Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2017-12

AUTHORS

Muluneh Tamiru, Satoshi Natsume, Hiroki Takagi, Benjamen White, Hiroki Yaegashi, Motoki Shimizu, Kentaro Yoshida, Aiko Uemura, Kaori Oikawa, Akira Abe, Naoya Urasaki, Hideo Matsumura, Pachakkil Babil, Shinsuke Yamanaka, Ryo Matsumoto, Satoru Muranaka, Gezahegn Girma, Antonio Lopez-Montes, Melaku Gedil, Ranjana Bhattacharjee, Michael Abberton, P. Lava Kumar, Ismail Rabbi, Mai Tsujimura, Toru Terachi, Wilfried Haerty, Manuel Corpas, Sophien Kamoun, Günter Kahl, Hiroko Takagi, Robert Asiedu, Ryohei Terauchi

ABSTRACT

BACKGROUND: Root and tuber crops are a major food source in tropical Africa. Among these crops are several species in the monocotyledonous genus Dioscorea collectively known as yam, a staple tuber crop that contributes enormously to the subsistence and socio-cultural lives of millions of people, principally in West and Central Africa. Yam cultivation is constrained by several factors, and yam can be considered a neglected "orphan" crop that would benefit from crop improvement efforts. However, the lack of genetic and genomic tools has impeded the improvement of this staple crop. RESULTS: To accelerate marker-assisted breeding of yam, we performed genome analysis of white Guinea yam (Dioscorea rotundata) and assembled a 594-Mb genome, 76.4% of which was distributed among 21 linkage groups. In total, we predicted 26,198 genes. Phylogenetic analyses with 2381 conserved genes revealed that Dioscorea is a unique lineage of monocotyledons distinct from the Poales (rice), Arecales (palm), and Zingiberales (banana). The entire Dioscorea genus is characterized by the occurrence of separate male and female plants (dioecy), a feature that has limited efficient yam breeding. To infer the genetics of sex determination, we performed whole-genome resequencing of bulked segregants (quantitative trait locus sequencing [QTL-seq]) in F1 progeny segregating for male and female plants and identified a genomic region associated with female heterogametic (male = ZZ, female = ZW) sex determination. We further delineated the W locus and used it to develop a molecular marker for sex identification of Guinea yam plants at the seedling stage. CONCLUSIONS: Guinea yam belongs to a unique and highly differentiated clade of monocotyledons. The genome analyses and sex-linked marker development performed in this study should greatly accelerate marker-assisted breeding of Guinea yam. In addition, our QTL-seq approach can be utilized in genetic studies of other outcrossing crops and organisms with highly heterozygous genomes. Genomic analysis of orphan crops such as yam promotes efforts to improve food security and the sustainability of tropical agriculture. More... »

PAGES

86

References to SciGraph publications

  • 2008-12. The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids in TROPICAL PLANT BIOLOGY
  • 2013-08. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis in NATURE PROTOCOLS
  • 2013-12. Genome sequence of the date palm Phoenix dactylifera L in NATURE COMMUNICATIONS
  • 2014-08. Next-generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams in THEORETICAL AND APPLIED GENETICS
  • 2013-08. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds in NATURE
  • 2005-07. Segregation patterns of isozyme loci and microsatellite markers show the diploidy of African yam Dioscorea rotundata (2n=40) in THEORETICAL AND APPLIED GENETICS
  • 2013-04. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions in GENOME BIOLOGY
  • 2005-12. Automated generation of heuristics for biological sequence comparison in BMC BIOINFORMATICS
  • 1972-10. Guinea yams the botany, ethnobotany, use and possible future of yams in West Africa in ECONOMIC BOTANY
  • 2005-08. The map-based sequence of the rice genome in NATURE
  • 2014-12. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 in GENOME BIOLOGY
  • 2011-12. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects in BMC BIOINFORMATICS
  • 2016-12. Diversification into novel habitats in the Africa clade of Dioscorea (Dioscoreaceae): erect habit and elephant’s foot tubers in BMC EVOLUTIONARY BIOLOGY
  • 2016-12. Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly in BMC GENOMICS
  • 1986-12. The molecular basis of genetic diversity among cytoplasms of Triticum and Aegilops in THEORETICAL AND APPLIED GENETICS
  • 2006-12. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor in BMC BIOINFORMATICS
  • 2009-03. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome in GENOME BIOLOGY
  • 2010-02-11. Genome sequencing and analysis of the model grass Brachypodium distachyon in NATURE
  • 2010-12. Evolutionary history and stress regulation of the lectin superfamily in higher plants in BMC EVOLUTIONARY BIOLOGY
  • 2012-03-01. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks in NATURE PROTOCOLS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/s12915-017-0419-x

    DOI

    http://dx.doi.org/10.1186/s12915-017-0419-x

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1091843119

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/28927400


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Biomarkers", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Crops, Agricultural", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Dioscorea", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Plant Breeding", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Quantitative Trait Loci", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Whole Genome Sequencing", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tamiru", 
            "givenName": "Muluneh", 
            "id": "sg:person.0712740612.86", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712740612.86"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Natsume", 
            "givenName": "Satoshi", 
            "id": "sg:person.01001663025.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001663025.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Takagi", 
            "givenName": "Hiroki", 
            "id": "sg:person.01032263220.99", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032263220.99"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Earlham Institute", 
              "id": "https://www.grid.ac/institutes/grid.421605.4", 
              "name": [
                "The Earlham Institute, Norwich, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "White", 
            "givenName": "Benjamen", 
            "id": "sg:person.0606615113.22", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606615113.22"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Yaegashi", 
            "givenName": "Hiroki", 
            "id": "sg:person.01261062107.83", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01261062107.83"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Shimizu", 
            "givenName": "Motoki", 
            "id": "sg:person.01037415010.80", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037415010.80"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Kobe University", 
              "id": "https://www.grid.ac/institutes/grid.31432.37", 
              "name": [
                "Kobe University, Kobe, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Yoshida", 
            "givenName": "Kentaro", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Uemura", 
            "givenName": "Aiko", 
            "id": "sg:person.0605447320.85", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605447320.85"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Oikawa", 
            "givenName": "Kaori", 
            "id": "sg:person.0620214511.70", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620214511.70"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Iwate Biotechnology Research Center", 
              "id": "https://www.grid.ac/institutes/grid.277489.7", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Abe", 
            "givenName": "Akira", 
            "id": "sg:person.01100376420.07", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100376420.07"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "name": [
                "Okinawa Agricultural Research Center, Naha, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Urasaki", 
            "givenName": "Naoya", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Shinshu University", 
              "id": "https://www.grid.ac/institutes/grid.263518.b", 
              "name": [
                "Shinshu University, Nagano, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Matsumura", 
            "givenName": "Hideo", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Tokyo University of Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.410772.7", 
              "name": [
                "Tokyo University of Agriculture, Tokyo, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Babil", 
            "givenName": "Pachakkil", 
            "id": "sg:person.014431552103.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014431552103.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Japan International Research Center for Agricultural Sciences", 
              "id": "https://www.grid.ac/institutes/grid.452611.5", 
              "name": [
                "Japan International Research Center for Agricultural Sciences, Tsukuba, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Yamanaka", 
            "givenName": "Shinsuke", 
            "id": "sg:person.01224514555.29", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01224514555.29"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Japan International Research Center for Agricultural Sciences", 
              "id": "https://www.grid.ac/institutes/grid.452611.5", 
              "name": [
                "Japan International Research Center for Agricultural Sciences, Tsukuba, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Matsumoto", 
            "givenName": "Ryo", 
            "id": "sg:person.014750662303.55", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014750662303.55"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Japan International Research Center for Agricultural Sciences", 
              "id": "https://www.grid.ac/institutes/grid.452611.5", 
              "name": [
                "Japan International Research Center for Agricultural Sciences, Tsukuba, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Muranaka", 
            "givenName": "Satoru", 
            "id": "sg:person.0662022601.12", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0662022601.12"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Girma", 
            "givenName": "Gezahegn", 
            "id": "sg:person.01143653670.02", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01143653670.02"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lopez-Montes", 
            "givenName": "Antonio", 
            "id": "sg:person.01364103416.17", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01364103416.17"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Gedil", 
            "givenName": "Melaku", 
            "id": "sg:person.0701414433.74", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0701414433.74"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bhattacharjee", 
            "givenName": "Ranjana", 
            "id": "sg:person.010176563467.37", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010176563467.37"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Abberton", 
            "givenName": "Michael", 
            "id": "sg:person.0742377740.43", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0742377740.43"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Kumar", 
            "givenName": "P. Lava", 
            "id": "sg:person.016143714471.06", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016143714471.06"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Rabbi", 
            "givenName": "Ismail", 
            "id": "sg:person.0651751221.31", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0651751221.31"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Kyoto Sangyo University", 
              "id": "https://www.grid.ac/institutes/grid.258798.9", 
              "name": [
                "Kyoto Sangyo University, Kyoto, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tsujimura", 
            "givenName": "Mai", 
            "id": "sg:person.01236332443.91", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01236332443.91"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Kyoto Sangyo University", 
              "id": "https://www.grid.ac/institutes/grid.258798.9", 
              "name": [
                "Kyoto Sangyo University, Kyoto, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Terachi", 
            "givenName": "Toru", 
            "id": "sg:person.015763470521.41", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015763470521.41"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Earlham Institute", 
              "id": "https://www.grid.ac/institutes/grid.421605.4", 
              "name": [
                "The Earlham Institute, Norwich, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Haerty", 
            "givenName": "Wilfried", 
            "id": "sg:person.01102147675.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01102147675.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Earlham Institute", 
              "id": "https://www.grid.ac/institutes/grid.421605.4", 
              "name": [
                "The Earlham Institute, Norwich, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Corpas", 
            "givenName": "Manuel", 
            "id": "sg:person.0663634752.75", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663634752.75"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Sainsbury Laboratory", 
              "id": "https://www.grid.ac/institutes/grid.18888.31", 
              "name": [
                "The Sainsbury Laboratory, Norwich, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Kamoun", 
            "givenName": "Sophien", 
            "id": "sg:person.01270641554.56", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01270641554.56"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Goethe University Frankfurt", 
              "id": "https://www.grid.ac/institutes/grid.7839.5", 
              "name": [
                "University of Frankfurt, Frankfurt, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Kahl", 
            "givenName": "G\u00fcnter", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Japan International Research Center for Agricultural Sciences", 
              "id": "https://www.grid.ac/institutes/grid.452611.5", 
              "name": [
                "Japan International Research Center for Agricultural Sciences, Tsukuba, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Takagi", 
            "givenName": "Hiroko", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "International Institute of Tropical Agriculture", 
              "id": "https://www.grid.ac/institutes/grid.425210.0", 
              "name": [
                "International Institute of Tropical Agriculture, Ibadan, Nigeria"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Asiedu", 
            "givenName": "Robert", 
            "id": "sg:person.016237257516.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016237257516.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Kyoto University", 
              "id": "https://www.grid.ac/institutes/grid.258799.8", 
              "name": [
                "Iwate Biotechnology Research Center, Kitakami, Japan", 
                "Kyoto University, Kyoto, Japan"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Terauchi", 
            "givenName": "Ryohei", 
            "id": "sg:person.0723660707.87", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0723660707.87"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1093/bioinformatics/btu033", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000848409"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.5511/plantbiotechnology.27.141", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001684107"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature12309", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002750314", 
              "https://doi.org/10.1038/nature12309"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/gtc.12453", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003349765"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.1017351108", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004253849"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti610", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006001436"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02860700", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009475670", 
              "https://doi.org/10.1007/bf02860700"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02860700", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009475670", 
              "https://doi.org/10.1007/bf02860700"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-6-31", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010551629", 
              "https://doi.org/10.1186/1471-2105-6-31"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-6-31", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010551629", 
              "https://doi.org/10.1186/1471-2105-6-31"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2148-10-79", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010557594", 
              "https://doi.org/10.1186/1471-2148-10-79"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00289272", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011819254", 
              "https://doi.org/10.1007/bf00289272"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btp698", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012031985"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-014-2339-2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012615662", 
              "https://doi.org/10.1007/s00122-014-2339-2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s12042-008-9017-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013821701", 
              "https://doi.org/10.1007/s12042-008-9017-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3732/ajb.1400196", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014156949"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gks596", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014785724"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btm071", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014996474"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-005-2003-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015177322", 
              "https://doi.org/10.1007/s00122-005-2003-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-005-2003-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015177322", 
              "https://doi.org/10.1007/s00122-005-2003-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-005-2003-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015177322", 
              "https://doi.org/10.1007/s00122-005-2003-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s13059-014-0550-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015222646", 
              "https://doi.org/10.1186/s13059-014-0550-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s13059-014-0550-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015222646", 
              "https://doi.org/10.1186/s13059-014-0550-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2013-14-4-r36", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015459845", 
              "https://doi.org/10.1186/gb-2013-14-4-r36"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti310", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015580011"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s12864-016-2531-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018056755", 
              "https://doi.org/10.1186/s12864-016-2531-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/database/bat035", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018929402"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btg112", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019414948"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-313x.2007.03326.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019861827"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msm088", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020427894"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btv351", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021132933"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkw1099", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022885794"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btl213", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022903003"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btr509", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022904685"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.6026/97320630009541", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023735564"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkl976", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026152022"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti609", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026387036"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/tpj.12105", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026485371"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08747", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027862091", 
              "https://doi.org/10.1038/nature08747"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature08747", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027862091", 
              "https://doi.org/10.1038/nature08747"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0003376", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028160249"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.plantsci.2011.10.021", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028253016"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/1755-0998.12258", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028504532"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gks1153", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028540753"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkh379", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029024910"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/j.1834-4453.1972.tb00158.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029175661"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-7-474", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029707193", 
              "https://doi.org/10.1186/1471-2105-7-474"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-7-474", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029707193", 
              "https://doi.org/10.1186/1471-2105-7-474"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nprot.2012.016", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030124536", 
              "https://doi.org/10.1038/nprot.2012.016"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gki107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032266974"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btr011", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032486702"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0021800", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034510199"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature03895", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034843726", 
              "https://doi.org/10.1038/nature03895"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature03895", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034843726", 
              "https://doi.org/10.1038/nature03895"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature03895", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034843726", 
              "https://doi.org/10.1038/nature03895"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btu031", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036320682"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkr1090", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036845050"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g99-001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039710810"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-12-491", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039713283", 
              "https://doi.org/10.1186/1471-2105-12-491"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-12-491", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039713283", 
              "https://doi.org/10.1186/1471-2105-12-491"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.126599.111", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040517131"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.10.4.516", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040860989"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0087138", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041850314"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.5511/plantbiotechnology.12.0726b", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042552792"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bth397", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043301791"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ncomms3274", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043945276", 
              "https://doi.org/10.1038/ncomms3274"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/mst010", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045545793"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/jmbi.2000.5197", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046271071"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.809403", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047191638"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2009-10-3-r25", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049583368", 
              "https://doi.org/10.1186/gb-2009-10-3-r25"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkm1020", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049687931"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkg770", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050668915"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0016717", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050865878"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nprot.2013.084", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051115056", 
              "https://doi.org/10.1038/nprot.2013.084"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btq683", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051356507"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s12862-016-0812-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052154359", 
              "https://doi.org/10.1186/s12862-016-0812-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/s12862-016-0812-z", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052154359", 
              "https://doi.org/10.1186/s12862-016-0812-z"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1371/journal.pone.0075402", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052487246"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btu638", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053282140"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf8040269", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055926176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/jf8040269", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1055926176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1094/mpmi-21-5-0507", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060078737"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1600/036364405775097879", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1068114507"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2135/cropsci2014.10.0725", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069032554"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1082593780", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a107485", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1083619032"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2017-12", 
        "datePublishedReg": "2017-12-01", 
        "description": "BACKGROUND: Root and tuber crops are a major food source in tropical Africa. Among these crops are several species in the monocotyledonous genus Dioscorea collectively known as yam, a staple tuber crop that contributes enormously to the subsistence and socio-cultural lives of millions of people, principally in West and Central Africa. Yam cultivation is constrained by several factors, and yam can be considered a neglected \"orphan\" crop that would benefit from crop improvement efforts. However, the lack of genetic and genomic tools has impeded the improvement of this staple crop.\nRESULTS: To accelerate marker-assisted breeding of yam, we performed genome analysis of white Guinea yam (Dioscorea rotundata) and assembled a 594-Mb genome, 76.4% of which was distributed among 21 linkage groups. In total, we predicted 26,198 genes. Phylogenetic analyses with 2381 conserved genes revealed that Dioscorea is a unique lineage of monocotyledons distinct from the Poales (rice), Arecales (palm), and Zingiberales (banana). The entire Dioscorea genus is characterized by the occurrence of separate male and female plants (dioecy), a feature that has limited efficient yam breeding. To infer the genetics of sex determination, we performed whole-genome resequencing of bulked segregants (quantitative trait locus sequencing [QTL-seq]) in F1 progeny segregating for male and female plants and identified a genomic region associated with female heterogametic (male\u2009=\u2009ZZ, female\u2009=\u2009ZW) sex determination. We further delineated the W locus and used it to develop a molecular marker for sex identification of Guinea yam plants at the seedling stage.\nCONCLUSIONS: Guinea yam belongs to a unique and highly differentiated clade of monocotyledons. The genome analyses and sex-linked marker development performed in this study should greatly accelerate marker-assisted breeding of Guinea yam. In addition, our QTL-seq approach can be utilized in genetic studies of other outcrossing crops and organisms with highly heterozygous genomes. Genomic analysis of orphan crops such as yam promotes efforts to improve food security and the sustainability of tropical agriculture.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/s12915-017-0419-x", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.7745923", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.7746030", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.3864583", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.7747067", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1032884", 
            "issn": [
              "1478-5854", 
              "1741-7007"
            ], 
            "name": "BMC Biology", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "15"
          }
        ], 
        "name": "Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination", 
        "pagination": "86", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "b8ee64e41c9be524390c00a829d635a48666425c519f5edb22952516d665598c"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "28927400"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "101190720"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/s12915-017-0419-x"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1091843119"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/s12915-017-0419-x", 
          "https://app.dimensions.ai/details/publication/pub.1091843119"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T19:17", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8678_00000570.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2Fs12915-017-0419-x"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12915-017-0419-x'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12915-017-0419-x'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12915-017-0419-x'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12915-017-0419-x'


     

    This table displays all metadata directly associated to this object as RDF triples.

    591 TRIPLES      21 PREDICATES      110 URIs      28 LITERALS      16 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/s12915-017-0419-x schema:about N091b4825bf0748b1affd8ad2c4147c11
    2 N6d3bd1dcd14c4bd495c74fabcfb70fa3
    3 N7a7e01473e8d40139bebadaab2310993
    4 N86523c0b282d4095a32fcb92513de91c
    5 Na782136008bb4e0698c10e17e6b2874e
    6 Ndcf7de7dda5e45b5b6e7305186b234da
    7 Nf9949a50e5e0495c99ac6b3c052a08fe
    8 anzsrc-for:06
    9 anzsrc-for:0604
    10 schema:author N208e3e423d07454d81632bdda6b9e71c
    11 schema:citation sg:pub.10.1007/bf00289272
    12 sg:pub.10.1007/bf02860700
    13 sg:pub.10.1007/s00122-005-2003-y
    14 sg:pub.10.1007/s00122-014-2339-2
    15 sg:pub.10.1007/s12042-008-9017-y
    16 sg:pub.10.1038/nature03895
    17 sg:pub.10.1038/nature08747
    18 sg:pub.10.1038/nature12309
    19 sg:pub.10.1038/ncomms3274
    20 sg:pub.10.1038/nprot.2012.016
    21 sg:pub.10.1038/nprot.2013.084
    22 sg:pub.10.1186/1471-2105-12-491
    23 sg:pub.10.1186/1471-2105-6-31
    24 sg:pub.10.1186/1471-2105-7-474
    25 sg:pub.10.1186/1471-2148-10-79
    26 sg:pub.10.1186/gb-2009-10-3-r25
    27 sg:pub.10.1186/gb-2013-14-4-r36
    28 sg:pub.10.1186/s12862-016-0812-z
    29 sg:pub.10.1186/s12864-016-2531-7
    30 sg:pub.10.1186/s13059-014-0550-8
    31 https://app.dimensions.ai/details/publication/pub.1082593780
    32 https://doi.org/10.1002/j.1834-4453.1972.tb00158.x
    33 https://doi.org/10.1006/jmbi.2000.5197
    34 https://doi.org/10.1016/j.plantsci.2011.10.021
    35 https://doi.org/10.1021/jf8040269
    36 https://doi.org/10.1073/pnas.1017351108
    37 https://doi.org/10.1093/bioinformatics/btg112
    38 https://doi.org/10.1093/bioinformatics/bth397
    39 https://doi.org/10.1093/bioinformatics/bti310
    40 https://doi.org/10.1093/bioinformatics/bti609
    41 https://doi.org/10.1093/bioinformatics/bti610
    42 https://doi.org/10.1093/bioinformatics/btl213
    43 https://doi.org/10.1093/bioinformatics/btm071
    44 https://doi.org/10.1093/bioinformatics/btp698
    45 https://doi.org/10.1093/bioinformatics/btq683
    46 https://doi.org/10.1093/bioinformatics/btr011
    47 https://doi.org/10.1093/bioinformatics/btr509
    48 https://doi.org/10.1093/bioinformatics/btu031
    49 https://doi.org/10.1093/bioinformatics/btu033
    50 https://doi.org/10.1093/bioinformatics/btu638
    51 https://doi.org/10.1093/bioinformatics/btv351
    52 https://doi.org/10.1093/database/bat035
    53 https://doi.org/10.1093/molbev/msm088
    54 https://doi.org/10.1093/molbev/mst010
    55 https://doi.org/10.1093/nar/gkg770
    56 https://doi.org/10.1093/nar/gkh379
    57 https://doi.org/10.1093/nar/gki107
    58 https://doi.org/10.1093/nar/gkl976
    59 https://doi.org/10.1093/nar/gkm1020
    60 https://doi.org/10.1093/nar/gkr1090
    61 https://doi.org/10.1093/nar/gks1153
    62 https://doi.org/10.1093/nar/gks596
    63 https://doi.org/10.1093/nar/gkw1099
    64 https://doi.org/10.1093/oxfordjournals.jhered.a107485
    65 https://doi.org/10.1094/mpmi-21-5-0507
    66 https://doi.org/10.1101/gr.10.4.516
    67 https://doi.org/10.1101/gr.126599.111
    68 https://doi.org/10.1101/gr.809403
    69 https://doi.org/10.1111/1755-0998.12258
    70 https://doi.org/10.1111/gtc.12453
    71 https://doi.org/10.1111/j.1365-313x.2007.03326.x
    72 https://doi.org/10.1111/tpj.12105
    73 https://doi.org/10.1139/g99-001
    74 https://doi.org/10.1371/journal.pone.0003376
    75 https://doi.org/10.1371/journal.pone.0016717
    76 https://doi.org/10.1371/journal.pone.0021800
    77 https://doi.org/10.1371/journal.pone.0075402
    78 https://doi.org/10.1371/journal.pone.0087138
    79 https://doi.org/10.1600/036364405775097879
    80 https://doi.org/10.2135/cropsci2014.10.0725
    81 https://doi.org/10.3732/ajb.1400196
    82 https://doi.org/10.5511/plantbiotechnology.12.0726b
    83 https://doi.org/10.5511/plantbiotechnology.27.141
    84 https://doi.org/10.6026/97320630009541
    85 schema:datePublished 2017-12
    86 schema:datePublishedReg 2017-12-01
    87 schema:description BACKGROUND: Root and tuber crops are a major food source in tropical Africa. Among these crops are several species in the monocotyledonous genus Dioscorea collectively known as yam, a staple tuber crop that contributes enormously to the subsistence and socio-cultural lives of millions of people, principally in West and Central Africa. Yam cultivation is constrained by several factors, and yam can be considered a neglected "orphan" crop that would benefit from crop improvement efforts. However, the lack of genetic and genomic tools has impeded the improvement of this staple crop. RESULTS: To accelerate marker-assisted breeding of yam, we performed genome analysis of white Guinea yam (Dioscorea rotundata) and assembled a 594-Mb genome, 76.4% of which was distributed among 21 linkage groups. In total, we predicted 26,198 genes. Phylogenetic analyses with 2381 conserved genes revealed that Dioscorea is a unique lineage of monocotyledons distinct from the Poales (rice), Arecales (palm), and Zingiberales (banana). The entire Dioscorea genus is characterized by the occurrence of separate male and female plants (dioecy), a feature that has limited efficient yam breeding. To infer the genetics of sex determination, we performed whole-genome resequencing of bulked segregants (quantitative trait locus sequencing [QTL-seq]) in F1 progeny segregating for male and female plants and identified a genomic region associated with female heterogametic (male = ZZ, female = ZW) sex determination. We further delineated the W locus and used it to develop a molecular marker for sex identification of Guinea yam plants at the seedling stage. CONCLUSIONS: Guinea yam belongs to a unique and highly differentiated clade of monocotyledons. The genome analyses and sex-linked marker development performed in this study should greatly accelerate marker-assisted breeding of Guinea yam. In addition, our QTL-seq approach can be utilized in genetic studies of other outcrossing crops and organisms with highly heterozygous genomes. Genomic analysis of orphan crops such as yam promotes efforts to improve food security and the sustainability of tropical agriculture.
    88 schema:genre research_article
    89 schema:inLanguage en
    90 schema:isAccessibleForFree true
    91 schema:isPartOf Nca57d7e1f7ee4b88b542962cd5556194
    92 Nf8c20c3b11f7440588a768e520a943bd
    93 sg:journal.1032884
    94 schema:name Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination
    95 schema:pagination 86
    96 schema:productId N2a342586fd794e109e6961eeeb5db31d
    97 N8bdf7d4bd6074b72ac06686c3e9143dd
    98 N8f16a64d13474bbea4e30f6d63fa8718
    99 Nc65457530fd14000a1536d13de294e75
    100 Ne16a188f21334128b6c8131916f54cd8
    101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091843119
    102 https://doi.org/10.1186/s12915-017-0419-x
    103 schema:sdDatePublished 2019-04-10T19:17
    104 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    105 schema:sdPublisher N035ddc1498114b4a853df9a50a971cc2
    106 schema:url http://link.springer.com/10.1186%2Fs12915-017-0419-x
    107 sgo:license sg:explorer/license/
    108 sgo:sdDataset articles
    109 rdf:type schema:ScholarlyArticle
    110 N013ef01a677f47ffa561ec641290d274 rdf:first sg:person.0663634752.75
    111 rdf:rest N93fc8bfa24a14fd89f8b3c77c62b456a
    112 N035ddc1498114b4a853df9a50a971cc2 schema:name Springer Nature - SN SciGraph project
    113 rdf:type schema:Organization
    114 N091b4825bf0748b1affd8ad2c4147c11 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    115 schema:name Dioscorea
    116 rdf:type schema:DefinedTerm
    117 N0fc1ce4493d0448b80d92462b0782b70 rdf:first N161f4751fe3c498e870fd57c7909f4c6
    118 rdf:rest Na70a9ea6cde14e94a7d926bb80d39f89
    119 N158d292cb7c049799f74f8f38057d83f schema:name Okinawa Agricultural Research Center, Naha, Japan
    120 rdf:type schema:Organization
    121 N161f4751fe3c498e870fd57c7909f4c6 schema:affiliation N158d292cb7c049799f74f8f38057d83f
    122 schema:familyName Urasaki
    123 schema:givenName Naoya
    124 rdf:type schema:Person
    125 N17bcdd9a1d3c4eab97a81b5e20ad9095 rdf:first sg:person.0723660707.87
    126 rdf:rest rdf:nil
    127 N208e3e423d07454d81632bdda6b9e71c rdf:first sg:person.0712740612.86
    128 rdf:rest N44613ee61d784c389cef76c78f862b6e
    129 N2340f2ac2cc644fb9a987db0f04c1985 rdf:first sg:person.0651751221.31
    130 rdf:rest N2f92b6dfc5b34920ad138fb3196fbd18
    131 N25ff731b710a448bbbfc61a02b6f8bbd schema:affiliation https://www.grid.ac/institutes/grid.31432.37
    132 schema:familyName Yoshida
    133 schema:givenName Kentaro
    134 rdf:type schema:Person
    135 N27acddb9d9814347942a38fe60ff35b8 rdf:first sg:person.0606615113.22
    136 rdf:rest N9a23fd0650fc4baa9c8cc8210eace426
    137 N2a342586fd794e109e6961eeeb5db31d schema:name nlm_unique_id
    138 schema:value 101190720
    139 rdf:type schema:PropertyValue
    140 N2f92b6dfc5b34920ad138fb3196fbd18 rdf:first sg:person.01236332443.91
    141 rdf:rest N837410d4465b4057ae94e47bcd02baa2
    142 N40caf8de042b469c92ca1e20aa687243 rdf:first sg:person.014431552103.34
    143 rdf:rest Nd4c113bd9f5444938b0cf2a341aab4f2
    144 N44613ee61d784c389cef76c78f862b6e rdf:first sg:person.01001663025.54
    145 rdf:rest Ne59965e876c4430fb81b9fb63fcd36b1
    146 N47a9331c104249f3b07ea678f4ffead4 rdf:first sg:person.0701414433.74
    147 rdf:rest N7ac80d13a18642928309e3d622db8796
    148 N4d8a157162344a728f7d93af8b5039ac rdf:first sg:person.0662022601.12
    149 rdf:rest Nab4eb2c518d54085b21609a57761e880
    150 N6434fe13d9394db595fb300e1ef4b671 rdf:first sg:person.01037415010.80
    151 rdf:rest Nb0ecc844e191477885ed083b73edd665
    152 N6d3bd1dcd14c4bd495c74fabcfb70fa3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    153 schema:name Genome, Plant
    154 rdf:type schema:DefinedTerm
    155 N73a77b8042cc4c9db435957cf664e8d9 rdf:first Na5fea48a924047879d85edd063dcdca8
    156 rdf:rest Neb41e5c653ad425db9e6eca0948fc57d
    157 N7a7e01473e8d40139bebadaab2310993 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    158 schema:name Biomarkers
    159 rdf:type schema:DefinedTerm
    160 N7ac80d13a18642928309e3d622db8796 rdf:first sg:person.010176563467.37
    161 rdf:rest Na7cb0167047a440aabe758b490d064ed
    162 N7c06d45dc9ba4608a7fa0cbdb132cff6 rdf:first sg:person.0605447320.85
    163 rdf:rest Ne5898150564c4e5183eff803719b0772
    164 N837410d4465b4057ae94e47bcd02baa2 rdf:first sg:person.015763470521.41
    165 rdf:rest Nfb34e0aa5b42419784279e593778fdf8
    166 N86523c0b282d4095a32fcb92513de91c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    167 schema:name Whole Genome Sequencing
    168 rdf:type schema:DefinedTerm
    169 N8bdf7d4bd6074b72ac06686c3e9143dd schema:name pubmed_id
    170 schema:value 28927400
    171 rdf:type schema:PropertyValue
    172 N8f16a64d13474bbea4e30f6d63fa8718 schema:name readcube_id
    173 schema:value b8ee64e41c9be524390c00a829d635a48666425c519f5edb22952516d665598c
    174 rdf:type schema:PropertyValue
    175 N900057765c3f4da4aadb00f01730f2a0 schema:affiliation https://www.grid.ac/institutes/grid.7839.5
    176 schema:familyName Kahl
    177 schema:givenName Günter
    178 rdf:type schema:Person
    179 N93fc8bfa24a14fd89f8b3c77c62b456a rdf:first sg:person.01270641554.56
    180 rdf:rest N9fb80b7a41a547989f1aa603f2bf0221
    181 N9a23fd0650fc4baa9c8cc8210eace426 rdf:first sg:person.01261062107.83
    182 rdf:rest N6434fe13d9394db595fb300e1ef4b671
    183 N9fb80b7a41a547989f1aa603f2bf0221 rdf:first N900057765c3f4da4aadb00f01730f2a0
    184 rdf:rest N73a77b8042cc4c9db435957cf664e8d9
    185 Na5fea48a924047879d85edd063dcdca8 schema:affiliation https://www.grid.ac/institutes/grid.452611.5
    186 schema:familyName Takagi
    187 schema:givenName Hiroko
    188 rdf:type schema:Person
    189 Na70a9ea6cde14e94a7d926bb80d39f89 rdf:first Nce132e311e10406b81a3710ebb21ccde
    190 rdf:rest N40caf8de042b469c92ca1e20aa687243
    191 Na782136008bb4e0698c10e17e6b2874e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    192 schema:name Plant Breeding
    193 rdf:type schema:DefinedTerm
    194 Na7cb0167047a440aabe758b490d064ed rdf:first sg:person.0742377740.43
    195 rdf:rest Nc590d712f38b472aa0a5572bea901046
    196 Nab4eb2c518d54085b21609a57761e880 rdf:first sg:person.01143653670.02
    197 rdf:rest Nfa9b4bd9c4cd48398293a0ca88dcf35f
    198 Nb0ecc844e191477885ed083b73edd665 rdf:first N25ff731b710a448bbbfc61a02b6f8bbd
    199 rdf:rest N7c06d45dc9ba4608a7fa0cbdb132cff6
    200 Nb79d1a6e985c41fcb1509d9153cf3922 rdf:first sg:person.01100376420.07
    201 rdf:rest N0fc1ce4493d0448b80d92462b0782b70
    202 Nbd85026293984e2893168125e94fa40a rdf:first sg:person.014750662303.55
    203 rdf:rest N4d8a157162344a728f7d93af8b5039ac
    204 Nc590d712f38b472aa0a5572bea901046 rdf:first sg:person.016143714471.06
    205 rdf:rest N2340f2ac2cc644fb9a987db0f04c1985
    206 Nc65457530fd14000a1536d13de294e75 schema:name dimensions_id
    207 schema:value pub.1091843119
    208 rdf:type schema:PropertyValue
    209 Nca57d7e1f7ee4b88b542962cd5556194 schema:issueNumber 1
    210 rdf:type schema:PublicationIssue
    211 Nce132e311e10406b81a3710ebb21ccde schema:affiliation https://www.grid.ac/institutes/grid.263518.b
    212 schema:familyName Matsumura
    213 schema:givenName Hideo
    214 rdf:type schema:Person
    215 Nd4c113bd9f5444938b0cf2a341aab4f2 rdf:first sg:person.01224514555.29
    216 rdf:rest Nbd85026293984e2893168125e94fa40a
    217 Ndcf7de7dda5e45b5b6e7305186b234da schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    218 schema:name Quantitative Trait Loci
    219 rdf:type schema:DefinedTerm
    220 Ne16a188f21334128b6c8131916f54cd8 schema:name doi
    221 schema:value 10.1186/s12915-017-0419-x
    222 rdf:type schema:PropertyValue
    223 Ne5898150564c4e5183eff803719b0772 rdf:first sg:person.0620214511.70
    224 rdf:rest Nb79d1a6e985c41fcb1509d9153cf3922
    225 Ne59965e876c4430fb81b9fb63fcd36b1 rdf:first sg:person.01032263220.99
    226 rdf:rest N27acddb9d9814347942a38fe60ff35b8
    227 Neb41e5c653ad425db9e6eca0948fc57d rdf:first sg:person.016237257516.14
    228 rdf:rest N17bcdd9a1d3c4eab97a81b5e20ad9095
    229 Nf8c20c3b11f7440588a768e520a943bd schema:volumeNumber 15
    230 rdf:type schema:PublicationVolume
    231 Nf9949a50e5e0495c99ac6b3c052a08fe schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    232 schema:name Crops, Agricultural
    233 rdf:type schema:DefinedTerm
    234 Nfa9b4bd9c4cd48398293a0ca88dcf35f rdf:first sg:person.01364103416.17
    235 rdf:rest N47a9331c104249f3b07ea678f4ffead4
    236 Nfb34e0aa5b42419784279e593778fdf8 rdf:first sg:person.01102147675.34
    237 rdf:rest N013ef01a677f47ffa561ec641290d274
    238 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    239 schema:name Biological Sciences
    240 rdf:type schema:DefinedTerm
    241 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    242 schema:name Genetics
    243 rdf:type schema:DefinedTerm
    244 sg:grant.3864583 http://pending.schema.org/fundedItem sg:pub.10.1186/s12915-017-0419-x
    245 rdf:type schema:MonetaryGrant
    246 sg:grant.7745923 http://pending.schema.org/fundedItem sg:pub.10.1186/s12915-017-0419-x
    247 rdf:type schema:MonetaryGrant
    248 sg:grant.7746030 http://pending.schema.org/fundedItem sg:pub.10.1186/s12915-017-0419-x
    249 rdf:type schema:MonetaryGrant
    250 sg:grant.7747067 http://pending.schema.org/fundedItem sg:pub.10.1186/s12915-017-0419-x
    251 rdf:type schema:MonetaryGrant
    252 sg:journal.1032884 schema:issn 1478-5854
    253 1741-7007
    254 schema:name BMC Biology
    255 rdf:type schema:Periodical
    256 sg:person.01001663025.54 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    257 schema:familyName Natsume
    258 schema:givenName Satoshi
    259 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01001663025.54
    260 rdf:type schema:Person
    261 sg:person.010176563467.37 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    262 schema:familyName Bhattacharjee
    263 schema:givenName Ranjana
    264 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010176563467.37
    265 rdf:type schema:Person
    266 sg:person.01032263220.99 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    267 schema:familyName Takagi
    268 schema:givenName Hiroki
    269 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032263220.99
    270 rdf:type schema:Person
    271 sg:person.01037415010.80 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    272 schema:familyName Shimizu
    273 schema:givenName Motoki
    274 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037415010.80
    275 rdf:type schema:Person
    276 sg:person.01100376420.07 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    277 schema:familyName Abe
    278 schema:givenName Akira
    279 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100376420.07
    280 rdf:type schema:Person
    281 sg:person.01102147675.34 schema:affiliation https://www.grid.ac/institutes/grid.421605.4
    282 schema:familyName Haerty
    283 schema:givenName Wilfried
    284 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01102147675.34
    285 rdf:type schema:Person
    286 sg:person.01143653670.02 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    287 schema:familyName Girma
    288 schema:givenName Gezahegn
    289 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01143653670.02
    290 rdf:type schema:Person
    291 sg:person.01224514555.29 schema:affiliation https://www.grid.ac/institutes/grid.452611.5
    292 schema:familyName Yamanaka
    293 schema:givenName Shinsuke
    294 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01224514555.29
    295 rdf:type schema:Person
    296 sg:person.01236332443.91 schema:affiliation https://www.grid.ac/institutes/grid.258798.9
    297 schema:familyName Tsujimura
    298 schema:givenName Mai
    299 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01236332443.91
    300 rdf:type schema:Person
    301 sg:person.01261062107.83 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    302 schema:familyName Yaegashi
    303 schema:givenName Hiroki
    304 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01261062107.83
    305 rdf:type schema:Person
    306 sg:person.01270641554.56 schema:affiliation https://www.grid.ac/institutes/grid.18888.31
    307 schema:familyName Kamoun
    308 schema:givenName Sophien
    309 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01270641554.56
    310 rdf:type schema:Person
    311 sg:person.01364103416.17 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    312 schema:familyName Lopez-Montes
    313 schema:givenName Antonio
    314 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01364103416.17
    315 rdf:type schema:Person
    316 sg:person.014431552103.34 schema:affiliation https://www.grid.ac/institutes/grid.410772.7
    317 schema:familyName Babil
    318 schema:givenName Pachakkil
    319 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014431552103.34
    320 rdf:type schema:Person
    321 sg:person.014750662303.55 schema:affiliation https://www.grid.ac/institutes/grid.452611.5
    322 schema:familyName Matsumoto
    323 schema:givenName Ryo
    324 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014750662303.55
    325 rdf:type schema:Person
    326 sg:person.015763470521.41 schema:affiliation https://www.grid.ac/institutes/grid.258798.9
    327 schema:familyName Terachi
    328 schema:givenName Toru
    329 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015763470521.41
    330 rdf:type schema:Person
    331 sg:person.016143714471.06 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    332 schema:familyName Kumar
    333 schema:givenName P. Lava
    334 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016143714471.06
    335 rdf:type schema:Person
    336 sg:person.016237257516.14 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    337 schema:familyName Asiedu
    338 schema:givenName Robert
    339 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016237257516.14
    340 rdf:type schema:Person
    341 sg:person.0605447320.85 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    342 schema:familyName Uemura
    343 schema:givenName Aiko
    344 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605447320.85
    345 rdf:type schema:Person
    346 sg:person.0606615113.22 schema:affiliation https://www.grid.ac/institutes/grid.421605.4
    347 schema:familyName White
    348 schema:givenName Benjamen
    349 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606615113.22
    350 rdf:type schema:Person
    351 sg:person.0620214511.70 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    352 schema:familyName Oikawa
    353 schema:givenName Kaori
    354 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620214511.70
    355 rdf:type schema:Person
    356 sg:person.0651751221.31 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    357 schema:familyName Rabbi
    358 schema:givenName Ismail
    359 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0651751221.31
    360 rdf:type schema:Person
    361 sg:person.0662022601.12 schema:affiliation https://www.grid.ac/institutes/grid.452611.5
    362 schema:familyName Muranaka
    363 schema:givenName Satoru
    364 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0662022601.12
    365 rdf:type schema:Person
    366 sg:person.0663634752.75 schema:affiliation https://www.grid.ac/institutes/grid.421605.4
    367 schema:familyName Corpas
    368 schema:givenName Manuel
    369 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663634752.75
    370 rdf:type schema:Person
    371 sg:person.0701414433.74 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    372 schema:familyName Gedil
    373 schema:givenName Melaku
    374 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0701414433.74
    375 rdf:type schema:Person
    376 sg:person.0712740612.86 schema:affiliation https://www.grid.ac/institutes/grid.277489.7
    377 schema:familyName Tamiru
    378 schema:givenName Muluneh
    379 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712740612.86
    380 rdf:type schema:Person
    381 sg:person.0723660707.87 schema:affiliation https://www.grid.ac/institutes/grid.258799.8
    382 schema:familyName Terauchi
    383 schema:givenName Ryohei
    384 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0723660707.87
    385 rdf:type schema:Person
    386 sg:person.0742377740.43 schema:affiliation https://www.grid.ac/institutes/grid.425210.0
    387 schema:familyName Abberton
    388 schema:givenName Michael
    389 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0742377740.43
    390 rdf:type schema:Person
    391 sg:pub.10.1007/bf00289272 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011819254
    392 https://doi.org/10.1007/bf00289272
    393 rdf:type schema:CreativeWork
    394 sg:pub.10.1007/bf02860700 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009475670
    395 https://doi.org/10.1007/bf02860700
    396 rdf:type schema:CreativeWork
    397 sg:pub.10.1007/s00122-005-2003-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1015177322
    398 https://doi.org/10.1007/s00122-005-2003-y
    399 rdf:type schema:CreativeWork
    400 sg:pub.10.1007/s00122-014-2339-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012615662
    401 https://doi.org/10.1007/s00122-014-2339-2
    402 rdf:type schema:CreativeWork
    403 sg:pub.10.1007/s12042-008-9017-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1013821701
    404 https://doi.org/10.1007/s12042-008-9017-y
    405 rdf:type schema:CreativeWork
    406 sg:pub.10.1038/nature03895 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034843726
    407 https://doi.org/10.1038/nature03895
    408 rdf:type schema:CreativeWork
    409 sg:pub.10.1038/nature08747 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027862091
    410 https://doi.org/10.1038/nature08747
    411 rdf:type schema:CreativeWork
    412 sg:pub.10.1038/nature12309 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002750314
    413 https://doi.org/10.1038/nature12309
    414 rdf:type schema:CreativeWork
    415 sg:pub.10.1038/ncomms3274 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043945276
    416 https://doi.org/10.1038/ncomms3274
    417 rdf:type schema:CreativeWork
    418 sg:pub.10.1038/nprot.2012.016 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030124536
    419 https://doi.org/10.1038/nprot.2012.016
    420 rdf:type schema:CreativeWork
    421 sg:pub.10.1038/nprot.2013.084 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051115056
    422 https://doi.org/10.1038/nprot.2013.084
    423 rdf:type schema:CreativeWork
    424 sg:pub.10.1186/1471-2105-12-491 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039713283
    425 https://doi.org/10.1186/1471-2105-12-491
    426 rdf:type schema:CreativeWork
    427 sg:pub.10.1186/1471-2105-6-31 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010551629
    428 https://doi.org/10.1186/1471-2105-6-31
    429 rdf:type schema:CreativeWork
    430 sg:pub.10.1186/1471-2105-7-474 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029707193
    431 https://doi.org/10.1186/1471-2105-7-474
    432 rdf:type schema:CreativeWork
    433 sg:pub.10.1186/1471-2148-10-79 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010557594
    434 https://doi.org/10.1186/1471-2148-10-79
    435 rdf:type schema:CreativeWork
    436 sg:pub.10.1186/gb-2009-10-3-r25 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049583368
    437 https://doi.org/10.1186/gb-2009-10-3-r25
    438 rdf:type schema:CreativeWork
    439 sg:pub.10.1186/gb-2013-14-4-r36 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015459845
    440 https://doi.org/10.1186/gb-2013-14-4-r36
    441 rdf:type schema:CreativeWork
    442 sg:pub.10.1186/s12862-016-0812-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1052154359
    443 https://doi.org/10.1186/s12862-016-0812-z
    444 rdf:type schema:CreativeWork
    445 sg:pub.10.1186/s12864-016-2531-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018056755
    446 https://doi.org/10.1186/s12864-016-2531-7
    447 rdf:type schema:CreativeWork
    448 sg:pub.10.1186/s13059-014-0550-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015222646
    449 https://doi.org/10.1186/s13059-014-0550-8
    450 rdf:type schema:CreativeWork
    451 https://app.dimensions.ai/details/publication/pub.1082593780 schema:CreativeWork
    452 https://doi.org/10.1002/j.1834-4453.1972.tb00158.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1029175661
    453 rdf:type schema:CreativeWork
    454 https://doi.org/10.1006/jmbi.2000.5197 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046271071
    455 rdf:type schema:CreativeWork
    456 https://doi.org/10.1016/j.plantsci.2011.10.021 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028253016
    457 rdf:type schema:CreativeWork
    458 https://doi.org/10.1021/jf8040269 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055926176
    459 rdf:type schema:CreativeWork
    460 https://doi.org/10.1073/pnas.1017351108 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004253849
    461 rdf:type schema:CreativeWork
    462 https://doi.org/10.1093/bioinformatics/btg112 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019414948
    463 rdf:type schema:CreativeWork
    464 https://doi.org/10.1093/bioinformatics/bth397 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043301791
    465 rdf:type schema:CreativeWork
    466 https://doi.org/10.1093/bioinformatics/bti310 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015580011
    467 rdf:type schema:CreativeWork
    468 https://doi.org/10.1093/bioinformatics/bti609 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026387036
    469 rdf:type schema:CreativeWork
    470 https://doi.org/10.1093/bioinformatics/bti610 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006001436
    471 rdf:type schema:CreativeWork
    472 https://doi.org/10.1093/bioinformatics/btl213 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022903003
    473 rdf:type schema:CreativeWork
    474 https://doi.org/10.1093/bioinformatics/btm071 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014996474
    475 rdf:type schema:CreativeWork
    476 https://doi.org/10.1093/bioinformatics/btp698 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012031985
    477 rdf:type schema:CreativeWork
    478 https://doi.org/10.1093/bioinformatics/btq683 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051356507
    479 rdf:type schema:CreativeWork
    480 https://doi.org/10.1093/bioinformatics/btr011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032486702
    481 rdf:type schema:CreativeWork
    482 https://doi.org/10.1093/bioinformatics/btr509 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022904685
    483 rdf:type schema:CreativeWork
    484 https://doi.org/10.1093/bioinformatics/btu031 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036320682
    485 rdf:type schema:CreativeWork
    486 https://doi.org/10.1093/bioinformatics/btu033 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000848409
    487 rdf:type schema:CreativeWork
    488 https://doi.org/10.1093/bioinformatics/btu638 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053282140
    489 rdf:type schema:CreativeWork
    490 https://doi.org/10.1093/bioinformatics/btv351 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021132933
    491 rdf:type schema:CreativeWork
    492 https://doi.org/10.1093/database/bat035 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018929402
    493 rdf:type schema:CreativeWork
    494 https://doi.org/10.1093/molbev/msm088 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020427894
    495 rdf:type schema:CreativeWork
    496 https://doi.org/10.1093/molbev/mst010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045545793
    497 rdf:type schema:CreativeWork
    498 https://doi.org/10.1093/nar/gkg770 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050668915
    499 rdf:type schema:CreativeWork
    500 https://doi.org/10.1093/nar/gkh379 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029024910
    501 rdf:type schema:CreativeWork
    502 https://doi.org/10.1093/nar/gki107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032266974
    503 rdf:type schema:CreativeWork
    504 https://doi.org/10.1093/nar/gkl976 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026152022
    505 rdf:type schema:CreativeWork
    506 https://doi.org/10.1093/nar/gkm1020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049687931
    507 rdf:type schema:CreativeWork
    508 https://doi.org/10.1093/nar/gkr1090 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036845050
    509 rdf:type schema:CreativeWork
    510 https://doi.org/10.1093/nar/gks1153 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028540753
    511 rdf:type schema:CreativeWork
    512 https://doi.org/10.1093/nar/gks596 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014785724
    513 rdf:type schema:CreativeWork
    514 https://doi.org/10.1093/nar/gkw1099 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022885794
    515 rdf:type schema:CreativeWork
    516 https://doi.org/10.1093/oxfordjournals.jhered.a107485 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083619032
    517 rdf:type schema:CreativeWork
    518 https://doi.org/10.1094/mpmi-21-5-0507 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060078737
    519 rdf:type schema:CreativeWork
    520 https://doi.org/10.1101/gr.10.4.516 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040860989
    521 rdf:type schema:CreativeWork
    522 https://doi.org/10.1101/gr.126599.111 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040517131
    523 rdf:type schema:CreativeWork
    524 https://doi.org/10.1101/gr.809403 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047191638
    525 rdf:type schema:CreativeWork
    526 https://doi.org/10.1111/1755-0998.12258 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028504532
    527 rdf:type schema:CreativeWork
    528 https://doi.org/10.1111/gtc.12453 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003349765
    529 rdf:type schema:CreativeWork
    530 https://doi.org/10.1111/j.1365-313x.2007.03326.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1019861827
    531 rdf:type schema:CreativeWork
    532 https://doi.org/10.1111/tpj.12105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026485371
    533 rdf:type schema:CreativeWork
    534 https://doi.org/10.1139/g99-001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039710810
    535 rdf:type schema:CreativeWork
    536 https://doi.org/10.1371/journal.pone.0003376 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028160249
    537 rdf:type schema:CreativeWork
    538 https://doi.org/10.1371/journal.pone.0016717 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050865878
    539 rdf:type schema:CreativeWork
    540 https://doi.org/10.1371/journal.pone.0021800 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034510199
    541 rdf:type schema:CreativeWork
    542 https://doi.org/10.1371/journal.pone.0075402 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052487246
    543 rdf:type schema:CreativeWork
    544 https://doi.org/10.1371/journal.pone.0087138 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041850314
    545 rdf:type schema:CreativeWork
    546 https://doi.org/10.1600/036364405775097879 schema:sameAs https://app.dimensions.ai/details/publication/pub.1068114507
    547 rdf:type schema:CreativeWork
    548 https://doi.org/10.2135/cropsci2014.10.0725 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069032554
    549 rdf:type schema:CreativeWork
    550 https://doi.org/10.3732/ajb.1400196 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014156949
    551 rdf:type schema:CreativeWork
    552 https://doi.org/10.5511/plantbiotechnology.12.0726b schema:sameAs https://app.dimensions.ai/details/publication/pub.1042552792
    553 rdf:type schema:CreativeWork
    554 https://doi.org/10.5511/plantbiotechnology.27.141 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001684107
    555 rdf:type schema:CreativeWork
    556 https://doi.org/10.6026/97320630009541 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023735564
    557 rdf:type schema:CreativeWork
    558 https://www.grid.ac/institutes/grid.18888.31 schema:alternateName Sainsbury Laboratory
    559 schema:name The Sainsbury Laboratory, Norwich, UK
    560 rdf:type schema:Organization
    561 https://www.grid.ac/institutes/grid.258798.9 schema:alternateName Kyoto Sangyo University
    562 schema:name Kyoto Sangyo University, Kyoto, Japan
    563 rdf:type schema:Organization
    564 https://www.grid.ac/institutes/grid.258799.8 schema:alternateName Kyoto University
    565 schema:name Iwate Biotechnology Research Center, Kitakami, Japan
    566 Kyoto University, Kyoto, Japan
    567 rdf:type schema:Organization
    568 https://www.grid.ac/institutes/grid.263518.b schema:alternateName Shinshu University
    569 schema:name Shinshu University, Nagano, Japan
    570 rdf:type schema:Organization
    571 https://www.grid.ac/institutes/grid.277489.7 schema:alternateName Iwate Biotechnology Research Center
    572 schema:name Iwate Biotechnology Research Center, Kitakami, Japan
    573 rdf:type schema:Organization
    574 https://www.grid.ac/institutes/grid.31432.37 schema:alternateName Kobe University
    575 schema:name Kobe University, Kobe, Japan
    576 rdf:type schema:Organization
    577 https://www.grid.ac/institutes/grid.410772.7 schema:alternateName Tokyo University of Agriculture
    578 schema:name Tokyo University of Agriculture, Tokyo, Japan
    579 rdf:type schema:Organization
    580 https://www.grid.ac/institutes/grid.421605.4 schema:alternateName Earlham Institute
    581 schema:name The Earlham Institute, Norwich, UK
    582 rdf:type schema:Organization
    583 https://www.grid.ac/institutes/grid.425210.0 schema:alternateName International Institute of Tropical Agriculture
    584 schema:name International Institute of Tropical Agriculture, Ibadan, Nigeria
    585 rdf:type schema:Organization
    586 https://www.grid.ac/institutes/grid.452611.5 schema:alternateName Japan International Research Center for Agricultural Sciences
    587 schema:name Japan International Research Center for Agricultural Sciences, Tsukuba, Japan
    588 rdf:type schema:Organization
    589 https://www.grid.ac/institutes/grid.7839.5 schema:alternateName Goethe University Frankfurt
    590 schema:name University of Frankfurt, Frankfurt, Germany
    591 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...