Extraction of Ancient DNA View Full Text


Ontology type: schema:Chapter     


Chapter Info

DATE

2003-08-01

AUTHORS

John M.S. Bartlett , David Stirling , Wera M. Schmerer

ABSTRACT

The DNA extraction process represents one of the critical stages in the analysis of degraded or ancient DNA. If polymerase chain reaction (PCR) amplification starts from a poor extract containing low template quantities, stochastic variation in the amplification of individual alleles may lead to allelic dropout (1), resulting in a high risk of false-homozygous typing of a heterozygous sample (2). More... »

PAGES

57-62

Identifiers

URI

http://scigraph.springernature.com/pub.10.1385/1-59259-384-4:57

DOI

http://dx.doi.org/10.1385/1-59259-384-4:57

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1050420403

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/12958484


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Biodegradation, Environmental", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Indicators and Reagents", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymerase Chain Reaction", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Solvents", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "familyName": "Bartlett", 
        "givenName": "John M.S.", 
        "id": "sg:person.013166746061.32", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013166746061.32"
        ], 
        "type": "Person"
      }, 
      {
        "familyName": "Stirling", 
        "givenName": "David", 
        "id": "sg:person.014561707061.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014561707061.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Lakehead University", 
          "id": "https://www.grid.ac/institutes/grid.258900.6", 
          "name": [
            "Paleo DNA Laboratory, Department of Anthropology, Lakehead University"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schmerer", 
        "givenName": "Wera M.", 
        "id": "sg:person.01304075765.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304075765.10"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1002/(sici)1522-2683(19990101)20:8<1712::aid-elps1712>3.0.co;2-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006584157"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00207380", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008914850", 
          "https://doi.org/10.1007/bf00207380"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf00207380", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008914850", 
          "https://doi.org/10.1007/bf00207380"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0003-2697(89)90430-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011722705"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/21.10.2395", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025367492"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01225493", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047119226", 
          "https://doi.org/10.1007/bf01225493"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01225493", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047119226", 
          "https://doi.org/10.1007/bf01225493"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01224776", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052442498", 
          "https://doi.org/10.1007/bf01224776"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01224776", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052442498", 
          "https://doi.org/10.1007/bf01224776"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1079453119", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2003-08-01", 
    "datePublishedReg": "2003-08-01", 
    "description": "The DNA extraction process represents one of the critical stages in the analysis of degraded or ancient DNA. If polymerase chain reaction (PCR) amplification starts from a poor extract containing low template quantities, stochastic variation in the amplification of individual alleles may lead to allelic dropout (1), resulting in a high risk of false-homozygous typing of a heterozygous sample (2).", 
    "genre": "chapter", 
    "id": "sg:pub.10.1385/1-59259-384-4:57", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": {
      "isbn": [
        "1-59259-384-4"
      ], 
      "name": "PCR Protocols", 
      "type": "Book"
    }, 
    "name": "Extraction of Ancient DNA", 
    "pagination": "57-62", 
    "productId": [
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1385/1-59259-384-4:57"
        ]
      }, 
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "f02fd473ac3b5e7fefc89c3c1e8ba1fb34bf5c0eaf89c13bdf4ef90939dc97a0"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1050420403"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "12958484"
        ]
      }
    ], 
    "publisher": {
      "location": "New Jersey", 
      "name": "Humana Press", 
      "type": "Organisation"
    }, 
    "sameAs": [
      "https://doi.org/10.1385/1-59259-384-4:57", 
      "https://app.dimensions.ai/details/publication/pub.1050420403"
    ], 
    "sdDataset": "chapters", 
    "sdDatePublished": "2019-04-15T23:55", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8697_00000274.jsonl", 
    "type": "Chapter", 
    "url": "http://link.springer.com/10.1385/1-59259-384-4:57"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1385/1-59259-384-4:57'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1385/1-59259-384-4:57'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1385/1-59259-384-4:57'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1385/1-59259-384-4:57'


 

This table displays all metadata directly associated to this object as RDF triples.

117 TRIPLES      22 PREDICATES      38 URIs      24 LITERALS      13 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1385/1-59259-384-4:57 schema:about N8270484cdc0c45e98642fc9806675aa2
2 Nadb1ee57e8ef4324a4bc4a8b3908085a
3 Nb785ed7b23ef4d139da4dfba9e4dbfb3
4 Nbd9005142a9a4ffba96c96365440ab0c
5 Nd5fde6cc2aaf4fa9a28d190de4c013da
6 anzsrc-for:06
7 anzsrc-for:0604
8 schema:author N0908ec893a974e0ebe74b595376a0ab7
9 schema:citation sg:pub.10.1007/bf00207380
10 sg:pub.10.1007/bf01224776
11 sg:pub.10.1007/bf01225493
12 https://app.dimensions.ai/details/publication/pub.1079453119
13 https://doi.org/10.1002/(sici)1522-2683(19990101)20:8<1712::aid-elps1712>3.0.co;2-6
14 https://doi.org/10.1016/0003-2697(89)90430-2
15 https://doi.org/10.1093/nar/21.10.2395
16 schema:datePublished 2003-08-01
17 schema:datePublishedReg 2003-08-01
18 schema:description The DNA extraction process represents one of the critical stages in the analysis of degraded or ancient DNA. If polymerase chain reaction (PCR) amplification starts from a poor extract containing low template quantities, stochastic variation in the amplification of individual alleles may lead to allelic dropout (1), resulting in a high risk of false-homozygous typing of a heterozygous sample (2).
19 schema:genre chapter
20 schema:inLanguage en
21 schema:isAccessibleForFree false
22 schema:isPartOf N87037ae698b14d9ba81473443a0b4782
23 schema:name Extraction of Ancient DNA
24 schema:pagination 57-62
25 schema:productId N0e6262fd217a434eb21211d9190af4a2
26 N122d92648d5b4dcba87a4b414bf92c2b
27 N1ac55f5b8e3b48c0821dde0188763d41
28 N9220bc62bcb5425bab3e71dbf83948b5
29 schema:publisher Na0f40d93079841bb9ea7c0cd211e1e20
30 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050420403
31 https://doi.org/10.1385/1-59259-384-4:57
32 schema:sdDatePublished 2019-04-15T23:55
33 schema:sdLicense https://scigraph.springernature.com/explorer/license/
34 schema:sdPublisher N6e5f7eb81d234c11a9d64f376f2933c8
35 schema:url http://link.springer.com/10.1385/1-59259-384-4:57
36 sgo:license sg:explorer/license/
37 sgo:sdDataset chapters
38 rdf:type schema:Chapter
39 N0908ec893a974e0ebe74b595376a0ab7 rdf:first sg:person.013166746061.32
40 rdf:rest N41d4b2a51e1a41d1b5ff18c3d5f6189c
41 N0e6262fd217a434eb21211d9190af4a2 schema:name pubmed_id
42 schema:value 12958484
43 rdf:type schema:PropertyValue
44 N122d92648d5b4dcba87a4b414bf92c2b schema:name readcube_id
45 schema:value f02fd473ac3b5e7fefc89c3c1e8ba1fb34bf5c0eaf89c13bdf4ef90939dc97a0
46 rdf:type schema:PropertyValue
47 N1ac55f5b8e3b48c0821dde0188763d41 schema:name doi
48 schema:value 10.1385/1-59259-384-4:57
49 rdf:type schema:PropertyValue
50 N41d4b2a51e1a41d1b5ff18c3d5f6189c rdf:first sg:person.014561707061.51
51 rdf:rest N4415efbe90be4f02992c354279f61424
52 N4415efbe90be4f02992c354279f61424 rdf:first sg:person.01304075765.10
53 rdf:rest rdf:nil
54 N6e5f7eb81d234c11a9d64f376f2933c8 schema:name Springer Nature - SN SciGraph project
55 rdf:type schema:Organization
56 N8270484cdc0c45e98642fc9806675aa2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
57 schema:name Polymerase Chain Reaction
58 rdf:type schema:DefinedTerm
59 N87037ae698b14d9ba81473443a0b4782 schema:isbn 1-59259-384-4
60 schema:name PCR Protocols
61 rdf:type schema:Book
62 N9220bc62bcb5425bab3e71dbf83948b5 schema:name dimensions_id
63 schema:value pub.1050420403
64 rdf:type schema:PropertyValue
65 Na0f40d93079841bb9ea7c0cd211e1e20 schema:location New Jersey
66 schema:name Humana Press
67 rdf:type schema:Organisation
68 Nadb1ee57e8ef4324a4bc4a8b3908085a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
69 schema:name DNA
70 rdf:type schema:DefinedTerm
71 Nb785ed7b23ef4d139da4dfba9e4dbfb3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
72 schema:name Indicators and Reagents
73 rdf:type schema:DefinedTerm
74 Nbd9005142a9a4ffba96c96365440ab0c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
75 schema:name Solvents
76 rdf:type schema:DefinedTerm
77 Nd5fde6cc2aaf4fa9a28d190de4c013da schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
78 schema:name Biodegradation, Environmental
79 rdf:type schema:DefinedTerm
80 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
81 schema:name Biological Sciences
82 rdf:type schema:DefinedTerm
83 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
84 schema:name Genetics
85 rdf:type schema:DefinedTerm
86 sg:person.01304075765.10 schema:affiliation https://www.grid.ac/institutes/grid.258900.6
87 schema:familyName Schmerer
88 schema:givenName Wera M.
89 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304075765.10
90 rdf:type schema:Person
91 sg:person.013166746061.32 schema:familyName Bartlett
92 schema:givenName John M.S.
93 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013166746061.32
94 rdf:type schema:Person
95 sg:person.014561707061.51 schema:familyName Stirling
96 schema:givenName David
97 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014561707061.51
98 rdf:type schema:Person
99 sg:pub.10.1007/bf00207380 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008914850
100 https://doi.org/10.1007/bf00207380
101 rdf:type schema:CreativeWork
102 sg:pub.10.1007/bf01224776 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052442498
103 https://doi.org/10.1007/bf01224776
104 rdf:type schema:CreativeWork
105 sg:pub.10.1007/bf01225493 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047119226
106 https://doi.org/10.1007/bf01225493
107 rdf:type schema:CreativeWork
108 https://app.dimensions.ai/details/publication/pub.1079453119 schema:CreativeWork
109 https://doi.org/10.1002/(sici)1522-2683(19990101)20:8<1712::aid-elps1712>3.0.co;2-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006584157
110 rdf:type schema:CreativeWork
111 https://doi.org/10.1016/0003-2697(89)90430-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011722705
112 rdf:type schema:CreativeWork
113 https://doi.org/10.1093/nar/21.10.2395 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025367492
114 rdf:type schema:CreativeWork
115 https://www.grid.ac/institutes/grid.258900.6 schema:alternateName Lakehead University
116 schema:name Paleo DNA Laboratory, Department of Anthropology, Lakehead University
117 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...