JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gossypium", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Larva", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Spodoptera", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Lancaster Environment Centre, Lancaster University, Lancaster, UK", 
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wu", 
        "givenName": "Chao", 
        "id": "sg:person.010767363322.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010767363322.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhang", 
        "givenName": "Lei", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Liu", 
        "givenName": "Bo", 
        "id": "sg:person.0603712100.75", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0603712100.75"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gao", 
        "givenName": "Bojia", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Huang", 
        "givenName": "Cong", 
        "id": "sg:person.010104726413.75", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010104726413.75"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhang", 
        "givenName": "Ji", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jin", 
        "givenName": "Minghui", 
        "id": "sg:person.016476160113.84", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016476160113.84"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Hanyue", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Peng", 
        "givenName": "Yan", 
        "id": "sg:person.014157371626.73", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014157371626.73"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Lancaster Environment Centre, Lancaster University, Lancaster, UK", 
          "id": "http://www.grid.ac/institutes/grid.9835.7", 
          "name": [
            "Lancaster Environment Centre, Lancaster University, Lancaster, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rice", 
        "givenName": "Annabel", 
        "id": "sg:person.0666471226.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0666471226.10"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Entomology, Faculty of Agriculture Alexandria University, 22542, Alexandria, Egypt", 
          "id": "http://www.grid.ac/institutes/grid.7155.6", 
          "name": [
            "Department of Entomology, Faculty of Agriculture Alexandria University, 22542, Alexandria, Egypt"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hegazi", 
        "givenName": "Esmat", 
        "id": "sg:person.0777014125.13", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0777014125.13"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Lancaster Environment Centre, Lancaster University, Lancaster, UK", 
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wilson", 
        "givenName": "Kenneth", 
        "id": "sg:person.0716760634.19", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0716760634.19"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China", 
          "id": "http://www.grid.ac/institutes/grid.464493.8", 
          "name": [
            "Lancaster Environment Centre, Lancaster University, Lancaster, UK", 
            "Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Xu", 
        "givenName": "Pengjun", 
        "id": "sg:person.0612760625.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612760625.11"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China", 
          "id": "http://www.grid.ac/institutes/grid.488316.0", 
          "name": [
            "Lancaster Environment Centre, Lancaster University, Lancaster, UK", 
            "Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs; Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Xiao", 
        "givenName": "Yutao", 
        "id": "sg:person.0607006622.15", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0607006622.15"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1186/gb-2008-9-1-r7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029779393", 
          "https://doi.org/10.1186/gb-2008-9-1-r7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt.3122", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045760294", 
          "https://doi.org/10.1038/nbt.3122"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s12915-017-0402-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1090885729", 
          "https://doi.org/10.1186/s12915-017-0402-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nmeth.3317", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005140994", 
          "https://doi.org/10.1038/nmeth.3317"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/s41559-017-0314-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1091911848", 
          "https://doi.org/10.1038/s41559-017-0314-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nprot.2012.016", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030124536", 
          "https://doi.org/10.1038/nprot.2012.016"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/srep06556", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023160477", 
          "https://doi.org/10.1038/srep06556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-014-0550-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015222646", 
          "https://doi.org/10.1186/s13059-014-0550-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s12915-016-0343-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024313095", 
          "https://doi.org/10.1186/s12915-016-0343-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/35073063", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033819938", 
          "https://doi.org/10.1038/35073063"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2022-05-07", 
    "datePublishedReg": "2022-05-07", 
    "description": "BackgroundThe cotton leafworm, Spodoptera littoralis, is a highly polyphagous pest of many cultivated plants and crops in Africa and Europe. The genome of this pest will help us to further understand the molecular mechanisms of polyphagy.ResultsHerein, the high-quality genome of S. littoralis was obtained by Pacific Bioscience (PacBio) sequencing. The assembled genome size of S. littoralis is 436.55\u2009Mb with a scaffold N50 of 6.09\u2009Mb, consisting of 17,207 annotated protein-coding genes. Phylogenetic analysis shows that S. littoralis and its sibling species S. litura diverged about 5.44 million years ago. Expanded gene families were mainly involved in metabolic detoxification and tolerance to toxic xenobiotics based on GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis. Comparative genomics analysis showed that gene families involved in detoxification and chemosensation were significantly expanded in S. littoralis, representing genetic characteristics related to polyphagy and an extensive host range.ConclusionsWe assembled and annotated the reference genome of S. littoralis, and revealed that this pest has the genetic features of strong detoxification capacity, consistent with it being a significant risk to a wide range of host crops. These data resources will provide support for risk assessment and early warning monitoring of major polyphagous agricultural pests.", 
    "genre": "article", 
    "id": "sg:pub.10.1186/s12864-022-08582-w", 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.6621206", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.3865233", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1023790", 
        "issn": [
          "1471-2164"
        ], 
        "name": "BMC Genomics", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "23"
      }
    ], 
    "keywords": [
      "S. littoralis", 
      "gene family", 
      "polyphagous agricultural pest", 
      "protein-coding genes", 
      "assembled genome size", 
      "high-quality genomes", 
      "Spodoptera littoralis", 
      "comparative genomic analysis", 
      "Pacific Biosciences sequencing", 
      "KEGG pathway analysis", 
      "extensive host range", 
      "scaffold N50", 
      "cotton leafworm Spodoptera littoralis", 
      "genome size", 
      "reference genome", 
      "phylogenetic analysis", 
      "genomic analysis", 
      "agricultural pests", 
      "polyphagous pest", 
      "genomic features", 
      "host crops", 
      "host range", 
      "pathway analysis", 
      "molecular mechanisms", 
      "S. litura", 
      "genome", 
      "metabolic detoxification", 
      "pests", 
      "littoralis", 
      "cotton leafworm", 
      "toxic xenobiotics", 
      "polyphagy", 
      "detoxification capacity", 
      "genetic characteristics", 
      "crops", 
      "genetic features", 
      "detoxification", 
      "N50", 
      "family", 
      "chemosensation", 
      "MB", 
      "genes", 
      "litura", 
      "plants", 
      "sequencing", 
      "leafworm", 
      "tolerance", 
      "xenobiotics", 
      "data resources", 
      "risk assessment", 
      "ResultsHerein", 
      "Africa", 
      "wide range", 
      "mechanism", 
      "Europe", 
      "analysis", 
      "resources", 
      "significant risk", 
      "years", 
      "GO", 
      "range", 
      "capacity", 
      "features", 
      "size", 
      "assessment", 
      "ConclusionsWe", 
      "monitoring", 
      "characteristics", 
      "risk", 
      "support", 
      "early warning monitoring"
    ], 
    "name": "Genomic features of the polyphagous cotton leafworm Spodoptera littoralis", 
    "pagination": "353", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1147717587"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/s12864-022-08582-w"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "35525948"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/s12864-022-08582-w", 
      "https://app.dimensions.ai/details/publication/pub.1147717587"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-08-04T17:11", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_934.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1186/s12864-022-08582-w"
  }
]

Download the RDF metadata as:  json-ld nt turtle xml License info

This table displays all metadata directly associated to this object as RDF triples.

301 TRIPLES      21 PREDICATES      113 URIs      95 LITERALS      14 BLANK NODES