Ontology type: schema:ScholarlyArticle Open Access: True
2017-07-24
AUTHORSAntonio E. Serrano, Lorena V. Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso, Cecilia Demergasso
ABSTRACTFusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrounded by mountain range, including some active volcanoes. This landscape can be an advantageous system to explore the effect of salinity on microorganisms that mediate biogeochemical reactions. Since 2000, microbial reduction of arsenic has been evidenced in the system, and the phylogenetic analysis of the original community plus the culture enrichments has revealed the predominance of Firmicutes phylum. Here, we describe the first whole draft genome sequence of an arsenic-reducing strain belonging to the Fusibacter genus showing the highest 16S rRNA gene sequence similarity (98%) with Fusibacter sp. strain Vns02. The draft genome consists of 57 contigs with 5,111,250 bp and an average G + C content of 37.6%. Out of 4780 total genes predicted, 4700 genes code for proteins and 80 genes for RNAs. Insights from the genome sequence and some microbiological features of the strain 3D3 are available under Bioproject accession PRJDB4973 and Biosample SAMD00055724. The release of the genome sequence of this strain could contribute to the understanding of the arsenic biogeochemistry in extreme environments. More... »
PAGES43
http://scigraph.springernature.com/pub.10.1186/s40793-017-0252-4
DOIhttp://dx.doi.org/10.1186/s40793-017-0252-4
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1090885847
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/28770028
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Microbiology",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/grid.8049.5",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Serrano",
"givenName": "Antonio E.",
"id": "sg:person.01003607053.37",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01003607053.37"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica para la Miner\u00eda, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"Centro de Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica para la Miner\u00eda, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Escudero",
"givenName": "Lorena V.",
"id": "sg:person.01151430505.56",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01151430505.56"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/grid.8049.5",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Tebes-Cayo",
"givenName": "Cinthya",
"id": "sg:person.010672356267.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010672356267.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/grid.8049.5",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Acosta",
"givenName": "Mauricio",
"id": "sg:person.01313720063.93",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01313720063.93"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/grid.8049.5",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Encalada",
"givenName": "Olga",
"id": "sg:person.012265317267.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012265317267.26"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/grid.8049.5",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Fern\u00e1ndez-Moroso",
"givenName": "Sebasti\u00e1n",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Centro de Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica para la Miner\u00eda, Antofagasta, Chile",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Centro de Biotecnolog\u00eda, Universidad Cat\u00f3lica del Norte, Antofagasta, Chile",
"Centro de Investigaci\u00f3n Cient\u00edfica y Tecnol\u00f3gica para la Miner\u00eda, Antofagasta, Chile"
],
"type": "Organization"
},
"familyName": "Demergasso",
"givenName": "Cecilia",
"id": "sg:person.012157327153.26",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012157327153.26"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1186/1471-2105-5-113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040413794",
"https://doi.org/10.1186/1471-2105-5-113"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00792-012-0452-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046698456",
"https://doi.org/10.1007/s00792-012-0452-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-11-555",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014990418",
"https://doi.org/10.1186/1471-2164-11-555"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/75556",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044135237",
"https://doi.org/10.1038/75556"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt1360",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038439506",
"https://doi.org/10.1038/nbt1360"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10482-013-9911-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043803472",
"https://doi.org/10.1007/s10482-013-9911-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10498-008-9056-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035242203",
"https://doi.org/10.1007/s10498-008-9056-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nmeth.1701",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049894869",
"https://doi.org/10.1038/nmeth.1701"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-0-387-68489-5_1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012457227",
"https://doi.org/10.1007/978-0-387-68489-5_1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-9-75",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013431920",
"https://doi.org/10.1186/1471-2164-9-75"
],
"type": "CreativeWork"
}
],
"datePublished": "2017-07-24",
"datePublishedReg": "2017-07-24",
"description": "Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascot\u00e1n, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrounded by mountain range, including some active volcanoes. This landscape can be an advantageous system to explore the effect of salinity on microorganisms that mediate biogeochemical reactions. Since 2000, microbial reduction of arsenic has been evidenced in the system, and the phylogenetic analysis of the original community plus the culture enrichments has revealed the predominance of Firmicutes phylum. Here, we describe the first whole draft genome sequence of an arsenic-reducing strain belonging to the Fusibacter genus showing the highest 16S rRNA gene sequence similarity (98%) with Fusibacter sp. strain Vns02. The draft genome consists of 57 contigs with 5,111,250\u00a0bp and an average G\u00a0+\u00a0C content of 37.6%. Out of 4780 total genes predicted, 4700 genes code for proteins and 80 genes for RNAs. Insights from the genome sequence and some microbiological features of the strain 3D3 are available under Bioproject accession PRJDB4973 and Biosample SAMD00055724. The release of the genome sequence of this strain could contribute to the understanding of the arsenic biogeochemistry in extreme environments.",
"genre": "article",
"id": "sg:pub.10.1186/s40793-017-0252-4",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.9278377",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1357741",
"issn": [
"2524-6372"
],
"name": "Environmental Microbiome",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "12"
}
],
"keywords": [
"Salar de Ascot\u00e1n",
"genome sequence",
"draft genome sequence",
"rRNA gene sequence similarity",
"Firmicutes phylum",
"gene sequence similarity",
"first draft genome sequence",
"athalassohaline environments",
"draft genome",
"total genes",
"sequence similarity",
"phylogenetic analysis",
"gene codes",
"effect of salinity",
"halotolerant strains",
"northern Chile",
"arsenic biogeochemistry",
"extreme environments",
"original community",
"phyla",
"Ascot\u00e1n",
"advantageous system",
"genes",
"culture enrichment",
"C content",
"sequence",
"mountain ranges",
"biogeochemical reactions",
"strains",
"genome",
"contigs",
"Fusibacter",
"genus",
"RNA",
"microbial reduction",
"sp",
"protein",
"microorganisms",
"BP",
"biogeochemistry",
"salinity",
"Chile",
"enrichment",
"landscape",
"similarity",
"insights",
"environment",
"community",
"understanding",
"release",
"basin",
"arsenic",
"microbiological features",
"content",
"analysis",
"predominance",
"system",
"effect",
"bottom",
"range",
"features",
"salt",
"reduction",
"reaction",
"closed basin",
"code",
"volcano",
"active volcanoes",
"tectonic basin"
],
"name": "First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascot\u00e1n in Northern Chile",
"pagination": "43",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1090885847"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/s40793-017-0252-4"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"28770028"
]
}
],
"sameAs": [
"https://doi.org/10.1186/s40793-017-0252-4",
"https://app.dimensions.ai/details/publication/pub.1090885847"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T17:04",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_741.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1186/s40793-017-0252-4"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s40793-017-0252-4'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s40793-017-0252-4'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s40793-017-0252-4'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s40793-017-0252-4'
This table displays all metadata directly associated to this object as RDF triples.
220 TRIPLES
21 PREDICATES
105 URIs
86 LITERALS
7 BLANK NODES