The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.) View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-12

AUTHORS

Shu-Fen Li, Yu-Jiao Guo, Jia-Rong Li, Dong-Xu Zhang, Bing-Xiao Wang, Ning Li, Chuan-Liang Deng, Wu-Jun Gao

ABSTRACT

Background: Repetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a considerable portion of plant genomes. Analysis of the repeat fraction benefits the understanding of genome structure and evolution. Spinach (Spinacia oleracea L.), an important vegetable crop, is also a model dioecious plant species for studying sex determination and sex chromosome evolution. However, the repetitive sequences of the spinach genome have not been fully investigated. Results: We extensively analyzed the repetitive components of draft spinach genome, especially TEs and satellites, by different strategies. A total of 16,002 full-length TEs were identified. Among the most abundant long terminal repeat (LTR) retrotransposons (REs), Copia elements were overrepresented compared with Gypsy ones. Angela was the most dominating Copia lineage; Ogre/Tat was the most abundant Gypsy lineage. The mean insertion age of LTR-REs was 1.42 million years; approximately 83.7% of these elements were retrotransposed during the last two million years. RepeatMasker totally masked about 64.05% of the spinach genome, with LTR-REs, non-LTR-REs, and DNA transposons occupying 49.2, 2.4, and 5.6%, respectively. Fluorescence in situ hybridization (FISH) analysis showed that most LTR-REs dispersed all over the chromosomes, by contrast, elements of CRM lineage were distributed at the centromeric region of all chromosomes. In addition, Ogre/Tat lineage mainly accumulated on sex chromosomes, and satellites Spsat2 and Spsat3 were exclusively located at the telomeric region of the short arm of sex chromosomes. Conclusions: We reliably annotated the TE fraction of the draft genome of spinach. FISH analysis indicates that Ogre/Tat lineage and the sex chromosome-specific satellites DNAs might participate in sex chromosome formation and evolution. Based on FISH signals of microsatellites, together with 45S rDNA, a fine karyotype of spinach was established. This study improves our knowledge of repetitive sequence organization in spinach genome and aids in accurate spinach karyotype construction. More... »

PAGES

3

References to SciGraph publications

  • 2018-12. Impact of transposable elements on genome structure and evolution in bread wheat in GENOME BIOLOGY
  • 2015-01. The genome sequence of the orchid Phalaenopsis equestris in NATURE GENETICS
  • 2013-08. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds in NATURE
  • 2012. Roadmap for Annotating Transposable Elements in Eukaryote Genomes in MOBILE GENETIC ELEMENTS
  • 2009-06. The role of repetitive DNA in structure and evolution of sex chromosomes in plants in HEREDITY
  • 2010-06. Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs in HEREDITY
  • 2009-10. A transposon-induced epigenetic change leads to sex determination in melon in NATURE
  • 2017-05-24. Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions in NATURE COMMUNICATIONS
  • 2013-12. HTQC: a fast quality control toolkit for Illumina sequencing data in BMC BIOINFORMATICS
  • 2008-03. Stability of Repeated Sequence Clusters in Hybrids of Maize as Revealed by FISH in TROPICAL PLANT BIOLOGY
  • 1998-09. The paleontology of intergene retrotransposons of maize in NATURE GENETICS
  • 2008-03. Recent Origin of Dioecious and Gynodioecious Y Chromosomes in Papaya in TROPICAL PLANT BIOLOGY
  • 1980-06. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences in JOURNAL OF MOLECULAR EVOLUTION
  • 2008-10. Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes in CHROMOSOME RESEARCH
  • 2011-12. A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia(Cucurbitaceae) in BMC EVOLUTIONARY BIOLOGY
  • 2011-04. Analysis of plant diversity with retrotransposon-based molecular markers in HEREDITY
  • 2017-08. Newly developed SSR markers reveal genetic diversity and geographical clustering in spinach (Spinacia oleracea) in MOLECULAR GENETICS AND GENOMICS
  • 2016-05. Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes in PLANTA
  • 2008-12. Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome in HEREDITY
  • 2014-06. Genome sequence of the cultivated cotton Gossypium arboreum in NATURE GENETICS
  • 2008-12. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons in BMC BIOINFORMATICS
  • 2009-03. Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes in MOLECULAR GENETICS AND GENOMICS
  • Journal

    TITLE

    Mobile DNA

    ISSUE

    1

    VOLUME

    10

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/s13100-019-0147-6

    DOI

    http://dx.doi.org/10.1186/s13100-019-0147-6

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1111511891

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30675191


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Li", 
            "givenName": "Shu-Fen", 
            "id": "sg:person.01272271707.75", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272271707.75"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Guo", 
            "givenName": "Yu-Jiao", 
            "id": "sg:person.010576777034.28", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010576777034.28"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Li", 
            "givenName": "Jia-Rong", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Shanxi Datong University", 
              "id": "https://www.grid.ac/institutes/grid.440639.c", 
              "name": [
                "College of Life Science, Shanxi Datong University, 037009, Datong, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Zhang", 
            "givenName": "Dong-Xu", 
            "id": "sg:person.01210213333.49", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01210213333.49"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wang", 
            "givenName": "Bing-Xiao", 
            "id": "sg:person.010425127707.02", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010425127707.02"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Li", 
            "givenName": "Ning", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Deng", 
            "givenName": "Chuan-Liang", 
            "id": "sg:person.01241327635.21", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01241327635.21"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Henan Normal University", 
              "id": "https://www.grid.ac/institutes/grid.462338.8", 
              "name": [
                "College of Life Sciences, Henan Normal University, 453007, Xinxiang, China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Gao", 
            "givenName": "Wu-Jun", 
            "id": "sg:person.01056766035.26", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01056766035.26"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1371/journal.pone.0009490", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000778834"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/nph.12669", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002310665"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature12309", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002750314", 
              "https://doi.org/10.1038/nature12309"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkp752", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003379240"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkp752", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003379240"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00425-016-2485-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003902423", 
              "https://doi.org/10.1007/s00425-016-2485-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.genet.33.1.479", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004335146"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btt054", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005532824"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.010711", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007123498"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1410068111", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009902982"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.183905.114", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012648443"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng.2987", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013808272", 
              "https://doi.org/10.1038/ng.2987"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btl158", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014668137"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.108.092304", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015081724"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.108.092304", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015081724"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.849004", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016890117"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/1695", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017391035", 
              "https://doi.org/10.1038/1695"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/1695", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017391035", 
              "https://doi.org/10.1038/1695"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkq1061", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017494830"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2148-11-28", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017581995", 
              "https://doi.org/10.1186/1471-2148-11-28"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/nph.13497", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020314088"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/nph.13497", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020314088"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/nph.13497", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020314088"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/nph.13497", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020314088"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/dnares/dsu042", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020436149"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkp759", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022072256"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01731581", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023239976", 
              "https://doi.org/10.1007/bf01731581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026359", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023443782"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2009.165", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024011623", 
              "https://doi.org/10.1038/hdy.2009.165"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2009.165", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024011623", 
              "https://doi.org/10.1038/hdy.2009.165"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-14-33", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025537288", 
              "https://doi.org/10.1186/1471-2105-14-33"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-14-33", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025537288", 
              "https://doi.org/10.1186/1471-2105-14-33"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-1-61779-603-6_3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025564312", 
              "https://doi.org/10.1007/978-1-61779-603-6_3"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkh340", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025846396"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev-arplant-042110-103914", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026037189"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/00087114.2012.760879", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027221175"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/gbe/evw009", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027311749"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0168-9525(00)02024-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035021159"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1098/rsbl.2016.0407", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036339708"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2009.17", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036707067", 
              "https://doi.org/10.1038/hdy.2009.17"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2009.17", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036707067", 
              "https://doi.org/10.1038/hdy.2009.17"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-9-18", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037665074", 
              "https://doi.org/10.1186/1471-2105-9-18"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-9-18", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037665074", 
              "https://doi.org/10.1186/1471-2105-9-18"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkq862", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038097007"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0403715101", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039904096"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1159/000082377", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040304602"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.12.3.357", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040579565"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/bies.200800219", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042068910"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/bies.200800219", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042068910"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12042-007-9005-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042998005", 
              "https://doi.org/10.1007/s12042-007-9005-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2010.93", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043161314", 
              "https://doi.org/10.1038/hdy.2010.93"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-313x.2010.04263.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043347864"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-313x.2010.04263.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043347864"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.106.056259", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045742958"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.106.056259", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045742958"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.2008.100", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045778780", 
              "https://doi.org/10.1038/hdy.2008.100"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g10-115", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046262206"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev-arplant-050213-035811", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046920277"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-008-1254-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047349634", 
              "https://doi.org/10.1007/s10577-008-1254-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s10577-008-1254-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047349634", 
              "https://doi.org/10.1007/s10577-008-1254-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/gbe/evt049", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047763389"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkr1065", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048457774"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12042-007-9001-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049141034", 
              "https://doi.org/10.1007/s12042-007-9001-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bib/bbm048", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049384921"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1207833109", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051160390"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng.3149", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051243070", 
              "https://doi.org/10.1038/ng.3149"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-008-0405-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051530698", 
              "https://doi.org/10.1007/s00438-008-0405-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-008-0405-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051530698", 
              "https://doi.org/10.1007/s00438-008-0405-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.arplant.59.032607.092744", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051904467"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08498", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052355281", 
              "https://doi.org/10.1038/nature08498"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08498", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052355281", 
              "https://doi.org/10.1038/nature08498"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/plb.12301", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052448533"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/anbo.1998.0746", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1054486134"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/aob/mct155", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1059395192"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1178534", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062460510"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/g3.116.030239", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1067739350"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/g3.116.030239", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1067739350"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.4161/mge.23462", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1072305958"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1077358092", 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-017-1314-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084517838", 
              "https://doi.org/10.1007/s00438-017-1314-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-017-1314-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084517838", 
              "https://doi.org/10.1007/s00438-017-1314-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkx257", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1084602559"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ncomms15275", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085575741", 
              "https://doi.org/10.1038/ncomms15275"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1515/jib-2017-0029", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091151983"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1515/jib-2017-0029", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091151983"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.7554/elife.30038", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1091368496"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3390/genes8100290", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1092338023"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s13059-018-1479-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1105995259", 
              "https://doi.org/10.1186/s13059-018-1479-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/25.5.955", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1107690588"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2019-12", 
        "datePublishedReg": "2019-12-01", 
        "description": "Background: Repetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a considerable portion of plant genomes. Analysis of the repeat fraction benefits the understanding of genome structure and evolution. Spinach (Spinacia oleracea L.), an important vegetable crop, is also a model dioecious plant species for studying sex determination and sex chromosome evolution. However, the repetitive sequences of the spinach genome have not been fully investigated.\nResults: We extensively analyzed the repetitive components of draft spinach genome, especially TEs and satellites, by different strategies. A total of 16,002 full-length TEs were identified. Among the most abundant long terminal repeat (LTR) retrotransposons (REs), Copia elements were overrepresented compared with Gypsy ones. Angela was the most dominating Copia lineage; Ogre/Tat was the most abundant Gypsy lineage. The mean insertion age of LTR-REs was 1.42 million years; approximately 83.7% of these elements were retrotransposed during the last two million years. RepeatMasker totally masked about 64.05% of the spinach genome, with LTR-REs, non-LTR-REs, and DNA transposons occupying 49.2, 2.4, and 5.6%, respectively. Fluorescence in situ hybridization (FISH) analysis showed that most LTR-REs dispersed all over the chromosomes, by contrast, elements of CRM lineage were distributed at the centromeric region of all chromosomes. In addition, Ogre/Tat lineage mainly accumulated on sex chromosomes, and satellites Spsat2 and Spsat3 were exclusively located at the telomeric region of the short arm of sex chromosomes.\nConclusions: We reliably annotated the TE fraction of the draft genome of spinach. FISH analysis indicates that Ogre/Tat lineage and the sex chromosome-specific satellites DNAs might participate in sex chromosome formation and evolution. Based on FISH signals of microsatellites, together with 45S rDNA, a fine karyotype of spinach was established. This study improves our knowledge of repetitive sequence organization in spinach genome and aids in accurate spinach karyotype construction.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/s13100-019-0147-6", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isPartOf": [
          {
            "id": "sg:journal.1042561", 
            "issn": [
              "1759-8753"
            ], 
            "name": "Mobile DNA", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "10"
          }
        ], 
        "name": "The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)", 
        "pagination": "3", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "a798b9d0602d467d13b13fbe94007b2789c41b31a0f9c2263555881e288b0f6b"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "30675191"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101519891"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/s13100-019-0147-6"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1111511891"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/s13100-019-0147-6", 
          "https://app.dimensions.ai/details/publication/pub.1111511891"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-11T08:56", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000325_0000000325/records_100805_00000000.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://link.springer.com/10.1186%2Fs13100-019-0147-6"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s13100-019-0147-6'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s13100-019-0147-6'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s13100-019-0147-6'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s13100-019-0147-6'


     

    This table displays all metadata directly associated to this object as RDF triples.

    349 TRIPLES      21 PREDICATES      99 URIs      21 LITERALS      9 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/s13100-019-0147-6 schema:about anzsrc-for:06
    2 anzsrc-for:0604
    3 schema:author N9aec3651cf3d4a30aec6d992799f2b44
    4 schema:citation sg:pub.10.1007/978-1-61779-603-6_3
    5 sg:pub.10.1007/bf01731581
    6 sg:pub.10.1007/s00425-016-2485-7
    7 sg:pub.10.1007/s00438-008-0405-7
    8 sg:pub.10.1007/s00438-017-1314-4
    9 sg:pub.10.1007/s10577-008-1254-2
    10 sg:pub.10.1007/s12042-007-9001-y
    11 sg:pub.10.1007/s12042-007-9005-7
    12 sg:pub.10.1038/1695
    13 sg:pub.10.1038/hdy.2008.100
    14 sg:pub.10.1038/hdy.2009.165
    15 sg:pub.10.1038/hdy.2009.17
    16 sg:pub.10.1038/hdy.2010.93
    17 sg:pub.10.1038/nature08498
    18 sg:pub.10.1038/nature12309
    19 sg:pub.10.1038/ncomms15275
    20 sg:pub.10.1038/ng.2987
    21 sg:pub.10.1038/ng.3149
    22 sg:pub.10.1186/1471-2105-14-33
    23 sg:pub.10.1186/1471-2105-9-18
    24 sg:pub.10.1186/1471-2148-11-28
    25 sg:pub.10.1186/s13059-018-1479-0
    26 https://app.dimensions.ai/details/publication/pub.1077358092
    27 https://doi.org/10.1002/bies.200800219
    28 https://doi.org/10.1006/anbo.1998.0746
    29 https://doi.org/10.1016/s0168-9525(00)02024-2
    30 https://doi.org/10.1073/pnas.0403715101
    31 https://doi.org/10.1073/pnas.1207833109
    32 https://doi.org/10.1073/pnas.1410068111
    33 https://doi.org/10.1080/00087114.2012.760879
    34 https://doi.org/10.1093/aob/mct155
    35 https://doi.org/10.1093/bib/bbm048
    36 https://doi.org/10.1093/bioinformatics/btl158
    37 https://doi.org/10.1093/bioinformatics/btt054
    38 https://doi.org/10.1093/dnares/dsu042
    39 https://doi.org/10.1093/gbe/evt049
    40 https://doi.org/10.1093/gbe/evw009
    41 https://doi.org/10.1093/nar/25.5.955
    42 https://doi.org/10.1093/nar/gkh340
    43 https://doi.org/10.1093/nar/gkp752
    44 https://doi.org/10.1093/nar/gkp759
    45 https://doi.org/10.1093/nar/gkq1061
    46 https://doi.org/10.1093/nar/gkq862
    47 https://doi.org/10.1093/nar/gkr1065
    48 https://doi.org/10.1093/nar/gkx257
    49 https://doi.org/10.1093/oxfordjournals.molbev.a026359
    50 https://doi.org/10.1098/rsbl.2016.0407
    51 https://doi.org/10.1101/gr.183905.114
    52 https://doi.org/10.1101/gr.849004
    53 https://doi.org/10.1104/pp.010711
    54 https://doi.org/10.1105/tpc.12.3.357
    55 https://doi.org/10.1111/j.1365-313x.2010.04263.x
    56 https://doi.org/10.1111/nph.12669
    57 https://doi.org/10.1111/nph.13497
    58 https://doi.org/10.1111/plb.12301
    59 https://doi.org/10.1126/science.1178534
    60 https://doi.org/10.1139/g10-115
    61 https://doi.org/10.1146/annurev-arplant-042110-103914
    62 https://doi.org/10.1146/annurev-arplant-050213-035811
    63 https://doi.org/10.1146/annurev.arplant.59.032607.092744
    64 https://doi.org/10.1146/annurev.genet.33.1.479
    65 https://doi.org/10.1159/000082377
    66 https://doi.org/10.1371/journal.pone.0009490
    67 https://doi.org/10.1515/jib-2017-0029
    68 https://doi.org/10.1534/g3.116.030239
    69 https://doi.org/10.1534/genetics.106.056259
    70 https://doi.org/10.1534/genetics.108.092304
    71 https://doi.org/10.3390/genes8100290
    72 https://doi.org/10.4161/mge.23462
    73 https://doi.org/10.7554/elife.30038
    74 schema:datePublished 2019-12
    75 schema:datePublishedReg 2019-12-01
    76 schema:description Background: Repetitive sequences, including transposable elements (TEs) and satellite DNAs, occupy a considerable portion of plant genomes. Analysis of the repeat fraction benefits the understanding of genome structure and evolution. Spinach (Spinacia oleracea L.), an important vegetable crop, is also a model dioecious plant species for studying sex determination and sex chromosome evolution. However, the repetitive sequences of the spinach genome have not been fully investigated. Results: We extensively analyzed the repetitive components of draft spinach genome, especially TEs and satellites, by different strategies. A total of 16,002 full-length TEs were identified. Among the most abundant long terminal repeat (LTR) retrotransposons (REs), Copia elements were overrepresented compared with Gypsy ones. Angela was the most dominating Copia lineage; Ogre/Tat was the most abundant Gypsy lineage. The mean insertion age of LTR-REs was 1.42 million years; approximately 83.7% of these elements were retrotransposed during the last two million years. RepeatMasker totally masked about 64.05% of the spinach genome, with LTR-REs, non-LTR-REs, and DNA transposons occupying 49.2, 2.4, and 5.6%, respectively. Fluorescence in situ hybridization (FISH) analysis showed that most LTR-REs dispersed all over the chromosomes, by contrast, elements of CRM lineage were distributed at the centromeric region of all chromosomes. In addition, Ogre/Tat lineage mainly accumulated on sex chromosomes, and satellites Spsat2 and Spsat3 were exclusively located at the telomeric region of the short arm of sex chromosomes. Conclusions: We reliably annotated the TE fraction of the draft genome of spinach. FISH analysis indicates that Ogre/Tat lineage and the sex chromosome-specific satellites DNAs might participate in sex chromosome formation and evolution. Based on FISH signals of microsatellites, together with 45S rDNA, a fine karyotype of spinach was established. This study improves our knowledge of repetitive sequence organization in spinach genome and aids in accurate spinach karyotype construction.
    77 schema:genre research_article
    78 schema:inLanguage en
    79 schema:isAccessibleForFree true
    80 schema:isPartOf Nb93815d8c121444a861b0611871fc8c8
    81 Nfe9697a68b73440d9802a840e9bb1227
    82 sg:journal.1042561
    83 schema:name The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)
    84 schema:pagination 3
    85 schema:productId N0a654a6727234998aab91f148d075097
    86 N15f7402f774845d494ae413a322cff1e
    87 Na07bf345dfb44f63a6a1b4454bc7054f
    88 Nda18bbfb67fe40bab868496ba1374cb3
    89 Nf2d5d257d4604aab8512533bb46326a5
    90 schema:sameAs https://app.dimensions.ai/details/publication/pub.1111511891
    91 https://doi.org/10.1186/s13100-019-0147-6
    92 schema:sdDatePublished 2019-04-11T08:56
    93 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    94 schema:sdPublisher Ne8ead5ad27de44dc84b040a0b81e950e
    95 schema:url https://link.springer.com/10.1186%2Fs13100-019-0147-6
    96 sgo:license sg:explorer/license/
    97 sgo:sdDataset articles
    98 rdf:type schema:ScholarlyArticle
    99 N0a654a6727234998aab91f148d075097 schema:name dimensions_id
    100 schema:value pub.1111511891
    101 rdf:type schema:PropertyValue
    102 N0d0c78176b6141f0badd05f85941ec55 rdf:first sg:person.01210213333.49
    103 rdf:rest N64cd5bcf43ee4591a522de5d6fb9c72d
    104 N15f7402f774845d494ae413a322cff1e schema:name nlm_unique_id
    105 schema:value 101519891
    106 rdf:type schema:PropertyValue
    107 N623499b49a63466ba708b97c40afaf2b rdf:first N6f598abdca144d4ca6a60d887e63a038
    108 rdf:rest Nc8c11a79a1334c34b93264cfdd32ee51
    109 N64cd5bcf43ee4591a522de5d6fb9c72d rdf:first sg:person.010425127707.02
    110 rdf:rest N623499b49a63466ba708b97c40afaf2b
    111 N6f598abdca144d4ca6a60d887e63a038 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    112 schema:familyName Li
    113 schema:givenName Ning
    114 rdf:type schema:Person
    115 N794682fdfaff47d58af8e39f80a99ecf rdf:first sg:person.010576777034.28
    116 rdf:rest Nb9af4edfd4f34c8bacb8cd1cecdfbecc
    117 N859da4856efa43818c09e732f125170a schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    118 schema:familyName Li
    119 schema:givenName Jia-Rong
    120 rdf:type schema:Person
    121 N9aec3651cf3d4a30aec6d992799f2b44 rdf:first sg:person.01272271707.75
    122 rdf:rest N794682fdfaff47d58af8e39f80a99ecf
    123 Na07bf345dfb44f63a6a1b4454bc7054f schema:name doi
    124 schema:value 10.1186/s13100-019-0147-6
    125 rdf:type schema:PropertyValue
    126 Nb93815d8c121444a861b0611871fc8c8 schema:volumeNumber 10
    127 rdf:type schema:PublicationVolume
    128 Nb9af4edfd4f34c8bacb8cd1cecdfbecc rdf:first N859da4856efa43818c09e732f125170a
    129 rdf:rest N0d0c78176b6141f0badd05f85941ec55
    130 Nc8c11a79a1334c34b93264cfdd32ee51 rdf:first sg:person.01241327635.21
    131 rdf:rest Nfaad7068665d4e758b757178351b3682
    132 Nda18bbfb67fe40bab868496ba1374cb3 schema:name pubmed_id
    133 schema:value 30675191
    134 rdf:type schema:PropertyValue
    135 Ne8ead5ad27de44dc84b040a0b81e950e schema:name Springer Nature - SN SciGraph project
    136 rdf:type schema:Organization
    137 Nf2d5d257d4604aab8512533bb46326a5 schema:name readcube_id
    138 schema:value a798b9d0602d467d13b13fbe94007b2789c41b31a0f9c2263555881e288b0f6b
    139 rdf:type schema:PropertyValue
    140 Nfaad7068665d4e758b757178351b3682 rdf:first sg:person.01056766035.26
    141 rdf:rest rdf:nil
    142 Nfe9697a68b73440d9802a840e9bb1227 schema:issueNumber 1
    143 rdf:type schema:PublicationIssue
    144 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    145 schema:name Biological Sciences
    146 rdf:type schema:DefinedTerm
    147 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    148 schema:name Genetics
    149 rdf:type schema:DefinedTerm
    150 sg:journal.1042561 schema:issn 1759-8753
    151 schema:name Mobile DNA
    152 rdf:type schema:Periodical
    153 sg:person.010425127707.02 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    154 schema:familyName Wang
    155 schema:givenName Bing-Xiao
    156 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010425127707.02
    157 rdf:type schema:Person
    158 sg:person.01056766035.26 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    159 schema:familyName Gao
    160 schema:givenName Wu-Jun
    161 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01056766035.26
    162 rdf:type schema:Person
    163 sg:person.010576777034.28 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    164 schema:familyName Guo
    165 schema:givenName Yu-Jiao
    166 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010576777034.28
    167 rdf:type schema:Person
    168 sg:person.01210213333.49 schema:affiliation https://www.grid.ac/institutes/grid.440639.c
    169 schema:familyName Zhang
    170 schema:givenName Dong-Xu
    171 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01210213333.49
    172 rdf:type schema:Person
    173 sg:person.01241327635.21 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    174 schema:familyName Deng
    175 schema:givenName Chuan-Liang
    176 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01241327635.21
    177 rdf:type schema:Person
    178 sg:person.01272271707.75 schema:affiliation https://www.grid.ac/institutes/grid.462338.8
    179 schema:familyName Li
    180 schema:givenName Shu-Fen
    181 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272271707.75
    182 rdf:type schema:Person
    183 sg:pub.10.1007/978-1-61779-603-6_3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025564312
    184 https://doi.org/10.1007/978-1-61779-603-6_3
    185 rdf:type schema:CreativeWork
    186 sg:pub.10.1007/bf01731581 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023239976
    187 https://doi.org/10.1007/bf01731581
    188 rdf:type schema:CreativeWork
    189 sg:pub.10.1007/s00425-016-2485-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003902423
    190 https://doi.org/10.1007/s00425-016-2485-7
    191 rdf:type schema:CreativeWork
    192 sg:pub.10.1007/s00438-008-0405-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051530698
    193 https://doi.org/10.1007/s00438-008-0405-7
    194 rdf:type schema:CreativeWork
    195 sg:pub.10.1007/s00438-017-1314-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084517838
    196 https://doi.org/10.1007/s00438-017-1314-4
    197 rdf:type schema:CreativeWork
    198 sg:pub.10.1007/s10577-008-1254-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047349634
    199 https://doi.org/10.1007/s10577-008-1254-2
    200 rdf:type schema:CreativeWork
    201 sg:pub.10.1007/s12042-007-9001-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1049141034
    202 https://doi.org/10.1007/s12042-007-9001-y
    203 rdf:type schema:CreativeWork
    204 sg:pub.10.1007/s12042-007-9005-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042998005
    205 https://doi.org/10.1007/s12042-007-9005-7
    206 rdf:type schema:CreativeWork
    207 sg:pub.10.1038/1695 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017391035
    208 https://doi.org/10.1038/1695
    209 rdf:type schema:CreativeWork
    210 sg:pub.10.1038/hdy.2008.100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045778780
    211 https://doi.org/10.1038/hdy.2008.100
    212 rdf:type schema:CreativeWork
    213 sg:pub.10.1038/hdy.2009.165 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024011623
    214 https://doi.org/10.1038/hdy.2009.165
    215 rdf:type schema:CreativeWork
    216 sg:pub.10.1038/hdy.2009.17 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036707067
    217 https://doi.org/10.1038/hdy.2009.17
    218 rdf:type schema:CreativeWork
    219 sg:pub.10.1038/hdy.2010.93 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043161314
    220 https://doi.org/10.1038/hdy.2010.93
    221 rdf:type schema:CreativeWork
    222 sg:pub.10.1038/nature08498 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052355281
    223 https://doi.org/10.1038/nature08498
    224 rdf:type schema:CreativeWork
    225 sg:pub.10.1038/nature12309 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002750314
    226 https://doi.org/10.1038/nature12309
    227 rdf:type schema:CreativeWork
    228 sg:pub.10.1038/ncomms15275 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085575741
    229 https://doi.org/10.1038/ncomms15275
    230 rdf:type schema:CreativeWork
    231 sg:pub.10.1038/ng.2987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013808272
    232 https://doi.org/10.1038/ng.2987
    233 rdf:type schema:CreativeWork
    234 sg:pub.10.1038/ng.3149 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051243070
    235 https://doi.org/10.1038/ng.3149
    236 rdf:type schema:CreativeWork
    237 sg:pub.10.1186/1471-2105-14-33 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025537288
    238 https://doi.org/10.1186/1471-2105-14-33
    239 rdf:type schema:CreativeWork
    240 sg:pub.10.1186/1471-2105-9-18 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037665074
    241 https://doi.org/10.1186/1471-2105-9-18
    242 rdf:type schema:CreativeWork
    243 sg:pub.10.1186/1471-2148-11-28 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017581995
    244 https://doi.org/10.1186/1471-2148-11-28
    245 rdf:type schema:CreativeWork
    246 sg:pub.10.1186/s13059-018-1479-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1105995259
    247 https://doi.org/10.1186/s13059-018-1479-0
    248 rdf:type schema:CreativeWork
    249 https://app.dimensions.ai/details/publication/pub.1077358092 schema:CreativeWork
    250 https://doi.org/10.1002/bies.200800219 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042068910
    251 rdf:type schema:CreativeWork
    252 https://doi.org/10.1006/anbo.1998.0746 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054486134
    253 rdf:type schema:CreativeWork
    254 https://doi.org/10.1016/s0168-9525(00)02024-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035021159
    255 rdf:type schema:CreativeWork
    256 https://doi.org/10.1073/pnas.0403715101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039904096
    257 rdf:type schema:CreativeWork
    258 https://doi.org/10.1073/pnas.1207833109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051160390
    259 rdf:type schema:CreativeWork
    260 https://doi.org/10.1073/pnas.1410068111 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009902982
    261 rdf:type schema:CreativeWork
    262 https://doi.org/10.1080/00087114.2012.760879 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027221175
    263 rdf:type schema:CreativeWork
    264 https://doi.org/10.1093/aob/mct155 schema:sameAs https://app.dimensions.ai/details/publication/pub.1059395192
    265 rdf:type schema:CreativeWork
    266 https://doi.org/10.1093/bib/bbm048 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049384921
    267 rdf:type schema:CreativeWork
    268 https://doi.org/10.1093/bioinformatics/btl158 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014668137
    269 rdf:type schema:CreativeWork
    270 https://doi.org/10.1093/bioinformatics/btt054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005532824
    271 rdf:type schema:CreativeWork
    272 https://doi.org/10.1093/dnares/dsu042 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020436149
    273 rdf:type schema:CreativeWork
    274 https://doi.org/10.1093/gbe/evt049 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047763389
    275 rdf:type schema:CreativeWork
    276 https://doi.org/10.1093/gbe/evw009 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027311749
    277 rdf:type schema:CreativeWork
    278 https://doi.org/10.1093/nar/25.5.955 schema:sameAs https://app.dimensions.ai/details/publication/pub.1107690588
    279 rdf:type schema:CreativeWork
    280 https://doi.org/10.1093/nar/gkh340 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025846396
    281 rdf:type schema:CreativeWork
    282 https://doi.org/10.1093/nar/gkp752 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003379240
    283 rdf:type schema:CreativeWork
    284 https://doi.org/10.1093/nar/gkp759 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022072256
    285 rdf:type schema:CreativeWork
    286 https://doi.org/10.1093/nar/gkq1061 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017494830
    287 rdf:type schema:CreativeWork
    288 https://doi.org/10.1093/nar/gkq862 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038097007
    289 rdf:type schema:CreativeWork
    290 https://doi.org/10.1093/nar/gkr1065 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048457774
    291 rdf:type schema:CreativeWork
    292 https://doi.org/10.1093/nar/gkx257 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084602559
    293 rdf:type schema:CreativeWork
    294 https://doi.org/10.1093/oxfordjournals.molbev.a026359 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023443782
    295 rdf:type schema:CreativeWork
    296 https://doi.org/10.1098/rsbl.2016.0407 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036339708
    297 rdf:type schema:CreativeWork
    298 https://doi.org/10.1101/gr.183905.114 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012648443
    299 rdf:type schema:CreativeWork
    300 https://doi.org/10.1101/gr.849004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016890117
    301 rdf:type schema:CreativeWork
    302 https://doi.org/10.1104/pp.010711 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007123498
    303 rdf:type schema:CreativeWork
    304 https://doi.org/10.1105/tpc.12.3.357 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040579565
    305 rdf:type schema:CreativeWork
    306 https://doi.org/10.1111/j.1365-313x.2010.04263.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1043347864
    307 rdf:type schema:CreativeWork
    308 https://doi.org/10.1111/nph.12669 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002310665
    309 rdf:type schema:CreativeWork
    310 https://doi.org/10.1111/nph.13497 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020314088
    311 rdf:type schema:CreativeWork
    312 https://doi.org/10.1111/plb.12301 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052448533
    313 rdf:type schema:CreativeWork
    314 https://doi.org/10.1126/science.1178534 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062460510
    315 rdf:type schema:CreativeWork
    316 https://doi.org/10.1139/g10-115 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046262206
    317 rdf:type schema:CreativeWork
    318 https://doi.org/10.1146/annurev-arplant-042110-103914 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026037189
    319 rdf:type schema:CreativeWork
    320 https://doi.org/10.1146/annurev-arplant-050213-035811 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046920277
    321 rdf:type schema:CreativeWork
    322 https://doi.org/10.1146/annurev.arplant.59.032607.092744 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051904467
    323 rdf:type schema:CreativeWork
    324 https://doi.org/10.1146/annurev.genet.33.1.479 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004335146
    325 rdf:type schema:CreativeWork
    326 https://doi.org/10.1159/000082377 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040304602
    327 rdf:type schema:CreativeWork
    328 https://doi.org/10.1371/journal.pone.0009490 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000778834
    329 rdf:type schema:CreativeWork
    330 https://doi.org/10.1515/jib-2017-0029 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091151983
    331 rdf:type schema:CreativeWork
    332 https://doi.org/10.1534/g3.116.030239 schema:sameAs https://app.dimensions.ai/details/publication/pub.1067739350
    333 rdf:type schema:CreativeWork
    334 https://doi.org/10.1534/genetics.106.056259 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045742958
    335 rdf:type schema:CreativeWork
    336 https://doi.org/10.1534/genetics.108.092304 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015081724
    337 rdf:type schema:CreativeWork
    338 https://doi.org/10.3390/genes8100290 schema:sameAs https://app.dimensions.ai/details/publication/pub.1092338023
    339 rdf:type schema:CreativeWork
    340 https://doi.org/10.4161/mge.23462 schema:sameAs https://app.dimensions.ai/details/publication/pub.1072305958
    341 rdf:type schema:CreativeWork
    342 https://doi.org/10.7554/elife.30038 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091368496
    343 rdf:type schema:CreativeWork
    344 https://www.grid.ac/institutes/grid.440639.c schema:alternateName Shanxi Datong University
    345 schema:name College of Life Science, Shanxi Datong University, 037009, Datong, China
    346 rdf:type schema:Organization
    347 https://www.grid.ac/institutes/grid.462338.8 schema:alternateName Henan Normal University
    348 schema:name College of Life Sciences, Henan Normal University, 453007, Xinxiang, China
    349 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...