Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-04-12

AUTHORS

Pibiao Shi, Kateta Malangisha Guy, Weifang Wu, Bingsheng Fang, Jinghua Yang, Mingfang Zhang, Zhongyuan Hu

ABSTRACT

BACKGROUND: The plant-specific TCP transcription factor family, which is involved in the regulation of cell growth and proliferation, performs diverse functions in multiple aspects of plant growth and development. However, no comprehensive analysis of the TCP family in watermelon (Citrullus lanatus) has been undertaken previously. RESULTS: A total of 27 watermelon TCP encoding genes distributed on nine chromosomes were identified. Phylogenetic analysis clustered the genes into 11 distinct subgroups. Furthermore, phylogenetic and structural analyses distinguished two homology classes within the ClTCP family, designated Class I and Class II. The Class II genes were differentiated into two subclasses, the CIN subclass and the CYC/TB1 subclass. The expression patterns of all members were determined by semi-quantitative PCR. The functions of two ClTCP genes, ClTCP14a and ClTCP15, in regulating plant height were confirmed by ectopic expression in Arabidopsis wild-type and ortholog mutants. CONCLUSIONS: This study represents the first genome-wide analysis of the watermelon TCP gene family, which provides valuable information for understanding the classification and functions of the TCP genes in watermelon. More... »

PAGES

85

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/s12870-016-0765-9

DOI

http://dx.doi.org/10.1186/s12870-016-0765-9

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1024318565

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27072931


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