Ontology type: schema:ScholarlyArticle Open Access: True
2019-01-09
AUTHORSPengjun Xu, Bin Lu, Jinyan Liu, Jiangtao Chao, Philip Donkersley, Robert Holdbrook, Yanhui Lu
ABSTRACTBackgroudHorizontal gene transfer and gene duplication are two major mechanisms contributing to the evolutionary adaptation of organisms. Previously, polygalacturonase genes (PGs) were independently horizontally transferred and underwent multiple duplications in insects (e.g., mirid bugs and beetles). Here, we chose three phytozoophagous mirid bugs (Adelphocoris suturalis, A. fasciaticollis, A. lineolatus) and one zoophytophagous mirid bug (Nesidiocoris tenuis) to detect whether the duplication, molecular evolution, and expression levels of PGs were related to host range expansion in mirid bugs.ResultsBy RNA-seq, we reported 30, 20, 19 and 8 PGs in A. suturalis, A. fasciaticollis, A. lineolatus and N. tenuis, respectively. Interestingly, the number of PGs was significantly positive correlation to the number of host plants (P = 0.0339) in mirid bugs. Most PGs (> 17) were highly expressed in the three phytozoophagous mirid bugs, while only one PG was relatively highly expressed in the zoophytophagous mirid bug. Natural selection analysis clearly showed that a significant relaxation of selection pressure acted on the PGs in zoophytophagous mirid bugs (K = 0.546, P = 0.0158) rather than in phytozoophagous mirid bugs (K = 1, P = 0.92), suggesting a function constraint of PGs in phytozoophagous mirid bugs.ConclusionTaken together with gene duplication, molecular evolution, and expression levels, our results suggest that PGs are more strictly required by phytozoophagous than by zoophytophagous mirid bugs and that the duplication of PGs is associated with the expansion of host plant ranges in mirid bugs. More... »
PAGES12
http://scigraph.springernature.com/pub.10.1186/s12862-019-1351-1
DOIhttp://dx.doi.org/10.1186/s12862-019-1351-1
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1111313505
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/30626314
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Evolution, Molecular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Duplication",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Profiling",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Expression Regulation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Transfer, Horizontal",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genes, Insect",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Heteroptera",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Host Specificity",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polygalacturonase",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Selection, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Alignment",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Species Specificity",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK",
"id": "http://www.grid.ac/institutes/grid.9835.7",
"name": [
"Tobacco Research Institute, Chinese Academy of Agricultural Sciences, 266101, Qingdao, People\u2019s Republic of China",
"Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK"
],
"type": "Organization"
},
"familyName": "Xu",
"givenName": "Pengjun",
"id": "sg:person.0612760625.11",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612760625.11"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Herpetology, Chengdu Institute of Biology, Chinese Academy of Sciences, 610041, Chengdu, Sichuan, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.458441.8",
"name": [
"Department of Herpetology, Chengdu Institute of Biology, Chinese Academy of Sciences, 610041, Chengdu, Sichuan, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Lu",
"givenName": "Bin",
"id": "sg:person.01232451524.77",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232451524.77"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Tobacco Research Institute, Chinese Academy of Agricultural Sciences, 266101, Qingdao, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.464493.8",
"name": [
"Tobacco Research Institute, Chinese Academy of Agricultural Sciences, 266101, Qingdao, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Liu",
"givenName": "Jinyan",
"id": "sg:person.016041336147.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016041336147.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Tobacco Research Institute, Chinese Academy of Agricultural Sciences, 266101, Qingdao, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.464493.8",
"name": [
"Tobacco Research Institute, Chinese Academy of Agricultural Sciences, 266101, Qingdao, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Chao",
"givenName": "Jiangtao",
"id": "sg:person.015022137625.02",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015022137625.02"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK",
"id": "http://www.grid.ac/institutes/grid.9835.7",
"name": [
"Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK"
],
"type": "Organization"
},
"familyName": "Donkersley",
"givenName": "Philip",
"id": "sg:person.01241750500.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01241750500.35"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK",
"id": "http://www.grid.ac/institutes/grid.9835.7",
"name": [
"Lancaster Environment Centre, Lancaster University, LA1 4YQ, Lancaster, UK"
],
"type": "Organization"
},
"familyName": "Holdbrook",
"givenName": "Robert",
"id": "sg:person.010133645347.59",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010133645347.59"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 100193, Beijing, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.464356.6",
"name": [
"State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, 100193, Beijing, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Lu",
"givenName": "Yanhui",
"id": "sg:person.01126433245.35",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01126433245.35"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s00359-003-0478-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031449537",
"https://doi.org/10.1007/s00359-003-0478-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ismej.2016.93",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027694582",
"https://doi.org/10.1038/ismej.2016.93"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-12-323",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021902674",
"https://doi.org/10.1186/1471-2105-12-323"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg3962",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007956667",
"https://doi.org/10.1038/nrg3962"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.1883",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015803168",
"https://doi.org/10.1038/nbt.1883"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13059-016-1145-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083720069",
"https://doi.org/10.1186/s13059-016-1145-3"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12041-013-0212-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001446932",
"https://doi.org/10.1007/s12041-013-0212-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00018-009-0180-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025064165",
"https://doi.org/10.1007/s00018-009-0180-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.1621",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031035095",
"https://doi.org/10.1038/nbt.1621"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2386",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002840749",
"https://doi.org/10.1038/nrg2386"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2009-10-3-r25",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049583368",
"https://doi.org/10.1186/gb-2009-10-3-r25"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-016-3195-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051995045",
"https://doi.org/10.1007/s00705-016-3195-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13100-016-0074-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040434976",
"https://doi.org/10.1186/s13100-016-0074-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2002-3-2-research0008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027965540",
"https://doi.org/10.1186/gb-2002-3-2-research0008"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2689",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045071161",
"https://doi.org/10.1038/nrg2689"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-01-09",
"datePublishedReg": "2019-01-09",
"description": "BackgroudHorizontal gene transfer and gene duplication are two major mechanisms contributing to the evolutionary adaptation of organisms. Previously, polygalacturonase genes (PGs) were independently horizontally transferred and underwent multiple duplications in insects (e.g., mirid bugs and beetles). Here, we chose three phytozoophagous mirid bugs (Adelphocoris suturalis, A. fasciaticollis, A. lineolatus) and one zoophytophagous mirid bug (Nesidiocoris tenuis) to detect whether the duplication, molecular evolution, and expression levels of PGs were related to host range expansion in mirid bugs.ResultsBy RNA-seq, we reported 30, 20, 19 and 8 PGs in A. suturalis, A. fasciaticollis, A. lineolatus and N. tenuis, respectively. Interestingly, the number of PGs was significantly positive correlation to the number of host plants (P\u00a0=\u20090.0339) in mirid bugs. Most PGs (>\u200917) were highly expressed in the three phytozoophagous mirid bugs, while only one PG was relatively highly expressed in the zoophytophagous mirid bug. Natural selection analysis clearly showed that a significant relaxation of selection pressure acted on the PGs in zoophytophagous mirid bugs (K\u2009=\u20090.546, P\u00a0=\u20090.0158) rather than in phytozoophagous mirid bugs (K\u2009=\u20091, P\u00a0=\u20090.92), suggesting a function constraint of PGs in phytozoophagous mirid bugs.ConclusionTaken together with gene duplication, molecular evolution, and expression levels, our results suggest that PGs are more strictly required by phytozoophagous than by zoophytophagous mirid bugs and that the duplication of PGs is associated with the expansion of host plant ranges in mirid bugs.",
"genre": "article",
"id": "sg:pub.10.1186/s12862-019-1351-1",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.8194423",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.8182118",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.7022530",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1024249",
"issn": [
"2730-7182"
],
"name": "BMC Ecology and Evolution",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "19"
}
],
"keywords": [
"host range expansion",
"polygalacturonase gene",
"mirid bugs",
"gene duplication",
"molecular evolution",
"range expansion",
"host plant range",
"expression levels",
"natural selection analysis",
"A. suturalis",
"host plants",
"plant range",
"A. fasciaticollis",
"N. tenuis",
"evolutionary adaptation",
"multiple duplications",
"RNA-seq",
"A. lineolatus",
"selection pressure",
"selection analysis",
"gene transfer",
"duplication",
"genes",
"major mechanism",
"bugs",
"insects",
"suturalis",
"lineolatus",
"organisms",
"tenuis",
"plants",
"evolution",
"expression",
"adaptation",
"ConclusionTaken",
"expansion",
"mechanism",
"positive correlation",
"levels",
"number",
"analysis",
"transfer",
"range",
"results",
"correlation",
"constraints",
"function constraints",
"pressure",
"significant relaxation",
"relaxation"
],
"name": "Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs",
"pagination": "12",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1111313505"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/s12862-019-1351-1"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"30626314"
]
}
],
"sameAs": [
"https://doi.org/10.1186/s12862-019-1351-1",
"https://app.dimensions.ai/details/publication/pub.1111313505"
],
"sdDataset": "articles",
"sdDatePublished": "2022-10-01T06:46",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20221001/entities/gbq_results/article/article_825.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1186/s12862-019-1351-1"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12862-019-1351-1'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12862-019-1351-1'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12862-019-1351-1'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12862-019-1351-1'
This table displays all metadata directly associated to this object as RDF triples.
284 TRIPLES
21 PREDICATES
104 URIs
81 LITERALS
21 BLANK NODES