The bio.tools registry of software tools and data resources for the life sciences View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-08-12

AUTHORS

Jon Ison, Hans Ienasescu, Piotr Chmura, Emil Rydza, Hervé Ménager, Matúš Kalaš, Veit Schwämmle, Björn Grüning, Niall Beard, Rodrigo Lopez, Severine Duvaud, Heinz Stockinger, Bengt Persson, Radka Svobodová Vařeková, Tomáš Raček, Jiří Vondrášek, Hedi Peterson, Ahto Salumets, Inge Jonassen, Rob Hooft, Tommi Nyrönen, Alfonso Valencia, Salvador Capella, Josep Gelpí, Federico Zambelli, Babis Savakis, Brane Leskošek, Kristoffer Rapacki, Christophe Blanchet, Rafael Jimenez, Arlindo Oliveira, Gert Vriend, Olivier Collin, Jacques van Helden, Peter Løngreen, Søren Brunak

ABSTRACT

Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue ( https://bio.tools ) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information. More... »

PAGES

164

References to SciGraph publications

  • 2017-11-15. Early career researchers want Open Science in GENOME BIOLOGY
  • 2010-12-21. Community-driven computational biology with Debian Linux in BMC BIOINFORMATICS
  • Journal

    TITLE

    Genome Biology

    ISSUE

    1

    VOLUME

    20

    Author Affiliations

  • National Life Science Supercomputing Center, Technical University of Denmark, Building 208, DK-2800 Kongens Lyngby, Denmark
  • Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, DK-2200 Copenhagen, Denmark
  • Hub de Bioinformatique et de Biostatistiques, Institut Pasteur, C3BI USR, 3756 IP CNRS, Paris, France
  • Computational Biology Unit, Department of Informatics, University of Bergen, N-5020 Bergen, Norway
  • Department of Biochemistry and Molecular Biology and VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
  • Department of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany
  • School of Computer Science, The University of Manchester, Oxford Road, Manchester, M13 9PL UK
  • The EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD UK
  • SIB Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipole, CH-1015 Lausanne, Switzerland
  • Bioinformatics Infrastructure for Life Sciences, Science for Life Laboratory, Dept of Cell and Molecular Biology, Uppsala University, S-75124 Uppsala, Sweden
  • CEITEC - Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno-Bohunice, Czech Republic
  • Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo namesti 2, 160 00 Prague, Czech Republic
  • ELIXIR-EE, Institute of Computer Science, University of Tartu. J Liivi 2, Tartu, Estonia
  • Dutch Techcentre for Life Sciences, Jaarbeursplein 6, 3521 AL Utrecht, The Netherlands
  • CSC - IT Center for Science, PO BOX 405, FI-02101 Espoo, Finland
  • Institució Catalana de Recerca i Estudis Avançats (ICREA), Pg. Lluıs Companys 23, 08010 Barcelona, Spain
  • Barcelona Supercomputing Centre (BSC), 08034 Barcelona, Spain
  • Department of Biochemistry and Molecular Biomedicine, University of Barcelona, INB / BSC-CNS, Barcelona, Spain
  • Department of Biosciences, University of Milano, Via Celoria 26, Milan, Italy
  • Biomedical Sciences Research Centre, Alexander Fleming 34 Al. Fleming Str, 16672 Vari, Greece
  • Faculty of Medicine / ELIXIR-SI, University of Ljubljana, Vrazov trg 2, SI-1000 Ljubljana, Slovenia
  • CNRS, UMS 3601, Institut Français de Bioinformatique, IFB-core, 2 rue Gaston Crémieux, F-91000 Evry, France
  • ELIXIR-Hub, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD UK
  • INESC-ID / Instituto Superior Técnico, R. Alves Redol 9, Lisbon, Portugal
  • Radboud University Medical Centre, CMBI, Postbus 9101, 6500 HB Nijmegen, Netherlands
  • Plateforme GenOuest Univ Rennes, Inria, CNRS, IRISA, F-35000 Rennes, France
  • Aix-Marseille Univ, INSERM, lab. Theory and Approaches of Genome Complexity (TAGC), Marseille, France
  • Department of Bio and Health Informatics, Technical University of Denmark, Building 208, DK-2800 Kongens Lyngby, Denmark
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/s13059-019-1772-6

    DOI

    http://dx.doi.org/10.1186/s13059-019-1772-6

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1120285126

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/31405382


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