The IGS Standard Operating Procedure for Automated Prokaryotic Annotation View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-04-25

AUTHORS

Kevin Galens, Joshua Orvis, Sean Daugherty, Heather H. Creasy, Sam Angiuoli, Owen White, Jennifer Wortman, Anup Mahurkar, Michelle Gwinn Giglio

ABSTRACT

The Institute for Genome Sciences (IGS) has developed a prokaryotic annotation pipeline that is used for coding gene/RNA prediction and functional annotation of Bacteria and Archaea. The fully automated pipeline accepts one or many genomic sequences as input and produces output in a variety of standard formats. Functional annotation is primarily based on similarity searches and motif finding combined with a hierarchical rule based annotation system. The output annotations can also be loaded into a relational database and accessed through visualization tools. More... »

PAGES

244-251

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.4056/sigs.1223234

DOI

http://dx.doi.org/10.4056/sigs.1223234

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1050238169

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21677861


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