Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2017-12

AUTHORS

William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer

ABSTRACT

BACKGROUND: Genomic interaction studies use next-generation sequencing (NGS) to examine the interactions between two loci on the genome, with subsequent bioinformatics analyses typically including annotation, intersection, and merging of data from multiple experiments. While many file types and analysis tools exist for storing and manipulating single locus NGS data, there is currently no file standard or analysis tool suite for manipulating and storing paired-genomic-loci: the data type resulting from "genomic interaction" studies. As genomic interaction sequencing data are becoming prevalent, a standard file format and tools for working with these data conveniently and efficiently are needed. RESULTS: This article details a file standard and novel software tool suite for working with paired-genomic-loci data. We present the paired-genomic-loci (PGL) file standard for genomic-interactions data, and the accompanying analysis tool suite "pgltools": a cross platform, pypy compatible python package available both as an easy-to-use UNIX package, and as a python module, for integration into pipelines of paired-genomic-loci analyses. CONCLUSIONS: Pgltools is a freely available, open source tool suite for manipulating paired-genomic-loci data. Source code, an in-depth manual, and a tutorial are available publicly at www.github.com/billgreenwald/pgltools , and a python module of the operations can be installed from PyPI via the PyGLtools module. More... »

PAGES

207

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/s12859-017-1621-0

DOI

http://dx.doi.org/10.1186/s12859-017-1621-0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1084612327

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/28388874


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromatin", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromatin Immunoprecipitation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Loci", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "High-Throughput Nucleotide Sequencing", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Software", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Bioinformatics and Systems Biology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Greenwald", 
        "givenName": "William W.", 
        "id": "sg:person.016310134163.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016310134163.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Institute for Genomic Medicine, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
            "Department of Pediatrics and Rady Children\u2019s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "He", 
        "id": "sg:person.011202553123.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011202553123.11"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Pediatrics and Rady Children\u2019s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Smith", 
        "givenName": "Erin N.", 
        "id": "sg:person.01141732751.86", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141732751.86"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Department of Pediatrics and Rady Children\u2019s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Benaglio", 
        "givenName": "Paola", 
        "id": "sg:person.01251302407.13", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251302407.13"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Institute for Genomic Medicine, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
            "Department of Pediatrics and Rady Children\u2019s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nariai", 
        "givenName": "Naoki", 
        "id": "sg:person.01366516712.58", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366516712.58"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, San Diego", 
          "id": "https://www.grid.ac/institutes/grid.266100.3", 
          "name": [
            "Institute for Genomic Medicine, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA", 
            "Department of Pediatrics and Rady Children\u2019s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Frazer", 
        "givenName": "Kelly A.", 
        "id": "sg:person.0774756245.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0774756245.11"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1186/s12864-015-2140-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006592396", 
          "https://doi.org/10.1186/s12864-015-2140-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1181369", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007401642"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1181369", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007401642"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.160374.113", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022670502"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.229102", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022792016"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.cels.2016.07.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024198101"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2010-11-2-r22", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026629820", 
          "https://doi.org/10.1186/gb-2010-11-2-r22"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-015-0806-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036370983", 
          "https://doi.org/10.1186/s13059-015-0806-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-015-0806-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036370983", 
          "https://doi.org/10.1186/s13059-015-0806-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/s13059-015-0831-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036760229", 
          "https://doi.org/10.1186/s13059-015-0831-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btq033", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036892131"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.cels.2015.07.012", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037240966"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature14222", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046074449", 
          "https://doi.org/10.1038/nature14222"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.cell.2014.11.021", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047951603"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2017-12", 
    "datePublishedReg": "2017-12-01", 
    "description": "BACKGROUND: Genomic interaction studies use next-generation sequencing (NGS) to examine the interactions between two loci on the genome, with subsequent bioinformatics analyses typically including annotation, intersection, and merging of data from multiple experiments. While many file types and analysis tools exist for storing and manipulating single locus NGS data, there is currently no file standard or analysis tool suite for manipulating and storing paired-genomic-loci: the data type resulting from \"genomic interaction\" studies. As genomic interaction sequencing data are becoming prevalent, a standard file format and tools for working with these data conveniently and efficiently are needed.\nRESULTS: This article details a file standard and novel software tool suite for working with paired-genomic-loci data. We present the paired-genomic-loci (PGL) file standard for genomic-interactions data, and the accompanying analysis tool suite \"pgltools\": a cross platform, pypy compatible python package available both as an easy-to-use UNIX package, and as a python module, for integration into pipelines of paired-genomic-loci analyses.\nCONCLUSIONS: Pgltools is a freely available, open source tool suite for manipulating paired-genomic-loci data. Source code, an in-depth manual, and a tutorial are available publicly at www.github.com/billgreenwald/pgltools , and a python module of the operations can be installed from PyPI via the PyGLtools module.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/s12859-017-1621-0", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2692046", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.4055776", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.3933407", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.6442718", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.6848953", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2507960", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1023786", 
        "issn": [
          "1471-2105"
        ], 
        "name": "BMC Bioinformatics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "18"
      }
    ], 
    "name": "Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data", 
    "pagination": "207", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "a1d444abcc33a33ecfeab3a971b792963756c60032c2244a8002316fd449551e"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "28388874"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100965194"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/s12859-017-1621-0"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1084612327"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/s12859-017-1621-0", 
      "https://app.dimensions.ai/details/publication/pub.1084612327"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:19", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000348_0000000348/records_54325_00000001.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1186%2Fs12859-017-1621-0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12859-017-1621-0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12859-017-1621-0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12859-017-1621-0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12859-017-1621-0'


 

This table displays all metadata directly associated to this object as RDF triples.

182 TRIPLES      21 PREDICATES      47 URIs      27 LITERALS      15 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/s12859-017-1621-0 schema:about N159f8ad6188a4d5ba7fd192ef4fdd5a9
2 N4a27c110586f4d7f9f76b082962e9ab7
3 N9499d5ea2e2d43c59397beaa373d43d9
4 Nba2a2744dbf047bfb3fd1bfba82b527a
5 Nd056d55c7f454c64adac1a645a28c501
6 Ndde153587827494c94c05e53681a6474
7 anzsrc-for:06
8 anzsrc-for:0604
9 schema:author N2e8212c0664d448e91030044aa34b9e6
10 schema:citation sg:pub.10.1038/nature14222
11 sg:pub.10.1186/gb-2010-11-2-r22
12 sg:pub.10.1186/s12864-015-2140-x
13 sg:pub.10.1186/s13059-015-0806-y
14 sg:pub.10.1186/s13059-015-0831-x
15 https://doi.org/10.1016/j.cell.2014.11.021
16 https://doi.org/10.1016/j.cels.2015.07.012
17 https://doi.org/10.1016/j.cels.2016.07.002
18 https://doi.org/10.1093/bioinformatics/btq033
19 https://doi.org/10.1101/gr.160374.113
20 https://doi.org/10.1101/gr.229102
21 https://doi.org/10.1126/science.1181369
22 schema:datePublished 2017-12
23 schema:datePublishedReg 2017-12-01
24 schema:description BACKGROUND: Genomic interaction studies use next-generation sequencing (NGS) to examine the interactions between two loci on the genome, with subsequent bioinformatics analyses typically including annotation, intersection, and merging of data from multiple experiments. While many file types and analysis tools exist for storing and manipulating single locus NGS data, there is currently no file standard or analysis tool suite for manipulating and storing paired-genomic-loci: the data type resulting from "genomic interaction" studies. As genomic interaction sequencing data are becoming prevalent, a standard file format and tools for working with these data conveniently and efficiently are needed. RESULTS: This article details a file standard and novel software tool suite for working with paired-genomic-loci data. We present the paired-genomic-loci (PGL) file standard for genomic-interactions data, and the accompanying analysis tool suite "pgltools": a cross platform, pypy compatible python package available both as an easy-to-use UNIX package, and as a python module, for integration into pipelines of paired-genomic-loci analyses. CONCLUSIONS: Pgltools is a freely available, open source tool suite for manipulating paired-genomic-loci data. Source code, an in-depth manual, and a tutorial are available publicly at www.github.com/billgreenwald/pgltools , and a python module of the operations can be installed from PyPI via the PyGLtools module.
25 schema:genre research_article
26 schema:inLanguage en
27 schema:isAccessibleForFree true
28 schema:isPartOf N28ffeccaeaad4b68a8eec2ccf5267884
29 N5fe4593bca8541c087ed8952207b1d5f
30 sg:journal.1023786
31 schema:name Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data
32 schema:pagination 207
33 schema:productId N02055f7e173a4ed69f21d163a958fdb4
34 N0c5b9f03114546f38baa2d67a03f565a
35 N338badc13ed245d896e78ceb366e0032
36 N6b408ba4dc0e46f7b7938f8cbceb63e6
37 Nff1e7dc31f704b9f8a15e353013003ae
38 schema:sameAs https://app.dimensions.ai/details/publication/pub.1084612327
39 https://doi.org/10.1186/s12859-017-1621-0
40 schema:sdDatePublished 2019-04-11T10:19
41 schema:sdLicense https://scigraph.springernature.com/explorer/license/
42 schema:sdPublisher N0e737f33fdfd46bfa25a755926e000af
43 schema:url https://link.springer.com/10.1186%2Fs12859-017-1621-0
44 sgo:license sg:explorer/license/
45 sgo:sdDataset articles
46 rdf:type schema:ScholarlyArticle
47 N02055f7e173a4ed69f21d163a958fdb4 schema:name dimensions_id
48 schema:value pub.1084612327
49 rdf:type schema:PropertyValue
50 N09ecc24a48944393970343557b10f45a rdf:first sg:person.01366516712.58
51 rdf:rest N9969a23a29a24f05b69cbc03e93c98ed
52 N0c5b9f03114546f38baa2d67a03f565a schema:name pubmed_id
53 schema:value 28388874
54 rdf:type schema:PropertyValue
55 N0e737f33fdfd46bfa25a755926e000af schema:name Springer Nature - SN SciGraph project
56 rdf:type schema:Organization
57 N159f8ad6188a4d5ba7fd192ef4fdd5a9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
58 schema:name High-Throughput Nucleotide Sequencing
59 rdf:type schema:DefinedTerm
60 N2345469aca874f9ab80bec1aa30f9a89 rdf:first sg:person.01251302407.13
61 rdf:rest N09ecc24a48944393970343557b10f45a
62 N28ffeccaeaad4b68a8eec2ccf5267884 schema:volumeNumber 18
63 rdf:type schema:PublicationVolume
64 N2e8212c0664d448e91030044aa34b9e6 rdf:first sg:person.016310134163.51
65 rdf:rest Nd5a94b3044ae4f91b5092c25f0a9096e
66 N338badc13ed245d896e78ceb366e0032 schema:name doi
67 schema:value 10.1186/s12859-017-1621-0
68 rdf:type schema:PropertyValue
69 N4a27c110586f4d7f9f76b082962e9ab7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
70 schema:name Chromatin
71 rdf:type schema:DefinedTerm
72 N5fe4593bca8541c087ed8952207b1d5f schema:issueNumber 1
73 rdf:type schema:PublicationIssue
74 N6b408ba4dc0e46f7b7938f8cbceb63e6 schema:name nlm_unique_id
75 schema:value 100965194
76 rdf:type schema:PropertyValue
77 N9499d5ea2e2d43c59397beaa373d43d9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
78 schema:name Chromatin Immunoprecipitation
79 rdf:type schema:DefinedTerm
80 N9969a23a29a24f05b69cbc03e93c98ed rdf:first sg:person.0774756245.11
81 rdf:rest rdf:nil
82 Nba2a2744dbf047bfb3fd1bfba82b527a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Genomics
84 rdf:type schema:DefinedTerm
85 Nc049661af48d40a88e944fdc2ab7c6f4 rdf:first sg:person.01141732751.86
86 rdf:rest N2345469aca874f9ab80bec1aa30f9a89
87 Nd056d55c7f454c64adac1a645a28c501 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Software
89 rdf:type schema:DefinedTerm
90 Nd5a94b3044ae4f91b5092c25f0a9096e rdf:first sg:person.011202553123.11
91 rdf:rest Nc049661af48d40a88e944fdc2ab7c6f4
92 Ndde153587827494c94c05e53681a6474 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
93 schema:name Genetic Loci
94 rdf:type schema:DefinedTerm
95 Nff1e7dc31f704b9f8a15e353013003ae schema:name readcube_id
96 schema:value a1d444abcc33a33ecfeab3a971b792963756c60032c2244a8002316fd449551e
97 rdf:type schema:PropertyValue
98 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
99 schema:name Biological Sciences
100 rdf:type schema:DefinedTerm
101 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
102 schema:name Genetics
103 rdf:type schema:DefinedTerm
104 sg:grant.2507960 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
105 rdf:type schema:MonetaryGrant
106 sg:grant.2692046 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
107 rdf:type schema:MonetaryGrant
108 sg:grant.3933407 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
109 rdf:type schema:MonetaryGrant
110 sg:grant.4055776 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
111 rdf:type schema:MonetaryGrant
112 sg:grant.6442718 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
113 rdf:type schema:MonetaryGrant
114 sg:grant.6848953 http://pending.schema.org/fundedItem sg:pub.10.1186/s12859-017-1621-0
115 rdf:type schema:MonetaryGrant
116 sg:journal.1023786 schema:issn 1471-2105
117 schema:name BMC Bioinformatics
118 rdf:type schema:Periodical
119 sg:person.011202553123.11 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
120 schema:familyName Li
121 schema:givenName He
122 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011202553123.11
123 rdf:type schema:Person
124 sg:person.01141732751.86 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
125 schema:familyName Smith
126 schema:givenName Erin N.
127 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01141732751.86
128 rdf:type schema:Person
129 sg:person.01251302407.13 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
130 schema:familyName Benaglio
131 schema:givenName Paola
132 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251302407.13
133 rdf:type schema:Person
134 sg:person.01366516712.58 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
135 schema:familyName Nariai
136 schema:givenName Naoki
137 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01366516712.58
138 rdf:type schema:Person
139 sg:person.016310134163.51 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
140 schema:familyName Greenwald
141 schema:givenName William W.
142 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016310134163.51
143 rdf:type schema:Person
144 sg:person.0774756245.11 schema:affiliation https://www.grid.ac/institutes/grid.266100.3
145 schema:familyName Frazer
146 schema:givenName Kelly A.
147 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0774756245.11
148 rdf:type schema:Person
149 sg:pub.10.1038/nature14222 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046074449
150 https://doi.org/10.1038/nature14222
151 rdf:type schema:CreativeWork
152 sg:pub.10.1186/gb-2010-11-2-r22 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026629820
153 https://doi.org/10.1186/gb-2010-11-2-r22
154 rdf:type schema:CreativeWork
155 sg:pub.10.1186/s12864-015-2140-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1006592396
156 https://doi.org/10.1186/s12864-015-2140-x
157 rdf:type schema:CreativeWork
158 sg:pub.10.1186/s13059-015-0806-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1036370983
159 https://doi.org/10.1186/s13059-015-0806-y
160 rdf:type schema:CreativeWork
161 sg:pub.10.1186/s13059-015-0831-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1036760229
162 https://doi.org/10.1186/s13059-015-0831-x
163 rdf:type schema:CreativeWork
164 https://doi.org/10.1016/j.cell.2014.11.021 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047951603
165 rdf:type schema:CreativeWork
166 https://doi.org/10.1016/j.cels.2015.07.012 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037240966
167 rdf:type schema:CreativeWork
168 https://doi.org/10.1016/j.cels.2016.07.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024198101
169 rdf:type schema:CreativeWork
170 https://doi.org/10.1093/bioinformatics/btq033 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036892131
171 rdf:type schema:CreativeWork
172 https://doi.org/10.1101/gr.160374.113 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022670502
173 rdf:type schema:CreativeWork
174 https://doi.org/10.1101/gr.229102 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022792016
175 rdf:type schema:CreativeWork
176 https://doi.org/10.1126/science.1181369 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007401642
177 rdf:type schema:CreativeWork
178 https://www.grid.ac/institutes/grid.266100.3 schema:alternateName University of California, San Diego
179 schema:name Bioinformatics and Systems Biology, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
180 Department of Pediatrics and Rady Children’s Hospital, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
181 Institute for Genomic Medicine, University of California, San Diego, 9500 Gilman Drive, 92093, La Jolla, CA, USA
182 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...