Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-12

AUTHORS

Jai Ram Rideout, John H. Chase, Evan Bolyen, Gail Ackermann, Antonio González, Rob Knight, J. Gregory Caporaso

ABSTRACT

BACKGROUND: Bioinformatics software often requires human-generated tabular text files as input and has specific requirements for how those data are formatted. Users frequently manage these data in spreadsheet programs, which is convenient for researchers who are compiling the requisite information because the spreadsheet programs can easily be used on different platforms including laptops and tablets, and because they provide a familiar interface. It is increasingly common for many different researchers to be involved in compiling these data, including study coordinators, clinicians, lab technicians and bioinformaticians. As a result, many research groups are shifting toward using cloud-based spreadsheet programs, such as Google Sheets, which support the concurrent editing of a single spreadsheet by different users working on different platforms. Most of the researchers who enter data are not familiar with the formatting requirements of the bioinformatics programs that will be used, so validating and correcting file formats is often a bottleneck prior to beginning bioinformatics analysis. MAIN TEXT: We present Keemei, a Google Sheets Add-on, for validating tabular files used in bioinformatics analyses. Keemei is available free of charge from Google's Chrome Web Store. Keemei can be installed and run on any web browser supported by Google Sheets. Keemei currently supports the validation of two widely used tabular bioinformatics formats, the Quantitative Insights into Microbial Ecology (QIIME) sample metadata mapping file format and the Spatially Referenced Genetic Data (SRGD) format, but is designed to easily support the addition of others. CONCLUSIONS: Keemei will save researchers time and frustration by providing a convenient interface for tabular bioinformatics file format validation. By allowing everyone involved with data entry for a project to easily validate their data, it will reduce the validation and formatting bottlenecks that are commonly encountered when human-generated data files are first used with a bioinformatics system. Simplifying the validation of essential tabular data files, such as sample metadata, will reduce common errors and thereby improve the quality and reliability of research outcomes. More... »

PAGES

27

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/s13742-016-0133-6

DOI

http://dx.doi.org/10.1186/s13742-016-0133-6

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1032260575

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27296526


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information and Computing Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cloud Computing", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Humans", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Information Storage and Retrieval", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Software", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "User-Computer Interface", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Northern Arizona University", 
          "id": "https://www.grid.ac/institutes/grid.261120.6", 
          "name": [
            "Center for Microbial Genetics and Genomics, Northern Arizona University, 86011, Flagstaff, AZ, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rideout", 
        "givenName": "Jai Ram", 
        "id": "sg:person.0741214617.83", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741214617.83"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Northern Arizona University", 
          "id": "https://www.grid.ac/institutes/grid.261120.6", 
          "name": [
            "Center for Microbial Genetics and Genomics, Northern Arizona University, 86011, Flagstaff, AZ, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chase", 
        "givenName": "John H.", 
        "id": "sg:person.01120172040.90", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01120172040.90"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Northern Arizona University", 
          "id": "https://www.grid.ac/institutes/grid.261120.6", 
          "name": [
            "Center for Microbial Genetics and Genomics, Northern Arizona University, 86011, Flagstaff, AZ, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bolyen", 
        "givenName": "Evan", 
        "id": "sg:person.07470651104.04", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07470651104.04"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Pediatrics, University of California San Diego, 92093, San Diego, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ackermann", 
        "givenName": "Gail", 
        "id": "sg:person.0740540226.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740540226.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Pediatrics, University of California San Diego, 92093, San Diego, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gonz\u00e1lez", 
        "givenName": "Antonio", 
        "id": "sg:person.01301120245.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01301120245.46"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Pediatrics, University of California San Diego, 92093, San Diego, CA, USA", 
            "Department of Computer Science and Engineering, University of California San Diego, 92093, San Diego, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Knight", 
        "givenName": "Rob", 
        "id": "sg:person.016311745377.96", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Northern Arizona University", 
          "id": "https://www.grid.ac/institutes/grid.261120.6", 
          "name": [
            "Center for Microbial Genetics and Genomics, Northern Arizona University, 86011, Flagstaff, AZ, USA", 
            "Department of Biological Sciences, Northern Arizona University, 86011, Flagstaff, AZ, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Caporaso", 
        "givenName": "J. Gregory", 
        "id": "sg:person.0624224157.70", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624224157.70"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1093/bioinformatics/btq415", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004926416"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt.1823", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005906569", 
          "https://doi.org/10.1038/nbt.1823"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.f.303", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009032055", 
          "https://doi.org/10.1038/nmeth.f.303"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.f.303", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009032055", 
          "https://doi.org/10.1038/nmeth.f.303"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/msystems.00010-15", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012089286"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.00335-09", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043659253"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2010-11-8-r86", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046347776", 
          "https://doi.org/10.1186/gb-2010-11-8-r86"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/tgis.12090", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047445180"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2011-12-5-r50", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050643751", 
          "https://doi.org/10.1186/gb-2011-12-5-r50"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bts718", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051995921"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2016-12", 
    "datePublishedReg": "2016-12-01", 
    "description": "BACKGROUND: Bioinformatics software often requires human-generated tabular text files as input and has specific requirements for how those data are formatted. Users frequently manage these data in spreadsheet programs, which is convenient for researchers who are compiling the requisite information because the spreadsheet programs can easily be used on different platforms including laptops and tablets, and because they provide a familiar interface. It is increasingly common for many different researchers to be involved in compiling these data, including study coordinators, clinicians, lab technicians and bioinformaticians. As a result, many research groups are shifting toward using cloud-based spreadsheet programs, such as Google Sheets, which support the concurrent editing of a single spreadsheet by different users working on different platforms. Most of the researchers who enter data are not familiar with the formatting requirements of the bioinformatics programs that will be used, so validating and correcting file formats is often a bottleneck prior to beginning bioinformatics analysis.\nMAIN TEXT: We present Keemei, a Google Sheets Add-on, for validating tabular files used in bioinformatics analyses. Keemei is available free of charge from Google's Chrome Web Store. Keemei can be installed and run on any web browser supported by Google Sheets. Keemei currently supports the validation of two widely used tabular bioinformatics formats, the Quantitative Insights into Microbial Ecology (QIIME) sample metadata mapping file format and the Spatially Referenced Genetic Data (SRGD) format, but is designed to easily support the addition of others.\nCONCLUSIONS: Keemei will save researchers time and frustration by providing a convenient interface for tabular bioinformatics file format validation. By allowing everyone involved with data entry for a project to easily validate their data, it will reduce the validation and formatting bottlenecks that are commonly encountered when human-generated data files are first used with a bioinformatics system. Simplifying the validation of essential tabular data files, such as sample metadata, will reduce common errors and thereby improve the quality and reliability of research outcomes.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/s13742-016-0133-6", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.5019325", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1047731", 
        "issn": [
          "2047-217X"
        ], 
        "name": "GigaScience", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "5"
      }
    ], 
    "name": "Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets", 
    "pagination": "27", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "99aefa3bcd11e4dcd88fe57536226cafb7c02398fc74a19c2f480914bd412da3"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "27296526"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101596872"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/s13742-016-0133-6"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1032260575"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/s13742-016-0133-6", 
      "https://app.dimensions.ai/details/publication/pub.1032260575"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T12:42", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000363_0000000363/records_70061_00000001.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1186%2Fs13742-016-0133-6"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s13742-016-0133-6'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s13742-016-0133-6'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s13742-016-0133-6'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s13742-016-0133-6'


 

This table displays all metadata directly associated to this object as RDF triples.

172 TRIPLES      21 PREDICATES      44 URIs      27 LITERALS      15 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/s13742-016-0133-6 schema:about N20ce2d8927374f78a4a630c069d186ea
2 N35f4b4fc296445bf8b8db4d3b63341e0
3 N3ae52ed87caa410ba7421b66029704b3
4 N4fe15339a1a64917b0cc389039ceedf1
5 Na476c05253634c578beaffced7178ee3
6 Ne6adb728f55d47a8b9d9875c18360958
7 anzsrc-for:08
8 anzsrc-for:0806
9 schema:author Nd17bcd949aad4fdba6fc99d425b780ac
10 schema:citation sg:pub.10.1038/nbt.1823
11 sg:pub.10.1038/nmeth.f.303
12 sg:pub.10.1186/gb-2010-11-8-r86
13 sg:pub.10.1186/gb-2011-12-5-r50
14 https://doi.org/10.1093/bioinformatics/btq415
15 https://doi.org/10.1093/bioinformatics/bts718
16 https://doi.org/10.1111/tgis.12090
17 https://doi.org/10.1128/aem.00335-09
18 https://doi.org/10.1128/msystems.00010-15
19 schema:datePublished 2016-12
20 schema:datePublishedReg 2016-12-01
21 schema:description BACKGROUND: Bioinformatics software often requires human-generated tabular text files as input and has specific requirements for how those data are formatted. Users frequently manage these data in spreadsheet programs, which is convenient for researchers who are compiling the requisite information because the spreadsheet programs can easily be used on different platforms including laptops and tablets, and because they provide a familiar interface. It is increasingly common for many different researchers to be involved in compiling these data, including study coordinators, clinicians, lab technicians and bioinformaticians. As a result, many research groups are shifting toward using cloud-based spreadsheet programs, such as Google Sheets, which support the concurrent editing of a single spreadsheet by different users working on different platforms. Most of the researchers who enter data are not familiar with the formatting requirements of the bioinformatics programs that will be used, so validating and correcting file formats is often a bottleneck prior to beginning bioinformatics analysis. MAIN TEXT: We present Keemei, a Google Sheets Add-on, for validating tabular files used in bioinformatics analyses. Keemei is available free of charge from Google's Chrome Web Store. Keemei can be installed and run on any web browser supported by Google Sheets. Keemei currently supports the validation of two widely used tabular bioinformatics formats, the Quantitative Insights into Microbial Ecology (QIIME) sample metadata mapping file format and the Spatially Referenced Genetic Data (SRGD) format, but is designed to easily support the addition of others. CONCLUSIONS: Keemei will save researchers time and frustration by providing a convenient interface for tabular bioinformatics file format validation. By allowing everyone involved with data entry for a project to easily validate their data, it will reduce the validation and formatting bottlenecks that are commonly encountered when human-generated data files are first used with a bioinformatics system. Simplifying the validation of essential tabular data files, such as sample metadata, will reduce common errors and thereby improve the quality and reliability of research outcomes.
22 schema:genre research_article
23 schema:inLanguage en
24 schema:isAccessibleForFree true
25 schema:isPartOf N7f84425440f444f18558653ea23c9be4
26 Nad9a96cc854e48cd906f95c15517127e
27 sg:journal.1047731
28 schema:name Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets
29 schema:pagination 27
30 schema:productId N2c4a37227f3c4010b9f0211a19357327
31 N40dc92ef449d45c292fdd0df413d35e1
32 N7d4f0b0b98464927986ea6aa21784336
33 Na9e6eb0172774dacaa9418d38dbe0d48
34 Nf28c88178c5f47109b005f9169cc595b
35 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032260575
36 https://doi.org/10.1186/s13742-016-0133-6
37 schema:sdDatePublished 2019-04-11T12:42
38 schema:sdLicense https://scigraph.springernature.com/explorer/license/
39 schema:sdPublisher N86d7a594c73e4db792eaa53632edab4b
40 schema:url https://link.springer.com/10.1186%2Fs13742-016-0133-6
41 sgo:license sg:explorer/license/
42 sgo:sdDataset articles
43 rdf:type schema:ScholarlyArticle
44 N1cf3d74e9cfb45c1be8f03cd3bda010c rdf:first sg:person.016311745377.96
45 rdf:rest Nda0763de62bb4751b41e68b8337af718
46 N1f6a1425e47a4d6989a8c012a04f22bc rdf:first sg:person.01301120245.46
47 rdf:rest N1cf3d74e9cfb45c1be8f03cd3bda010c
48 N20ce2d8927374f78a4a630c069d186ea schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
49 schema:name Cloud Computing
50 rdf:type schema:DefinedTerm
51 N2c4a37227f3c4010b9f0211a19357327 schema:name pubmed_id
52 schema:value 27296526
53 rdf:type schema:PropertyValue
54 N35f4b4fc296445bf8b8db4d3b63341e0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
55 schema:name Humans
56 rdf:type schema:DefinedTerm
57 N3ae52ed87caa410ba7421b66029704b3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
58 schema:name Software
59 rdf:type schema:DefinedTerm
60 N40dc92ef449d45c292fdd0df413d35e1 schema:name dimensions_id
61 schema:value pub.1032260575
62 rdf:type schema:PropertyValue
63 N4fe15339a1a64917b0cc389039ceedf1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
64 schema:name Information Storage and Retrieval
65 rdf:type schema:DefinedTerm
66 N61f864a168e74259b4bced158f503b69 rdf:first sg:person.0740540226.01
67 rdf:rest N1f6a1425e47a4d6989a8c012a04f22bc
68 N7d4f0b0b98464927986ea6aa21784336 schema:name doi
69 schema:value 10.1186/s13742-016-0133-6
70 rdf:type schema:PropertyValue
71 N7f84425440f444f18558653ea23c9be4 schema:issueNumber 1
72 rdf:type schema:PublicationIssue
73 N7feea85b0ed6477596f45aa23eae6b56 rdf:first sg:person.01120172040.90
74 rdf:rest N8b060eed897842c0bc4578747a031ab1
75 N86d7a594c73e4db792eaa53632edab4b schema:name Springer Nature - SN SciGraph project
76 rdf:type schema:Organization
77 N8b060eed897842c0bc4578747a031ab1 rdf:first sg:person.07470651104.04
78 rdf:rest N61f864a168e74259b4bced158f503b69
79 Na476c05253634c578beaffced7178ee3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name Computational Biology
81 rdf:type schema:DefinedTerm
82 Na9e6eb0172774dacaa9418d38dbe0d48 schema:name nlm_unique_id
83 schema:value 101596872
84 rdf:type schema:PropertyValue
85 Nad9a96cc854e48cd906f95c15517127e schema:volumeNumber 5
86 rdf:type schema:PublicationVolume
87 Nd17bcd949aad4fdba6fc99d425b780ac rdf:first sg:person.0741214617.83
88 rdf:rest N7feea85b0ed6477596f45aa23eae6b56
89 Nda0763de62bb4751b41e68b8337af718 rdf:first sg:person.0624224157.70
90 rdf:rest rdf:nil
91 Ne6adb728f55d47a8b9d9875c18360958 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
92 schema:name User-Computer Interface
93 rdf:type schema:DefinedTerm
94 Nf28c88178c5f47109b005f9169cc595b schema:name readcube_id
95 schema:value 99aefa3bcd11e4dcd88fe57536226cafb7c02398fc74a19c2f480914bd412da3
96 rdf:type schema:PropertyValue
97 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
98 schema:name Information and Computing Sciences
99 rdf:type schema:DefinedTerm
100 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
101 schema:name Information Systems
102 rdf:type schema:DefinedTerm
103 sg:grant.5019325 http://pending.schema.org/fundedItem sg:pub.10.1186/s13742-016-0133-6
104 rdf:type schema:MonetaryGrant
105 sg:journal.1047731 schema:issn 2047-217X
106 schema:name GigaScience
107 rdf:type schema:Periodical
108 sg:person.01120172040.90 schema:affiliation https://www.grid.ac/institutes/grid.261120.6
109 schema:familyName Chase
110 schema:givenName John H.
111 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01120172040.90
112 rdf:type schema:Person
113 sg:person.01301120245.46 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
114 schema:familyName González
115 schema:givenName Antonio
116 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01301120245.46
117 rdf:type schema:Person
118 sg:person.016311745377.96 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
119 schema:familyName Knight
120 schema:givenName Rob
121 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016311745377.96
122 rdf:type schema:Person
123 sg:person.0624224157.70 schema:affiliation https://www.grid.ac/institutes/grid.261120.6
124 schema:familyName Caporaso
125 schema:givenName J. Gregory
126 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624224157.70
127 rdf:type schema:Person
128 sg:person.0740540226.01 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
129 schema:familyName Ackermann
130 schema:givenName Gail
131 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740540226.01
132 rdf:type schema:Person
133 sg:person.0741214617.83 schema:affiliation https://www.grid.ac/institutes/grid.261120.6
134 schema:familyName Rideout
135 schema:givenName Jai Ram
136 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741214617.83
137 rdf:type schema:Person
138 sg:person.07470651104.04 schema:affiliation https://www.grid.ac/institutes/grid.261120.6
139 schema:familyName Bolyen
140 schema:givenName Evan
141 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07470651104.04
142 rdf:type schema:Person
143 sg:pub.10.1038/nbt.1823 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005906569
144 https://doi.org/10.1038/nbt.1823
145 rdf:type schema:CreativeWork
146 sg:pub.10.1038/nmeth.f.303 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009032055
147 https://doi.org/10.1038/nmeth.f.303
148 rdf:type schema:CreativeWork
149 sg:pub.10.1186/gb-2010-11-8-r86 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046347776
150 https://doi.org/10.1186/gb-2010-11-8-r86
151 rdf:type schema:CreativeWork
152 sg:pub.10.1186/gb-2011-12-5-r50 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050643751
153 https://doi.org/10.1186/gb-2011-12-5-r50
154 rdf:type schema:CreativeWork
155 https://doi.org/10.1093/bioinformatics/btq415 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004926416
156 rdf:type schema:CreativeWork
157 https://doi.org/10.1093/bioinformatics/bts718 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051995921
158 rdf:type schema:CreativeWork
159 https://doi.org/10.1111/tgis.12090 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047445180
160 rdf:type schema:CreativeWork
161 https://doi.org/10.1128/aem.00335-09 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043659253
162 rdf:type schema:CreativeWork
163 https://doi.org/10.1128/msystems.00010-15 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012089286
164 rdf:type schema:CreativeWork
165 https://www.grid.ac/institutes/grid.261120.6 schema:alternateName Northern Arizona University
166 schema:name Center for Microbial Genetics and Genomics, Northern Arizona University, 86011, Flagstaff, AZ, USA
167 Department of Biological Sciences, Northern Arizona University, 86011, Flagstaff, AZ, USA
168 rdf:type schema:Organization
169 https://www.grid.ac/institutes/grid.266100.3 schema:alternateName University of California, San Diego
170 schema:name Department of Computer Science and Engineering, University of California San Diego, 92093, San Diego, CA, USA
171 Department of Pediatrics, University of California San Diego, 92093, San Diego, CA, USA
172 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...