Comparative genomics of plant pathogenic Botrytis species with distinct host specificity View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2019-12

AUTHORS

Claudio A. Valero-Jiménez, Javier Veloso, Martijn Staats, Jan A. L. van Kan

ABSTRACT

BACKGROUND: Fungi of the genus Botrytis (presently containing ~ 35 species) are able to infect more than 1400 different plant species and cause losses in a wide range of crops of economic importance. The best studied species is B. cinerea, which has a broad host range and is one of the best studied necrotrophic plant pathogenic fungi. Most other Botrytis spp. have a narrow host range and have been studied in less detail. To characterize genomic variation among different representatives of Botrytis spp., we sequenced and annotated the draft genomes of nine Botrytis species: B. calthae, B. convoluta, B. elliptica, B. galanthina, B. hyacinthi, B. narcissicola, B. paeoniae, B. porri and B. tulipae. RESULTS: Bioinformatics and comparative genomics tools were applied to determine a core of 7668 shared protein families in all Botrytis species, which grouped them in two distinct phylogenetic clades. The secretome of all nine Botrytis spp. was similar in number (ranging from 716 to 784 predicted proteins). A detailed analysis of the molecular functions of the secretome revealed that shared activities were highly similar. Orthologs to effectors functionally studied in B. cinerea were also present in the other Botrytis species. A complex pattern of presence/absence of secondary metabolite biosynthetic key enzymes was observed. CONCLUSIONS: Comparative genomics of Botrytis show that overall, species share the main signatures and protein families in the secreted proteins, and of known effectors. Our study provides leads to study host range determinants in the genus Botrytis and provides a stepping stone to elucidate the roles of effector candidates in the infection process of these species. More... »

PAGES

203

Journal

TITLE

BMC Genomics

ISSUE

1

VOLUME

20

From Grant

  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/s12864-019-5580-x

    DOI

    http://dx.doi.org/10.1186/s12864-019-5580-x

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1112738981

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30866801


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