New insights into the genome of Rhodococcus ruber strain Chol-4 View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-05-02

AUTHORS

Govinda Guevara, Maria Castillo Lopez, Sergio Alonso, Julián Perera, Juana María Navarro-Llorens

ABSTRACT

BackgroundRhodococcus ruber strain Chol-4, a strain isolated from a sewage sludge sample, is able to grow in minimal medium supplemented with several compounds, showing a broad catabolic capacity. We have previously determined its genome sequence but a more comprehensive study of their metabolic capacities was necessary to fully unravel its potential for biotechnological applications.ResultsIn this work, the genome of R. ruber strain Chol-4 has been re-sequenced, revised, annotated and compared to other bacterial genomes in order to investigate the metabolic capabilities of this microorganism. The analysis of the data suggests that R. ruber Chol-4 contains several putative metabolic clusters of biotechnological interest, particularly those involved on steroid and aromatic compounds catabolism.To demonstrate some of its putative metabolic abilities, R. ruber has been cultured in minimal media containing compounds belonging to several of the predicted metabolic pathways. Moreover, mutants were built to test the naphtalen and protocatechuate predicted catabolic gene clusters.ConclusionsThe genomic analysis and experimental data presented in this work confirm the metabolic potential of R. ruber strain Chol-4. This strain is an interesting model bacterium due to its biodegradation capabilities. The results obtained in this work will facilitate the application of this strain as a biotechnological tool. More... »

PAGES

332

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/s12864-019-5677-2

DOI

http://dx.doi.org/10.1186/s12864-019-5677-2

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1113874355

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/31046661


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