 https://doi.org/10.1038/nbt1360
247 rdf:type schema:CreativeWork
248 sg:pub.10.4056/aigs.1443528 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051440192
249 https://doi.org/10.4056/aigs.1443528
250 rdf:type schema:CreativeWork
251 https://www.grid.ac/institutes/grid.10392.39 schema:alternateName University of Tübingen
252 schema:name Center for Bioinformatics ZBIT, Tübingen University,Tübingen, Germany,
253 rdf:type schema:Organization
254 https://www.grid.ac/institutes/grid.15276.37 schema:alternateName University of Florida
255 schema:name Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA
256 rdf:type schema:Organization
257 https://www.grid.ac/institutes/grid.170205.1 schema:alternateName University of Chicago
258 schema:name Argonne National Laboratory, Argonne, IL USA
259 Department of Ecology and Evolution, University of Chicago, Chicago, USA
260 rdf:type schema:Organization
261 https://www.grid.ac/institutes/grid.17088.36 schema:alternateName Michigan State University
262 schema:name College of Engineering, Michigan State University, East Lansing, MI, USA
263 rdf:type schema:Organization
264 https://www.grid.ac/institutes/grid.184769.5 schema:alternateName Lawrence Berkeley National Laboratory
265 schema:name Lawrence Berkeley National Laboratory, Earth Sciences Division Berkeley, CA USA
266 rdf:type schema:Organization
267 https://www.grid.ac/institutes/grid.187073.a schema:alternateName Argonne National Laboratory
268 schema:name Argonne National Laboratory, Argonne, IL USA
269 rdf:type schema:Organization
270 https://www.grid.ac/institutes/grid.19006.3e schema:alternateName University of California Los Angeles
271 schema:name Department of Chemistry and Biochemistry, Boulder, CO, USA
272 rdf:type schema:Organization
273 https://www.grid.ac/institutes/grid.213917.f schema:alternateName Georgia Institute of Technology
274 schema:name School of Civil and Environmental Engineering and School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
275 rdf:type schema:Organization
276 https://www.grid.ac/institutes/grid.240741.4 schema:alternateName Seattle Children's Hospital
277 schema:name Seattle Children’s Hospital, Seattle, WA USA
278 rdf:type schema:Organization
279 https://www.grid.ac/institutes/grid.241167.7 schema:alternateName Wake Forest University
280 schema:name Department of Cancer Biology and Translational Science Institute, Wake Forest University Winston-Salem, USA
281 Department of Computer Science and Department of Electrical & Computer Engineering, Virginia Tech, Blacksburg, VA USA
282 rdf:type schema:Organization
283 https://www.grid.ac/institutes/grid.255986.5 schema:alternateName Florida State University
284 schema:name The Florida State University, Tallahassee, FL USA
285 rdf:type schema:Organization
286 https://www.grid.ac/institutes/grid.419528.3 schema:alternateName Max Planck Institute for Informatics
287 schema:name Department of Algorithmic Bioinformatics, Heinrich-Heine University, Düsseldorf, Germany.
288 Max-Planck-Institut fur Informatik, Max-Planck Research Group for Computational Genomics and Epidemiology, Saarbrücken, Germany
289 rdf:type schema:Organization
290 https://www.grid.ac/institutes/grid.434747.7 schema:alternateName Illumina (United Kingdom)
291 schema:name Illumina, Saffron Walden, U.K.
292 rdf:type schema:Organization
293 https://www.grid.ac/institutes/grid.451309.a schema:alternateName Joint Genome Institute
294 schema:name DOE Joint Genome Institute, Walnut Creek, CA USA
295 Department of Evolution and Ecology, University of California, Davis, USA
296 rdf:type schema:Organization
297 https://www.grid.ac/institutes/grid.47100.32 schema:alternateName Yale University
298 schema:name Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT USA
299 rdf:type schema:Organization
300 https://www.grid.ac/institutes/grid.8756.c schema:alternateName University of Glasgow
301 schema:name Department of Civil Engineering, University of Glasgow, Glasgow U.K.
302 rdf:type schema:Organization
303 https://www.grid.ac/institutes/grid.8767.e schema:alternateName Vrije Universiteit Brussel
304 schema:name Department of Molecular and Cellular Interactions, VIB - University of Brussels, Brussels, Belgium.
305 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...