Ontology type: schema:ScholarlyArticle Open Access: True
2017-05-25
AUTHORSMathieu Fourment, Aaron E. Darling, Edward C. Holmes
ABSTRACTBackgroundWild birds are the major reservoir hosts for influenza A viruses (AIVs) and have been implicated in the emergence of pandemic events in livestock and human populations. Understanding how AIVs spread within and across continents is therefore critical to the development of successful strategies to manage and reduce the impact of influenza outbreaks. In North America many bird species undergo seasonal migratory movements along a North-South axis, thereby providing opportunities for viruses to spread over long distances. However, the role played by such avian flyways in shaping the genetic structure of AIV populations remains uncertain.ResultsTo assess the relative contribution of bird migration along flyways to the genetic structure of AIV we performed a large-scale phylogeographic study of viruses sampled in the USA and Canada, involving the analysis of 3805 to 4505 sequences from 36 to 38 geographic localities depending on the gene segment data set. To assist in this we developed a maximum likelihood-based genetic algorithm to explore a wide range of complex spatial models, depicting a more complete picture of the migration network than determined previously.ConclusionsBased on phylogenies estimated from nucleotide sequence data sets, our results show that AIV migration rates are significantly higher within than between flyways, indicating that the migratory patterns of birds play a key role in viral dispersal. These findings provide valuable insights into the evolution, maintenance and transmission of AIVs, in turn allowing the development of improved programs for surveillance and risk assessment. More... »
PAGES118
http://scigraph.springernature.com/pub.10.1186/s12862-017-0965-4
DOIhttp://dx.doi.org/10.1186/s12862-017-0965-4
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1085596004
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/28545432
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0602",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Ecology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animal Migration",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals, Wild",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Birds",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Canada",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Disease Outbreaks",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Influenza A virus",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Influenza in Birds",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Likelihood Functions",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeography",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "United States",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia",
"id": "http://www.grid.ac/institutes/grid.1013.3",
"name": [
"ithree institute, University of Technology Sydney, Sydney, Australia",
"Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia"
],
"type": "Organization"
},
"familyName": "Fourment",
"givenName": "Mathieu",
"id": "sg:person.01257106550.52",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01257106550.52"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "ithree institute, University of Technology Sydney, Sydney, Australia",
"id": "http://www.grid.ac/institutes/grid.117476.2",
"name": [
"ithree institute, University of Technology Sydney, Sydney, Australia"
],
"type": "Organization"
},
"familyName": "Darling",
"givenName": "Aaron E.",
"id": "sg:person.01146663200.05",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01146663200.05"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia",
"id": "http://www.grid.ac/institutes/grid.1013.3",
"name": [
"Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, Australia"
],
"type": "Organization"
},
"familyName": "Holmes",
"givenName": "Edward C.",
"id": "sg:person.012501436222.04",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012501436222.04"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1186/s12862-014-0163-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036682692",
"https://doi.org/10.1186/s12862-014-0163-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s13104-016-1927-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043933960",
"https://doi.org/10.1186/s13104-016-1927-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2148-6-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019810976",
"https://doi.org/10.1186/1471-2148-6-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01734359",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044065382",
"https://doi.org/10.1007/bf01734359"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/82_2014_396",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048259292",
"https://doi.org/10.1007/82_2014_396"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/s12862-015-0410-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021210959",
"https://doi.org/10.1186/s12862-015-0410-5"
],
"type": "CreativeWork"
}
],
"datePublished": "2017-05-25",
"datePublishedReg": "2017-05-25",
"description": "BackgroundWild birds are the major reservoir hosts for influenza A viruses (AIVs) and have been implicated in the emergence of pandemic events in livestock and human populations. Understanding how AIVs spread within and across continents is therefore critical to the development of successful strategies to manage and reduce the impact of influenza outbreaks. In North America many bird species undergo seasonal migratory movements along a North-South axis, thereby providing opportunities for viruses to spread over long distances. However, the role played by such avian flyways in shaping the genetic structure of AIV populations remains uncertain.ResultsTo assess the relative contribution of bird migration along flyways to the genetic structure of AIV we performed a large-scale phylogeographic study of viruses sampled in the USA and Canada, involving the analysis of 3805 to 4505 sequences from 36 to 38 geographic localities depending on the gene segment data set. To assist in this we developed a maximum likelihood-based genetic algorithm to explore a wide range of complex spatial models, depicting a more complete picture of the migration network than determined previously.ConclusionsBased on phylogenies estimated from nucleotide sequence data sets, our results show that AIV migration rates are significantly higher within than between flyways, indicating that the migratory patterns of birds play a key role in viral dispersal. These findings provide valuable insights into the evolution, maintenance and transmission of AIVs, in turn allowing the development of improved programs for surveillance and risk assessment.",
"genre": "article",
"id": "sg:pub.10.1186/s12862-017-0965-4",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.6732375",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.5128927",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1024249",
"issn": [
"2730-7182"
],
"name": "BMC Ecology and Evolution",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "17"
}
],
"keywords": [
"genetic structure",
"large-scale phylogeographic study",
"nucleotide sequence data sets",
"seasonal migratory movements",
"sequence data sets",
"phylogeographic studies",
"bird species",
"migratory flyways",
"North America",
"bird migration",
"transmission of AIVs",
"flyway",
"geographic localities",
"migratory patterns",
"viral dispersal",
"complex spatial models",
"avian influenza viruses",
"migratory movements",
"human population",
"reservoir hosts",
"major reservoir host",
"birds",
"migration rate",
"risk assessment",
"key role",
"spatial model",
"phylogeny",
"dispersal",
"AIV",
"virus",
"relative contribution",
"species",
"influenza virus",
"valuable insights",
"America",
"complete picture",
"host",
"role",
"long distances",
"sequence",
"population",
"successful strategy",
"livestock",
"localities",
"impact",
"North-South",
"wide range",
"maintenance",
"migration",
"evolution",
"USA",
"insights",
"development",
"migration networks",
"data sets",
"ResultsTo",
"continent",
"pandemic events",
"structure",
"patterns",
"Canada",
"emergence",
"assessment",
"events",
"spread",
"turn",
"analysis",
"outbreak",
"distance",
"influenza",
"range",
"strategies",
"findings",
"opportunities",
"contribution",
"segment data",
"movement",
"study",
"transmission",
"influenza outbreaks",
"data",
"set",
"results",
"program",
"rate",
"network",
"model",
"picture",
"surveillance",
"genetic algorithm",
"algorithm"
],
"name": "The impact of migratory flyways on the spread of avian influenza virus in North America",
"pagination": "118",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1085596004"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/s12862-017-0965-4"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"28545432"
]
}
],
"sameAs": [
"https://doi.org/10.1186/s12862-017-0965-4",
"https://app.dimensions.ai/details/publication/pub.1085596004"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T17:05",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_748.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1186/s12862-017-0965-4"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12862-017-0965-4'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12862-017-0965-4'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12862-017-0965-4'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12862-017-0965-4'
This table displays all metadata directly associated to this object as RDF triples.
253 TRIPLES
21 PREDICATES
136 URIs
121 LITERALS
20 BLANK NODES