Analyzing Morphogenetic Cell Behaviors in Vitally Stained Zebrafish Embryos View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

1998-12-07

AUTHORS

Mark S. Cooper , Leonard A. D’Amico , Clarissa A. Henry

ABSTRACT

Owing to its extremely rapid rate of development, as well as its optical transparency, the zebrafish embryo provides an excellent experimental system for analyzing the cellular dynamics that underlie vertebrate body axis formation. Moreover, the zebrafish (Danio rerio) is very amenable to genetic manipulation. Recent large-scale saturation mutagenesis screens have isolated several thousand strains of Danio rerio that possess recessive mutant alleles for genes involved in pattern formation or morphogenesis (1,2). These mutant strains of zebrafish represent a wealth of experimental material from which the patterns of cell division, cell intercalation, cell migration, and coordinate cell shape changes that underlie zebrafish morphogenesis can be analyzed. To help determine the genetic and epigenetic mechanisms that choreograph these events, it is often very useful to follow the morphogenetic behaviors of single cells and cell populations within the living zebrafish embryo. More... »

PAGES

185-204

Identifiers

URI

http://scigraph.springernature.com/pub.10.1385/1-59259-722-x:185

DOI

http://dx.doi.org/10.1385/1-59259-722-x:185

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1027777012

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/10231793


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Microscopy, Confocal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Morphogenesis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Staining and Labeling", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zebrafish", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Washington", 
          "id": "https://www.grid.ac/institutes/grid.34477.33", 
          "name": [
            "Department of Zoology, University of Washington"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Cooper", 
        "givenName": "Mark S.", 
        "id": "sg:person.01117636326.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01117636326.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Washington", 
          "id": "https://www.grid.ac/institutes/grid.34477.33", 
          "name": [
            "Department of Zoology, University of Washington"
          ], 
          "type": "Organization"
        }, 
        "familyName": "D\u2019Amico", 
        "givenName": "Leonard A.", 
        "id": "sg:person.01027234043.21", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01027234043.21"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Washington", 
          "id": "https://www.grid.ac/institutes/grid.34477.33", 
          "name": [
            "Department of Zoology, University of Washington"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Henry", 
        "givenName": "Clarissa A.", 
        "id": "sg:person.01074121503.44", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074121503.44"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/s0091-679x(08)61004-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001490066"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1083/jcb.100.1.27", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002146236"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1083/jcb.109.5.2067", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035528488"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0092-8674(90)90221-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040921868"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/dbio.1996.0294", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049242757"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.2581316", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062545117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1082906664", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1082906664", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1083036720", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "1998-12-07", 
    "datePublishedReg": "1998-12-07", 
    "description": "Owing to its extremely rapid rate of development, as well as its optical transparency, the zebrafish embryo provides an excellent experimental system for analyzing the cellular dynamics that underlie vertebrate body axis formation. Moreover, the zebrafish (Danio rerio) is very amenable to genetic manipulation. Recent large-scale saturation mutagenesis screens have isolated several thousand strains of Danio rerio that possess recessive mutant alleles for genes involved in pattern formation or morphogenesis (1,2). These mutant strains of zebrafish represent a wealth of experimental material from which the patterns of cell division, cell intercalation, cell migration, and coordinate cell shape changes that underlie zebrafish morphogenesis can be analyzed. To help determine the genetic and epigenetic mechanisms that choreograph these events, it is often very useful to follow the morphogenetic behaviors of single cells and cell populations within the living zebrafish embryo.", 
    "genre": "chapter", 
    "id": "sg:pub.10.1385/1-59259-722-x:185", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2684236", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": {
      "isbn": [
        "1-59259-722-X"
      ], 
      "name": "Confocal Microscopy", 
      "type": "Book"
    }, 
    "name": "Analyzing Morphogenetic Cell Behaviors in Vitally Stained Zebrafish Embryos", 
    "pagination": "185-204", 
    "productId": [
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1385/1-59259-722-x:185"
        ]
      }, 
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "84525f3a9c3e2cfd8b84b2e1dd8cf195e7b5b43e5256e32c498ea1ba40378c7f"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1027777012"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "10231793"
        ]
      }
    ], 
    "publisher": {
      "location": "New Jersey", 
      "name": "Humana Press", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1385/1-59259-722-x:185", 
      "https://app.dimensions.ai/details/publication/pub.1027777012"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2019-04-15T21:58", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8693_00000260.jsonl", 
    "type": "Chapter", 
    "url": "http://link.springer.com/10.1385/1-59259-722-X:185"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1385/1-59259-722-x:185'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1385/1-59259-722-x:185'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1385/1-59259-722-x:185'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1385/1-59259-722-x:185'


 

This table displays all metadata directly associated to this object as RDF triples.

120 TRIPLES      22 PREDICATES      39 URIs      24 LITERALS      13 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1385/1-59259-722-x:185 schema:about N2cac21b567dd487aae3b4a87d6b79af1
2 N83f875dbc7d84628b39722257465c8c3
3 N9300c74b36854c9980ef1a3e6a2f70c0
4 Nca89a09e7dc64566ba69b0015df44d46
5 Ne5ea5833dc8c4672a7870fdfd241ccaf
6 anzsrc-for:06
7 anzsrc-for:0604
8 schema:author N98ed14de9b4243b4a242cbabc2a19fcd
9 schema:citation https://app.dimensions.ai/details/publication/pub.1082906664
10 https://app.dimensions.ai/details/publication/pub.1083036720
11 https://doi.org/10.1006/dbio.1996.0294
12 https://doi.org/10.1016/0092-8674(90)90221-y
13 https://doi.org/10.1016/s0091-679x(08)61004-3
14 https://doi.org/10.1083/jcb.100.1.27
15 https://doi.org/10.1083/jcb.109.5.2067
16 https://doi.org/10.1126/science.2581316
17 schema:datePublished 1998-12-07
18 schema:datePublishedReg 1998-12-07
19 schema:description Owing to its extremely rapid rate of development, as well as its optical transparency, the zebrafish embryo provides an excellent experimental system for analyzing the cellular dynamics that underlie vertebrate body axis formation. Moreover, the zebrafish (Danio rerio) is very amenable to genetic manipulation. Recent large-scale saturation mutagenesis screens have isolated several thousand strains of Danio rerio that possess recessive mutant alleles for genes involved in pattern formation or morphogenesis (1,2). These mutant strains of zebrafish represent a wealth of experimental material from which the patterns of cell division, cell intercalation, cell migration, and coordinate cell shape changes that underlie zebrafish morphogenesis can be analyzed. To help determine the genetic and epigenetic mechanisms that choreograph these events, it is often very useful to follow the morphogenetic behaviors of single cells and cell populations within the living zebrafish embryo.
20 schema:genre chapter
21 schema:inLanguage en
22 schema:isAccessibleForFree false
23 schema:isPartOf Nbe13b8d14e464d65af2bfa030f997bbe
24 schema:name Analyzing Morphogenetic Cell Behaviors in Vitally Stained Zebrafish Embryos
25 schema:pagination 185-204
26 schema:productId N5a19e7ba85fe4a8c94614595391cb608
27 N688258790ef44753bc928070c986854a
28 Nb8ed7c5649f54e90aaf0345771f236b5
29 Nc6a39b4203884f37986627819a01045b
30 schema:publisher N128c65ae2dc547f8ac742eb0299237eb
31 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027777012
32 https://doi.org/10.1385/1-59259-722-x:185
33 schema:sdDatePublished 2019-04-15T21:58
34 schema:sdLicense https://scigraph.springernature.com/explorer/license/
35 schema:sdPublisher N879e2135106d4687852fbdadcc169398
36 schema:url http://link.springer.com/10.1385/1-59259-722-X:185
37 sgo:license sg:explorer/license/
38 sgo:sdDataset chapters
39 rdf:type schema:Chapter
40 N128c65ae2dc547f8ac742eb0299237eb schema:location New Jersey
41 schema:name Humana Press
42 rdf:type schema:Organisation
43 N2cac21b567dd487aae3b4a87d6b79af1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
44 schema:name Zebrafish
45 rdf:type schema:DefinedTerm
46 N4d67f6cb42d5498d9e0a222cb441939d rdf:first sg:person.01027234043.21
47 rdf:rest N7c319db1197147ddb7bb63979252ba68
48 N5a19e7ba85fe4a8c94614595391cb608 schema:name pubmed_id
49 schema:value 10231793
50 rdf:type schema:PropertyValue
51 N688258790ef44753bc928070c986854a schema:name readcube_id
52 schema:value 84525f3a9c3e2cfd8b84b2e1dd8cf195e7b5b43e5256e32c498ea1ba40378c7f
53 rdf:type schema:PropertyValue
54 N7c319db1197147ddb7bb63979252ba68 rdf:first sg:person.01074121503.44
55 rdf:rest rdf:nil
56 N83f875dbc7d84628b39722257465c8c3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
57 schema:name Microscopy, Confocal
58 rdf:type schema:DefinedTerm
59 N879e2135106d4687852fbdadcc169398 schema:name Springer Nature - SN SciGraph project
60 rdf:type schema:Organization
61 N9300c74b36854c9980ef1a3e6a2f70c0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
62 schema:name Morphogenesis
63 rdf:type schema:DefinedTerm
64 N98ed14de9b4243b4a242cbabc2a19fcd rdf:first sg:person.01117636326.81
65 rdf:rest N4d67f6cb42d5498d9e0a222cb441939d
66 Nb8ed7c5649f54e90aaf0345771f236b5 schema:name doi
67 schema:value 10.1385/1-59259-722-x:185
68 rdf:type schema:PropertyValue
69 Nbe13b8d14e464d65af2bfa030f997bbe schema:isbn 1-59259-722-X
70 schema:name Confocal Microscopy
71 rdf:type schema:Book
72 Nc6a39b4203884f37986627819a01045b schema:name dimensions_id
73 schema:value pub.1027777012
74 rdf:type schema:PropertyValue
75 Nca89a09e7dc64566ba69b0015df44d46 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
76 schema:name Animals
77 rdf:type schema:DefinedTerm
78 Ne5ea5833dc8c4672a7870fdfd241ccaf schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
79 schema:name Staining and Labeling
80 rdf:type schema:DefinedTerm
81 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
82 schema:name Biological Sciences
83 rdf:type schema:DefinedTerm
84 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
85 schema:name Genetics
86 rdf:type schema:DefinedTerm
87 sg:grant.2684236 http://pending.schema.org/fundedItem sg:pub.10.1385/1-59259-722-x:185
88 rdf:type schema:MonetaryGrant
89 sg:person.01027234043.21 schema:affiliation https://www.grid.ac/institutes/grid.34477.33
90 schema:familyName D’Amico
91 schema:givenName Leonard A.
92 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01027234043.21
93 rdf:type schema:Person
94 sg:person.01074121503.44 schema:affiliation https://www.grid.ac/institutes/grid.34477.33
95 schema:familyName Henry
96 schema:givenName Clarissa A.
97 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074121503.44
98 rdf:type schema:Person
99 sg:person.01117636326.81 schema:affiliation https://www.grid.ac/institutes/grid.34477.33
100 schema:familyName Cooper
101 schema:givenName Mark S.
102 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01117636326.81
103 rdf:type schema:Person
104 https://app.dimensions.ai/details/publication/pub.1082906664 schema:CreativeWork
105 https://app.dimensions.ai/details/publication/pub.1083036720 schema:CreativeWork
106 https://doi.org/10.1006/dbio.1996.0294 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049242757
107 rdf:type schema:CreativeWork
108 https://doi.org/10.1016/0092-8674(90)90221-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1040921868
109 rdf:type schema:CreativeWork
110 https://doi.org/10.1016/s0091-679x(08)61004-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001490066
111 rdf:type schema:CreativeWork
112 https://doi.org/10.1083/jcb.100.1.27 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002146236
113 rdf:type schema:CreativeWork
114 https://doi.org/10.1083/jcb.109.5.2067 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035528488
115 rdf:type schema:CreativeWork
116 https://doi.org/10.1126/science.2581316 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062545117
117 rdf:type schema:CreativeWork
118 https://www.grid.ac/institutes/grid.34477.33 schema:alternateName University of Washington
119 schema:name Department of Zoology, University of Washington
120 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...