Genomic analyses of an extensive collection of wild and cultivated accessions provide new insights into peach breeding history View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-12

AUTHORS

Yong Li, Ke Cao, Gengrui Zhu, Weichao Fang, Changwen Chen, Xinwei Wang, Pei Zhao, Jian Guo, Tiyu Ding, Liping Guan, Qian Zhang, Wenwu Guo, Zhangjun Fei, Lirong Wang

ABSTRACT

BACKGROUND: Human selection has a long history of transforming crop genomes. Peach (Prunus persica) has undergone more than 5000 years of domestication that led to remarkable changes in a series of agronomically important traits, but genetic bases underlying these changes and the effects of artificial selection on genomic diversity are not well understood. RESULTS: Here, we report a comprehensive analysis of peach evolution based on genome sequences of 480 wild and cultivated accessions. By focusing on a set of quantitative trait loci (QTLs), we provide evidence supporting that distinct phases of domestication and improvement have led to an increase in fruit size and taste and extended its geographic distribution. Fruit size was predominantly selected during domestication, and selection for large fruits has led to the loss of genetic diversity in several fruit weight QTLs. In contrast, fruit taste-related QTLs were successively selected for by domestication and improvement, with more QTLs selected for during improvement. Genome-wide association studies of 11 agronomic traits suggest a set of candidate genes controlling these traits and potential markers for molecular breeding. Candidate loci for genes that contributed to the adaption to low-chill regions were identified. Furthermore, the genomic bases of divergent selection for fruit texture and local breeding for different flavors between Asian and European/North American cultivars were also determined. CONCLUSIONS: Our results elucidate the genetic basis of peach evolution and provide new resources for future genomics-guided peach breeding. More... »

PAGES

36

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/s13059-019-1648-9

    DOI

    http://dx.doi.org/10.1186/s13059-019-1648-9

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1112315656

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30791928


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