RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2015-12

AUTHORS

Aymeric Goyer, Launa Hamlin, James M. Crosslin, Alex Buchanan, Jeff H. Chang

ABSTRACT

BACKGROUND: Potato virus Y (PVY) is one of the most important plant viruses affecting potato production. The interactions between potato and PVY are complex and the outcome of the interactions depends on the potato genotype, the PVY strain, and the environmental conditions. A potato cultivar can induce resistance to a specific PVY strain, yet be susceptible to another. How a single potato cultivar responds to PVY in both compatible and incompatible interactions is not clear. RESULTS: In this study, we used RNA-sequencing (RNA-Seq) to investigate and compare the transcriptional changes in leaves of potato upon inoculation with PVY. We used two potato varieties: Premier Russet, which is resistant to the PVY strain O (PVY(O)) but susceptible to the strain NTN (PVY(NTN)), and Russet Burbank, which is susceptible to all PVY strains that have been tested. Leaves were inoculated with PVY(O) or PVY(NTN), and samples were collected 4 and 10 h post inoculation (hpi). A larger number of differentially expressed (DE) genes were found in the compatible reactions compared to the incompatible reaction. For all treatments, the majority of DE genes were down-regulated at 4 hpi and up-regulated at 10 hpi. Gene Ontology enrichment analysis showed enrichment of the biological process GO term "Photosynthesis, light harvesting" specifically in PVY(O)-inoculated Premier Russet leaves, while the GO term "nucleosome assembly" was largely overrepresented in PVY(NTN)-inoculated Premier Russet leaves and PVY(O)-inoculated Russet Burbank leaves but not in PVY(O)-inoculated Premier Russet leaves. Fewer genes were DE over 4-fold in the incompatible reaction compared to the compatible reactions. Amongst these, five genes were DE only in PVY(O)-inoculated Premier Russet leaves, and all five were down-regulated. These genes are predicted to encode for a putative ABC transporter, a MYC2 transcription factor, a VQ-motif containing protein, a non-specific lipid-transfer protein, and a xyloglucan endotransglucosylase-hydroxylase. CONCLUSIONS: Our results show that the incompatible and compatible reactions in Premier Russet shared more similarities, in particular during the initial response, than the compatible reactions in the two different hosts. Our results identify potential key processes and genes that determine the fate of the reaction, compatible or incompatible, between PVY and its host. More... »

PAGES

472

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/s12864-015-1666-2

DOI

http://dx.doi.org/10.1186/s12864-015-1666-2

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1035230347

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/26091899


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Down-Regulation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Viral", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genotype", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Diseases", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Leaves", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Viruses", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Potyvirus", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis, RNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Solanum tuberosum", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Transcription, Genetic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Up-Regulation", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Oregon State University", 
          "id": "https://www.grid.ac/institutes/grid.4391.f", 
          "name": [
            "Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA", 
            "Hermiston Agricultural Research and Extension Center, Hermiston, OR, USA", 
            "Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Goyer", 
        "givenName": "Aymeric", 
        "id": "sg:person.01323253605.60", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01323253605.60"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Agricultural Research Service", 
          "id": "https://www.grid.ac/institutes/grid.463419.d", 
          "name": [
            "USDA-ARS, Prosser, WA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hamlin", 
        "givenName": "Launa", 
        "id": "sg:person.012673655777.09", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012673655777.09"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Agricultural Research Service", 
          "id": "https://www.grid.ac/institutes/grid.463419.d", 
          "name": [
            "USDA-ARS, Prosser, WA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Crosslin", 
        "givenName": "James M.", 
        "id": "sg:person.01212360034.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01212360034.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Oregon State University", 
          "id": "https://www.grid.ac/institutes/grid.4391.f", 
          "name": [
            "Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Buchanan", 
        "givenName": "Alex", 
        "id": "sg:person.01061370712.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061370712.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Oregon State University", 
          "id": "https://www.grid.ac/institutes/grid.4391.f", 
          "name": [
            "Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA", 
            "Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chang", 
        "givenName": "Jeff H.", 
        "id": "sg:person.010637573117.44", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010637573117.44"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1371/journal.pone.0025279", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000636396"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.106.048017", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000900546"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature10158", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002525491", 
          "https://doi.org/10.1038/nature10158"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.112.196816", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004193808"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nprot.2008.73", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005355981", 
          "https://doi.org/10.1038/nprot.2008.73"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10142-013-0309-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005599018", 
          "https://doi.org/10.1007/s10142-013-0309-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti610", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006001436"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12230-014-9409-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008271160", 
          "https://doi.org/10.1007/s12230-014-9409-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s001220100749", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008373097", 
          "https://doi.org/10.1007/s001220100749"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s001220100749", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008373097", 
          "https://doi.org/10.1007/s001220100749"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1023904217641", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008587596", 
          "https://doi.org/10.1023/a:1023904217641"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0029009", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010649096"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00425-005-0189-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014216160", 
          "https://doi.org/10.1007/s00425-005-0189-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00425-005-0189-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014216160", 
          "https://doi.org/10.1007/s00425-005-0189-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-14-340", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015581177", 
          "https://doi.org/10.1186/1471-2164-14-340"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-14-91", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016675314", 
          "https://doi.org/10.1186/1471-2105-14-91"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.111.090571", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017104603"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev-phyto-082712-102332", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022225296"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.104.025833", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023535884"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/jxb/eri145", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023800656"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-13-75", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023887451", 
          "https://doi.org/10.1186/1471-2164-13-75"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0034775", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024270656"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1364-3703.2008.00530.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024855740"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12230-012-9287-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025620516", 
          "https://doi.org/10.1007/s12230-012-9287-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/jxb/ert447", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026286980"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12230-008-9013-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026675472", 
          "https://doi.org/10.1007/s12230-008-9013-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12230-008-9013-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026675472", 
          "https://doi.org/10.1007/s12230-008-9013-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2202/1544-6115.1637", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029060732"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nprot.2012.016", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030124536", 
          "https://doi.org/10.1038/nprot.2012.016"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0966-842x(00)88879-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030211446"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.110.114983", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031164330"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.110.114983", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031164330"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/nph.12817", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031630597"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-013-0159-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036660511", 
          "https://doi.org/10.1007/s11103-013-0159-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2013-14-9-r95", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036803445", 
          "https://doi.org/10.1186/gb-2013-14-9-r95"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/tpj.12307", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037179492"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1364-3703.2004.00242.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038086928"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-3-642-30967-0_3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040961044", 
          "https://doi.org/10.1007/978-3-642-30967-0_3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.phyto.050908.135202", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042136135"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11816-013-0300-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043148067", 
          "https://doi.org/10.1007/s11816-013-0300-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11816-013-0300-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043148067", 
          "https://doi.org/10.1007/s11816-013-0300-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/jxb/eri285", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043794405"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/jxb/eri285", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043794405"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00299-014-1633-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044571167", 
          "https://doi.org/10.1007/s00299-014-1633-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00299-014-1633-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044571167", 
          "https://doi.org/10.1007/s00299-014-1633-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.022319", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051076932"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/70781", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052422333", 
          "https://doi.org/10.1038/70781"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/70781", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052422333", 
          "https://doi.org/10.1038/70781"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-013-2886-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052909615", 
          "https://doi.org/10.1007/s11033-013-2886-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-013-2886-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052909615", 
          "https://doi.org/10.1007/s11033-013-2886-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1094/mpmi-09-12-0219-r", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060077905"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1094/mpmi-19-0789", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060078398"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1166453", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062459089"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2015-12", 
    "datePublishedReg": "2015-12-01", 
    "description": "BACKGROUND: Potato virus Y (PVY) is one of the most important plant viruses affecting potato production. The interactions between potato and PVY are complex and the outcome of the interactions depends on the potato genotype, the PVY strain, and the environmental conditions. A potato cultivar can induce resistance to a specific PVY strain, yet be susceptible to another. How a single potato cultivar responds to PVY in both compatible and incompatible interactions is not clear.\nRESULTS: In this study, we used RNA-sequencing (RNA-Seq) to investigate and compare the transcriptional changes in leaves of potato upon inoculation with PVY. We used two potato varieties: Premier Russet, which is resistant to the PVY strain O (PVY(O)) but susceptible to the strain NTN (PVY(NTN)), and Russet Burbank, which is susceptible to all PVY strains that have been tested. Leaves were inoculated with PVY(O) or PVY(NTN), and samples were collected 4 and 10 h post inoculation (hpi). A larger number of differentially expressed (DE) genes were found in the compatible reactions compared to the incompatible reaction. For all treatments, the majority of DE genes were down-regulated at 4 hpi and up-regulated at 10 hpi. Gene Ontology enrichment analysis showed enrichment of the biological process GO term \"Photosynthesis, light harvesting\" specifically in PVY(O)-inoculated Premier Russet leaves, while the GO term \"nucleosome assembly\" was largely overrepresented in PVY(NTN)-inoculated Premier Russet leaves and PVY(O)-inoculated Russet Burbank leaves but not in PVY(O)-inoculated Premier Russet leaves. Fewer genes were DE over 4-fold in the incompatible reaction compared to the compatible reactions. Amongst these, five genes were DE only in PVY(O)-inoculated Premier Russet leaves, and all five were down-regulated. These genes are predicted to encode for a putative ABC transporter, a MYC2 transcription factor, a VQ-motif containing protein, a non-specific lipid-transfer protein, and a xyloglucan endotransglucosylase-hydroxylase.\nCONCLUSIONS: Our results show that the incompatible and compatible reactions in Premier Russet shared more similarities, in particular during the initial response, than the compatible reactions in the two different hosts. Our results identify potential key processes and genes that determine the fate of the reaction, compatible or incompatible, between PVY and its host.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/s12864-015-1666-2", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2521983", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1023790", 
        "issn": [
          "1471-2164"
        ], 
        "name": "BMC Genomics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "16"
      }
    ], 
    "name": "RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection", 
    "pagination": "472", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "a7d24ca652ed74cbbf33084d85a42c6777c17ef239a248fa23f97a71ba9b4c04"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "26091899"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100965258"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/s12864-015-1666-2"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1035230347"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/s12864-015-1666-2", 
      "https://app.dimensions.ai/details/publication/pub.1035230347"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:04", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000347_0000000347/records_89826_00000001.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2Fs12864-015-1666-2"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12864-015-1666-2'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12864-015-1666-2'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12864-015-1666-2'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12864-015-1666-2'


 

This table displays all metadata directly associated to this object as RDF triples.

303 TRIPLES      21 PREDICATES      85 URIs      33 LITERALS      21 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/s12864-015-1666-2 schema:about N0d6c9ba8f44a475cb9114982b3e21ded
2 N2746e6ed38af4cb3951c7dae11f2b88e
3 N28aff42d7e4144da9f20cfe4839e9fb0
4 N376212b5aee643fc9e0b15c4eacebfc8
5 N41c701274de84bac955842a84e061032
6 N60d2f1098095432faba4887fea6271cb
7 N879c732ee6314d62b8ae04b593c18389
8 N948b040ad3864652a014f07f4ae87ba4
9 Ncfbdec8971794f4880947ccca824d0da
10 Nd99748864d38464f9e09dcd3b0eba166
11 Neac68538fe444dc582e7b2b54c9d90fa
12 Nff26ebba78064de8ba7162fbf53fd4d2
13 anzsrc-for:06
14 anzsrc-for:0604
15 schema:author N01014f00248d4d68a8ba407f04fb78cd
16 schema:citation sg:pub.10.1007/978-3-642-30967-0_3
17 sg:pub.10.1007/s001220100749
18 sg:pub.10.1007/s00299-014-1633-4
19 sg:pub.10.1007/s00425-005-0189-5
20 sg:pub.10.1007/s10142-013-0309-4
21 sg:pub.10.1007/s11033-013-2886-7
22 sg:pub.10.1007/s11103-013-0159-4
23 sg:pub.10.1007/s11816-013-0300-5
24 sg:pub.10.1007/s12230-008-9013-7
25 sg:pub.10.1007/s12230-012-9287-7
26 sg:pub.10.1007/s12230-014-9409-5
27 sg:pub.10.1023/a:1023904217641
28 sg:pub.10.1038/70781
29 sg:pub.10.1038/nature10158
30 sg:pub.10.1038/nprot.2008.73
31 sg:pub.10.1038/nprot.2012.016
32 sg:pub.10.1186/1471-2105-14-91
33 sg:pub.10.1186/1471-2164-13-75
34 sg:pub.10.1186/1471-2164-14-340
35 sg:pub.10.1186/gb-2013-14-9-r95
36 https://doi.org/10.1016/s0966-842x(00)88879-4
37 https://doi.org/10.1093/bioinformatics/bti610
38 https://doi.org/10.1093/jxb/eri145
39 https://doi.org/10.1093/jxb/eri285
40 https://doi.org/10.1093/jxb/ert447
41 https://doi.org/10.1094/mpmi-09-12-0219-r
42 https://doi.org/10.1094/mpmi-19-0789
43 https://doi.org/10.1104/pp.112.196816
44 https://doi.org/10.1105/tpc.022319
45 https://doi.org/10.1105/tpc.104.025833
46 https://doi.org/10.1105/tpc.106.048017
47 https://doi.org/10.1105/tpc.111.090571
48 https://doi.org/10.1111/j.1364-3703.2004.00242.x
49 https://doi.org/10.1111/j.1364-3703.2008.00530.x
50 https://doi.org/10.1111/nph.12817
51 https://doi.org/10.1111/tpj.12307
52 https://doi.org/10.1126/science.1166453
53 https://doi.org/10.1146/annurev-phyto-082712-102332
54 https://doi.org/10.1146/annurev.phyto.050908.135202
55 https://doi.org/10.1371/journal.pone.0025279
56 https://doi.org/10.1371/journal.pone.0029009
57 https://doi.org/10.1371/journal.pone.0034775
58 https://doi.org/10.1534/genetics.110.114983
59 https://doi.org/10.2202/1544-6115.1637
60 schema:datePublished 2015-12
61 schema:datePublishedReg 2015-12-01
62 schema:description BACKGROUND: Potato virus Y (PVY) is one of the most important plant viruses affecting potato production. The interactions between potato and PVY are complex and the outcome of the interactions depends on the potato genotype, the PVY strain, and the environmental conditions. A potato cultivar can induce resistance to a specific PVY strain, yet be susceptible to another. How a single potato cultivar responds to PVY in both compatible and incompatible interactions is not clear. RESULTS: In this study, we used RNA-sequencing (RNA-Seq) to investigate and compare the transcriptional changes in leaves of potato upon inoculation with PVY. We used two potato varieties: Premier Russet, which is resistant to the PVY strain O (PVY(O)) but susceptible to the strain NTN (PVY(NTN)), and Russet Burbank, which is susceptible to all PVY strains that have been tested. Leaves were inoculated with PVY(O) or PVY(NTN), and samples were collected 4 and 10 h post inoculation (hpi). A larger number of differentially expressed (DE) genes were found in the compatible reactions compared to the incompatible reaction. For all treatments, the majority of DE genes were down-regulated at 4 hpi and up-regulated at 10 hpi. Gene Ontology enrichment analysis showed enrichment of the biological process GO term "Photosynthesis, light harvesting" specifically in PVY(O)-inoculated Premier Russet leaves, while the GO term "nucleosome assembly" was largely overrepresented in PVY(NTN)-inoculated Premier Russet leaves and PVY(O)-inoculated Russet Burbank leaves but not in PVY(O)-inoculated Premier Russet leaves. Fewer genes were DE over 4-fold in the incompatible reaction compared to the compatible reactions. Amongst these, five genes were DE only in PVY(O)-inoculated Premier Russet leaves, and all five were down-regulated. These genes are predicted to encode for a putative ABC transporter, a MYC2 transcription factor, a VQ-motif containing protein, a non-specific lipid-transfer protein, and a xyloglucan endotransglucosylase-hydroxylase. CONCLUSIONS: Our results show that the incompatible and compatible reactions in Premier Russet shared more similarities, in particular during the initial response, than the compatible reactions in the two different hosts. Our results identify potential key processes and genes that determine the fate of the reaction, compatible or incompatible, between PVY and its host.
63 schema:genre research_article
64 schema:inLanguage en
65 schema:isAccessibleForFree true
66 schema:isPartOf Na8a04b1f837a46cda7494611eaf4f380
67 Nbb24aff5098046b4a57b82d82f9104fd
68 sg:journal.1023790
69 schema:name RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection
70 schema:pagination 472
71 schema:productId N0db0a73334174fdd8de64485348bdc5f
72 N1e176b55e3e54bfba0ca30dc446c8c67
73 N22b4aa33ec9b4ef6be8e3fa9ad03d1ad
74 N7ec53bcfa819423b891505b793aeffc5
75 Nfbefaa44192a493facaa2a452ab78905
76 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035230347
77 https://doi.org/10.1186/s12864-015-1666-2
78 schema:sdDatePublished 2019-04-11T10:04
79 schema:sdLicense https://scigraph.springernature.com/explorer/license/
80 schema:sdPublisher N65cf937449604ab49fc8faaf60114d4d
81 schema:url http://link.springer.com/10.1186%2Fs12864-015-1666-2
82 sgo:license sg:explorer/license/
83 sgo:sdDataset articles
84 rdf:type schema:ScholarlyArticle
85 N01014f00248d4d68a8ba407f04fb78cd rdf:first sg:person.01323253605.60
86 rdf:rest Nc3b05be431fc494888c1d5aa60111dfb
87 N0d6c9ba8f44a475cb9114982b3e21ded schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Potyvirus
89 rdf:type schema:DefinedTerm
90 N0db0a73334174fdd8de64485348bdc5f schema:name pubmed_id
91 schema:value 26091899
92 rdf:type schema:PropertyValue
93 N1e176b55e3e54bfba0ca30dc446c8c67 schema:name readcube_id
94 schema:value a7d24ca652ed74cbbf33084d85a42c6777c17ef239a248fa23f97a71ba9b4c04
95 rdf:type schema:PropertyValue
96 N22b4aa33ec9b4ef6be8e3fa9ad03d1ad schema:name dimensions_id
97 schema:value pub.1035230347
98 rdf:type schema:PropertyValue
99 N2746e6ed38af4cb3951c7dae11f2b88e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
100 schema:name Up-Regulation
101 rdf:type schema:DefinedTerm
102 N28aff42d7e4144da9f20cfe4839e9fb0 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
103 schema:name Down-Regulation
104 rdf:type schema:DefinedTerm
105 N376212b5aee643fc9e0b15c4eacebfc8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
106 schema:name Plant Diseases
107 rdf:type schema:DefinedTerm
108 N41c701274de84bac955842a84e061032 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
109 schema:name Plant Viruses
110 rdf:type schema:DefinedTerm
111 N4e878512b63d4bd4a15e831c0d468f17 rdf:first sg:person.01212360034.02
112 rdf:rest N5483fe265249436f85d35ba90a4946c4
113 N5483fe265249436f85d35ba90a4946c4 rdf:first sg:person.01061370712.20
114 rdf:rest Naa7f5abe2a9c446898586805e0ddb09b
115 N60d2f1098095432faba4887fea6271cb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
116 schema:name Genome, Viral
117 rdf:type schema:DefinedTerm
118 N65cf937449604ab49fc8faaf60114d4d schema:name Springer Nature - SN SciGraph project
119 rdf:type schema:Organization
120 N7ec53bcfa819423b891505b793aeffc5 schema:name nlm_unique_id
121 schema:value 100965258
122 rdf:type schema:PropertyValue
123 N879c732ee6314d62b8ae04b593c18389 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Solanum tuberosum
125 rdf:type schema:DefinedTerm
126 N948b040ad3864652a014f07f4ae87ba4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
127 schema:name Plant Leaves
128 rdf:type schema:DefinedTerm
129 Na8a04b1f837a46cda7494611eaf4f380 schema:issueNumber 1
130 rdf:type schema:PublicationIssue
131 Naa7f5abe2a9c446898586805e0ddb09b rdf:first sg:person.010637573117.44
132 rdf:rest rdf:nil
133 Nbb24aff5098046b4a57b82d82f9104fd schema:volumeNumber 16
134 rdf:type schema:PublicationVolume
135 Nc3b05be431fc494888c1d5aa60111dfb rdf:first sg:person.012673655777.09
136 rdf:rest N4e878512b63d4bd4a15e831c0d468f17
137 Ncfbdec8971794f4880947ccca824d0da schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
138 schema:name RNA
139 rdf:type schema:DefinedTerm
140 Nd99748864d38464f9e09dcd3b0eba166 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
141 schema:name Transcription, Genetic
142 rdf:type schema:DefinedTerm
143 Neac68538fe444dc582e7b2b54c9d90fa schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
144 schema:name Sequence Analysis, RNA
145 rdf:type schema:DefinedTerm
146 Nfbefaa44192a493facaa2a452ab78905 schema:name doi
147 schema:value 10.1186/s12864-015-1666-2
148 rdf:type schema:PropertyValue
149 Nff26ebba78064de8ba7162fbf53fd4d2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
150 schema:name Genotype
151 rdf:type schema:DefinedTerm
152 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
153 schema:name Biological Sciences
154 rdf:type schema:DefinedTerm
155 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
156 schema:name Genetics
157 rdf:type schema:DefinedTerm
158 sg:grant.2521983 http://pending.schema.org/fundedItem sg:pub.10.1186/s12864-015-1666-2
159 rdf:type schema:MonetaryGrant
160 sg:journal.1023790 schema:issn 1471-2164
161 schema:name BMC Genomics
162 rdf:type schema:Periodical
163 sg:person.01061370712.20 schema:affiliation https://www.grid.ac/institutes/grid.4391.f
164 schema:familyName Buchanan
165 schema:givenName Alex
166 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061370712.20
167 rdf:type schema:Person
168 sg:person.010637573117.44 schema:affiliation https://www.grid.ac/institutes/grid.4391.f
169 schema:familyName Chang
170 schema:givenName Jeff H.
171 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010637573117.44
172 rdf:type schema:Person
173 sg:person.01212360034.02 schema:affiliation https://www.grid.ac/institutes/grid.463419.d
174 schema:familyName Crosslin
175 schema:givenName James M.
176 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01212360034.02
177 rdf:type schema:Person
178 sg:person.012673655777.09 schema:affiliation https://www.grid.ac/institutes/grid.463419.d
179 schema:familyName Hamlin
180 schema:givenName Launa
181 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012673655777.09
182 rdf:type schema:Person
183 sg:person.01323253605.60 schema:affiliation https://www.grid.ac/institutes/grid.4391.f
184 schema:familyName Goyer
185 schema:givenName Aymeric
186 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01323253605.60
187 rdf:type schema:Person
188 sg:pub.10.1007/978-3-642-30967-0_3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040961044
189 https://doi.org/10.1007/978-3-642-30967-0_3
190 rdf:type schema:CreativeWork
191 sg:pub.10.1007/s001220100749 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008373097
192 https://doi.org/10.1007/s001220100749
193 rdf:type schema:CreativeWork
194 sg:pub.10.1007/s00299-014-1633-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044571167
195 https://doi.org/10.1007/s00299-014-1633-4
196 rdf:type schema:CreativeWork
197 sg:pub.10.1007/s00425-005-0189-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014216160
198 https://doi.org/10.1007/s00425-005-0189-5
199 rdf:type schema:CreativeWork
200 sg:pub.10.1007/s10142-013-0309-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005599018
201 https://doi.org/10.1007/s10142-013-0309-4
202 rdf:type schema:CreativeWork
203 sg:pub.10.1007/s11033-013-2886-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052909615
204 https://doi.org/10.1007/s11033-013-2886-7
205 rdf:type schema:CreativeWork
206 sg:pub.10.1007/s11103-013-0159-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036660511
207 https://doi.org/10.1007/s11103-013-0159-4
208 rdf:type schema:CreativeWork
209 sg:pub.10.1007/s11816-013-0300-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043148067
210 https://doi.org/10.1007/s11816-013-0300-5
211 rdf:type schema:CreativeWork
212 sg:pub.10.1007/s12230-008-9013-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026675472
213 https://doi.org/10.1007/s12230-008-9013-7
214 rdf:type schema:CreativeWork
215 sg:pub.10.1007/s12230-012-9287-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025620516
216 https://doi.org/10.1007/s12230-012-9287-7
217 rdf:type schema:CreativeWork
218 sg:pub.10.1007/s12230-014-9409-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008271160
219 https://doi.org/10.1007/s12230-014-9409-5
220 rdf:type schema:CreativeWork
221 sg:pub.10.1023/a:1023904217641 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008587596
222 https://doi.org/10.1023/a:1023904217641
223 rdf:type schema:CreativeWork
224 sg:pub.10.1038/70781 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052422333
225 https://doi.org/10.1038/70781
226 rdf:type schema:CreativeWork
227 sg:pub.10.1038/nature10158 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002525491
228 https://doi.org/10.1038/nature10158
229 rdf:type schema:CreativeWork
230 sg:pub.10.1038/nprot.2008.73 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005355981
231 https://doi.org/10.1038/nprot.2008.73
232 rdf:type schema:CreativeWork
233 sg:pub.10.1038/nprot.2012.016 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030124536
234 https://doi.org/10.1038/nprot.2012.016
235 rdf:type schema:CreativeWork
236 sg:pub.10.1186/1471-2105-14-91 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016675314
237 https://doi.org/10.1186/1471-2105-14-91
238 rdf:type schema:CreativeWork
239 sg:pub.10.1186/1471-2164-13-75 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023887451
240 https://doi.org/10.1186/1471-2164-13-75
241 rdf:type schema:CreativeWork
242 sg:pub.10.1186/1471-2164-14-340 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015581177
243 https://doi.org/10.1186/1471-2164-14-340
244 rdf:type schema:CreativeWork
245 sg:pub.10.1186/gb-2013-14-9-r95 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036803445
246 https://doi.org/10.1186/gb-2013-14-9-r95
247 rdf:type schema:CreativeWork
248 https://doi.org/10.1016/s0966-842x(00)88879-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030211446
249 rdf:type schema:CreativeWork
250 https://doi.org/10.1093/bioinformatics/bti610 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006001436
251 rdf:type schema:CreativeWork
252 https://doi.org/10.1093/jxb/eri145 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023800656
253 rdf:type schema:CreativeWork
254 https://doi.org/10.1093/jxb/eri285 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043794405
255 rdf:type schema:CreativeWork
256 https://doi.org/10.1093/jxb/ert447 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026286980
257 rdf:type schema:CreativeWork
258 https://doi.org/10.1094/mpmi-09-12-0219-r schema:sameAs https://app.dimensions.ai/details/publication/pub.1060077905
259 rdf:type schema:CreativeWork
260 https://doi.org/10.1094/mpmi-19-0789 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060078398
261 rdf:type schema:CreativeWork
262 https://doi.org/10.1104/pp.112.196816 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004193808
263 rdf:type schema:CreativeWork
264 https://doi.org/10.1105/tpc.022319 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051076932
265 rdf:type schema:CreativeWork
266 https://doi.org/10.1105/tpc.104.025833 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023535884
267 rdf:type schema:CreativeWork
268 https://doi.org/10.1105/tpc.106.048017 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000900546
269 rdf:type schema:CreativeWork
270 https://doi.org/10.1105/tpc.111.090571 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017104603
271 rdf:type schema:CreativeWork
272 https://doi.org/10.1111/j.1364-3703.2004.00242.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1038086928
273 rdf:type schema:CreativeWork
274 https://doi.org/10.1111/j.1364-3703.2008.00530.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1024855740
275 rdf:type schema:CreativeWork
276 https://doi.org/10.1111/nph.12817 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031630597
277 rdf:type schema:CreativeWork
278 https://doi.org/10.1111/tpj.12307 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037179492
279 rdf:type schema:CreativeWork
280 https://doi.org/10.1126/science.1166453 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062459089
281 rdf:type schema:CreativeWork
282 https://doi.org/10.1146/annurev-phyto-082712-102332 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022225296
283 rdf:type schema:CreativeWork
284 https://doi.org/10.1146/annurev.phyto.050908.135202 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042136135
285 rdf:type schema:CreativeWork
286 https://doi.org/10.1371/journal.pone.0025279 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000636396
287 rdf:type schema:CreativeWork
288 https://doi.org/10.1371/journal.pone.0029009 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010649096
289 rdf:type schema:CreativeWork
290 https://doi.org/10.1371/journal.pone.0034775 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024270656
291 rdf:type schema:CreativeWork
292 https://doi.org/10.1534/genetics.110.114983 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031164330
293 rdf:type schema:CreativeWork
294 https://doi.org/10.2202/1544-6115.1637 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029060732
295 rdf:type schema:CreativeWork
296 https://www.grid.ac/institutes/grid.4391.f schema:alternateName Oregon State University
297 schema:name Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA
298 Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA
299 Hermiston Agricultural Research and Extension Center, Hermiston, OR, USA
300 rdf:type schema:Organization
301 https://www.grid.ac/institutes/grid.463419.d schema:alternateName Agricultural Research Service
302 schema:name USDA-ARS, Prosser, WA, USA
303 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...