Ontology type: schema:ScholarlyArticle Open Access: True
2015-12
AUTHORSBenildo G de los Reyes, Bijayalaxmi Mohanty, Song Joong Yun, Myoung-Ryoul Park, Dong-Yup Lee
ABSTRACTDissecting the upstream regulatory architecture of rice genes and their cognate regulator proteins is at the core of network biology and its applications to comparative functional genomics. With the rapidly advancing comparative genomics resources in the genus Oryza, a reference genome annotation that defines the various cis-elements and trans-acting factors that interface each gene locus with various intrinsic and extrinsic signals for growth, development, reproduction and adaptation must be established to facilitate the understanding of phenotypic variation in the context of regulatory networks. Such information is also important to establish the foundation for mining non-coding sequence variation that defines novel alleles and epialleles across the enormous phenotypic diversity represented in rice germplasm. This review presents a synthesis of the state of knowledge and consensus trends regarding the various cis-acting and trans-acting components that define spatio-temporal regulation of rice genes based on representative examples from both foundational studies in other model and non-model plants, and more recent studies in rice. The goal is to summarize the baseline for systematic upstream sequence annotation of the rapidly advancing genome sequence resources in Oryza in preparation for genus-wide functional genomics. Perspectives on the potential applications of such information for gene discovery, network engineering and genomics-enabled rice breeding are also discussed. More... »
PAGES14
http://scigraph.springernature.com/pub.10.1186/s12284-015-0041-x
DOIhttp://dx.doi.org/10.1186/s12284-015-0041-x
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1028312702
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/25844119
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "University of Maine",
"id": "https://www.grid.ac/institutes/grid.21106.34",
"name": [
"School of Biology and Ecology, University of Maine, 04469, Orono, ME, USA"
],
"type": "Organization"
},
"familyName": "de los Reyes",
"givenName": "Benildo G",
"id": "sg:person.01142044037.37",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142044037.37"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of Singapore",
"id": "https://www.grid.ac/institutes/grid.4280.e",
"name": [
"Department of Chemical and Biomolecular Engineering, National University of Singapore, 117576, Singapore, Singapore"
],
"type": "Organization"
},
"familyName": "Mohanty",
"givenName": "Bijayalaxmi",
"id": "sg:person.01264756666.14",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01264756666.14"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Chonbuk National University",
"id": "https://www.grid.ac/institutes/grid.411545.0",
"name": [
"Department of Crop Science and Institute of Agricultural Science and Technology, Chonbuk National University, 561-756, Chonju, Korea"
],
"type": "Organization"
},
"familyName": "Yun",
"givenName": "Song Joong",
"id": "sg:person.01210157237.00",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01210157237.00"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Maine",
"id": "https://www.grid.ac/institutes/grid.21106.34",
"name": [
"School of Biology and Ecology, University of Maine, 04469, Orono, ME, USA"
],
"type": "Organization"
},
"familyName": "Park",
"givenName": "Myoung-Ryoul",
"id": "sg:person.01025615437.87",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01025615437.87"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National University of Singapore",
"id": "https://www.grid.ac/institutes/grid.4280.e",
"name": [
"Department of Chemical and Biomolecular Engineering, National University of Singapore, 117576, Singapore, Singapore"
],
"type": "Organization"
},
"familyName": "Lee",
"givenName": "Dong-Yup",
"id": "sg:person.01232565475.18",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232565475.18"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/dnares/8.5.193",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000334030"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2011.04610.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000601962"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2002.01302.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000628512"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.2050",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001125924",
"https://doi.org/10.1038/nbt.2050"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-8-42",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001429649",
"https://doi.org/10.1186/1471-2105-8-42"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.10.9.1571",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001530264"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00016490",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002169894",
"https://doi.org/10.1007/bf00016490"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00016490",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002169894",
"https://doi.org/10.1007/bf00016490"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/18.23.6845",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002176494"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01969712",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002431148",
"https://doi.org/10.1007/bf01969712"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2007.03168.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002746224"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0003093",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002962985"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bti334",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003059579"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-008-9423-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003063268",
"https://doi.org/10.1007/s11103-008-9423-4"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3040.2010.02221.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003098497"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3040.2010.02221.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003098497"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.94.3.1035",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003205415"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.106.046250",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003239896"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.13.5.999",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003907586"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ncomms2596",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003966675",
"https://doi.org/10.1038/ncomms2596"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/msk016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006099875"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0014-5793(86)81335-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006210220"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.92.10.4114",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006483473"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/aob/mcm079",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006664432"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.11.3.323",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007059656"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2003.01661.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007224468"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1015207114117",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007284435",
"https://doi.org/10.1023/a:1015207114117"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0002944",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007488377"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00037068",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008140582",
"https://doi.org/10.1007/bf00037068"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00037068",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008140582",
"https://doi.org/10.1007/bf00037068"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1369-5266(00)80068-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008904137"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.6.2.251",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008937360"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/27.1.297",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009420442"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.1112400109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009779338"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/ern110",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010029644"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/30.1.325",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011170329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.arplant.50.1.571",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011576306"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btn537",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011929696"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0080253",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012105804"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1019818110761",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012193592",
"https://doi.org/10.1023/a:1019818110761"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2004.11.015",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012590425"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.106.041129",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012616537"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2003.01708.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012741776"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.010548",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012851124"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00282746",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012928511",
"https://doi.org/10.1007/bf00282746"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-8-260",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013792075",
"https://doi.org/10.1186/1471-2164-8-260"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.010785",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013981029"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.273.41.26857",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014376142"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.009548",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015131069"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/9780470988800.ch8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015155548"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/9780470988800.ch8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015155548"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-13-497",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015426355",
"https://doi.org/10.1186/1471-2164-13-497"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1993.04020357.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015671490"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0168-9525(00)02081-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016085959"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pcq195",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016099420"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/48.2.181",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016191270"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.12.5.771",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016194070"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.3.11.1155",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016257559"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1152/physiolgenomics.00201.2003",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016647155"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2004.02288.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016972059"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.gene.2007.01.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017133262"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1026459229671",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017302105",
"https://doi.org/10.1023/a:1026459229671"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1155/2009/583429",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017400579"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.010181",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017456987"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-6-25",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017704493",
"https://doi.org/10.1186/1471-2164-6-25"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2011.00098",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017950425"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.7.10.1681",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017954181"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.110.078543",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018147167"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/erq076",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018156796"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.002261",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018277194"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-009-9474-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018304486",
"https://doi.org/10.1007/s11103-009-9474-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2229-10-14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018579468",
"https://doi.org/10.1186/1471-2229-10-14"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-006-0138-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019133620",
"https://doi.org/10.1007/s00299-006-0138-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-006-0138-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019133620",
"https://doi.org/10.1007/s00299-006-0138-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-006-0138-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019133620",
"https://doi.org/10.1007/s00299-006-0138-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-004-6237-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020001962",
"https://doi.org/10.1007/s11103-004-6237-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-004-6237-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020001962",
"https://doi.org/10.1007/s11103-004-6237-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-011-9755-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020270199",
"https://doi.org/10.1007/s11103-011-9755-3"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1467-7652.2007.00271.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020408284"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2011.00001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020491386"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2011.04709.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020698230"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.273.17.10120",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021104070"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-011-1161-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021675313",
"https://doi.org/10.1007/s00299-011-1161-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-011-1161-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021675313",
"https://doi.org/10.1007/s00299-011-1161-4"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.10.8.1391",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022328841"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.124.4.1854",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022567933"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/mp/sst149",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022599998"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2009.01.005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022663645"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.103.025742",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023118127"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.96.26.15348",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023380567"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1006342412688",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023561102",
"https://doi.org/10.1023/a:1006342412688"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1360-1385(00)01571-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023563983"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2005.02434.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023999741"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2005.02434.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023999741"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.003046",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024190262"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12284-009-9025-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024460736",
"https://doi.org/10.1007/s12284-009-9025-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12284-009-9025-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024460736",
"https://doi.org/10.1007/s12284-009-9025-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04373",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025118579",
"https://doi.org/10.1038/nature04373"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04373",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025118579",
"https://doi.org/10.1038/nature04373"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04373",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025118579",
"https://doi.org/10.1038/nature04373"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-003-0657-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025219335",
"https://doi.org/10.1007/s00299-003-0657-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-003-0657-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025219335",
"https://doi.org/10.1007/s00299-003-0657-y"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/ers079",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025311450"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.924301",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025635784"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tplants.2012.05.011",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025787412"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.arplant.57.032905.105316",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026082516"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.gene.2012.09.048",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026160058"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkr043",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026810460"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.7.10.1611",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027122744"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.1077503",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027243437"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2013.02.014",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027258749"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.008417",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027275937"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/29.7.1524",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027399928"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jxb/ert298",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027614863"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1999.00570.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027729311"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1364-3703.2011.00732.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027941497"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev-genet-102108-134148",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028060361"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0051609",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028154515"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-62703-194-3_21",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028184116",
"https://doi.org/10.1007/978-1-62703-194-3_21"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5511/plantbiotechnology.11.1216a",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028437793"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-8-175",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028589352",
"https://doi.org/10.1186/1471-2164-8-175"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1475-4924-2-11",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028754124",
"https://doi.org/10.1186/1475-4924-2-11"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/7036",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028884552",
"https://doi.org/10.1038/7036"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/7036",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028884552",
"https://doi.org/10.1038/7036"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1467-7652.2003.00004.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029059246"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0168-9452(96)04360-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029116721"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-4-25",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029125216",
"https://doi.org/10.1186/1471-2105-4-25"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1939-8433-5-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029412930",
"https://doi.org/10.1186/1939-8433-5-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.cr.7290329",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029659460",
"https://doi.org/10.1038/sj.cr.7290329"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.cr.7290329",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029659460",
"https://doi.org/10.1038/sj.cr.7290329"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.003483",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029811391"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m109722200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030066377"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-012-1698-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030323672",
"https://doi.org/10.1007/s00425-012-1698-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030453622",
"https://doi.org/10.1038/nature04028"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030453622",
"https://doi.org/10.1038/nature04028"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature04028",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030453622",
"https://doi.org/10.1038/nature04028"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-008-9353-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031310058",
"https://doi.org/10.1007/s11103-008-9353-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.106.047415",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031389225"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/24.1.238",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031417336"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00043871",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031686488",
"https://doi.org/10.1007/bf00043871"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00043871",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031686488",
"https://doi.org/10.1007/bf00043871"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1360-1385(01)02223-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031763881"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1006161802334",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031896140",
"https://doi.org/10.1023/a:1006161802334"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkj094",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032126679"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2009.10.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032690211"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-8-67",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032698484",
"https://doi.org/10.1186/1471-2164-8-67"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1139/g09-001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032981869"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.5.11.1627",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033048457"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2003.01990.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033075359"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10142-005-0142-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033326652",
"https://doi.org/10.1007/s10142-005-0142-5"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10142-005-0142-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033326652",
"https://doi.org/10.1007/s10142-005-0142-5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.5.11.1529",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033766263"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1006/bbrc.1998.9267",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033893067"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pci152",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034546947"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pci152",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034546947"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.8.7.1107",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034616517"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1534-5807(04)00028-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034756624"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.016980",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034813743"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-10-284",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034959975",
"https://doi.org/10.1186/1471-2164-10-284"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg3163",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035127193",
"https://doi.org/10.1038/nrg3163"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/cr.2007.104",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035185718",
"https://doi.org/10.1038/cr.2007.104"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1026561029533",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035403850",
"https://doi.org/10.1023/a:1026561029533"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btl107",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035523219"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12284-008-9017-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035568901",
"https://doi.org/10.1007/s12284-008-9017-4"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1467-7652.2008.00393.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035748113"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0958-1669(97)80103-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036101106"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0168-9452(94)90005-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036466076"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1369-5266(03)00045-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036637531"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s1369-5266(03)00045-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036637531"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.103.027169",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036840520"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.12.3.393",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036939949"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0018094",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037134051"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2885",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037426325",
"https://doi.org/10.1038/nrg2885"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrg2885",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037426325",
"https://doi.org/10.1038/nrg2885"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ydbio.2009.08.009",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037956146"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/jexbot/51.suppl_1.329",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037964087"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.105.030981",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038127915"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0092-8674(89)90176-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038400292"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pci153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038883285"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pnsc.2008.10.014",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039517738"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2004.02267.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039645476"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00039623",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040077382",
"https://doi.org/10.1007/bf00039623"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00039623",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040077382",
"https://doi.org/10.1007/bf00039623"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1006070413843",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040637032",
"https://doi.org/10.1023/a:1006070413843"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.11.22.3020",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040902057"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-008-0830-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040991982",
"https://doi.org/10.1007/s00425-008-0830-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-008-0830-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040991982",
"https://doi.org/10.1007/s00425-008-0830-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.010364",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041599497"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.2003.01753.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042045282"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1146/annurev.phyto.050908.135202",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042136135"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.phytochem.2009.07.018",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042193233"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkg108",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042444027"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1994.5060815.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042635570"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.pbi.2006.07.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042752249"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.102.017814",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043101265"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbagrm.2012.02.016",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043265385"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1034/j.1399-3054.2001.1130101.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043590343"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jplph.2011.12.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043700890"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature03543",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044604443",
"https://doi.org/10.1038/nature03543"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature03543",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044604443",
"https://doi.org/10.1038/nature03543"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11103-008-9309-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044915845",
"https://doi.org/10.1007/s11103-008-9309-5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkp805",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045000927"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11427-013-4576-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045146930",
"https://doi.org/10.1007/s11427-013-4576-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11427-013-4576-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045146930",
"https://doi.org/10.1007/s11427-013-4576-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10142-005-0005-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045565882",
"https://doi.org/10.1007/s10142-005-0005-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10142-005-0005-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045565882",
"https://doi.org/10.1007/s10142-005-0005-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-313x.2004.02176.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045992317"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-007-0687-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046152647",
"https://doi.org/10.1007/s00425-007-0687-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00425-007-0687-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046152647",
"https://doi.org/10.1007/s00425-007-0687-8"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.7.2.173",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046359715"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-013-1441-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047120602",
"https://doi.org/10.1007/s00299-013-1441-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00299-013-1441-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047120602",
"https://doi.org/10.1007/s00299-013-1441-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tplants.2004.12.012",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047126827"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pbio.0020258",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047715365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.108.129791",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047734369"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ygeno.2006.04.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048009799"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.110.157123",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048118232"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.105.038844",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048294697"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.222702",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048515218"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0930314100",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048569837"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.105.039958",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048658075"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.13.1.61",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048706611"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2012.00041",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049451350"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00293832",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050086821",
"https://doi.org/10.1007/bf00293832"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkm841",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050399589"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature03441",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050742226",
"https://doi.org/10.1038/nature03441"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature03441",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050742226",
"https://doi.org/10.1038/nature03441"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-313x.1998.00243.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050914824"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/pcp/pcd057",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050969558"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.2.2.163",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051237062"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkq1141",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051416424"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.106.043729",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051781410"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.7.3.295",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051839112"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2229-10-16",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052815543",
"https://doi.org/10.1186/1471-2229-10-16"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.011650",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053186930"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gad.937701",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053391242"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.108.128579",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053554141"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.105.071316",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053704552"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi-19-0958",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060078414"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi-20-11-1406",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060078539"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/phyto.2004.94.8.819",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060102367"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.108.2.633",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060840766"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.113.2.313",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060841279"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.13.8.1959",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060842188"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.2145628",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062524139"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.276.5320.1865",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062557084"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.280.5360.104",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062560558"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3868928",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467031"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869643",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467632"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869736",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467712"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869744",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467720"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869852",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467816"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3869993",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467939"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870023",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467966"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870029",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070467972"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870355",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468260"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870530",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468415"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870620",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468494"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870648",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468518"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3870944",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468776"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871000",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468826"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070468962"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871331",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070469122"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2307/3871359",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070469146"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4161/psb.5.7.11769",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072309351"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1074681679",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1079305530",
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/j.1460-2075.1994.tb06873.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1082582533"
],
"type": "CreativeWork"
}
],
"datePublished": "2015-12",
"datePublishedReg": "2015-12-01",
"description": "Dissecting the upstream regulatory architecture of rice genes and their cognate regulator proteins is at the core of network biology and its applications to comparative functional genomics. With the rapidly advancing comparative genomics resources in the genus Oryza, a reference genome annotation that defines the various cis-elements and trans-acting factors that interface each gene locus with various intrinsic and extrinsic signals for growth, development, reproduction and adaptation must be established to facilitate the understanding of phenotypic variation in the context of regulatory networks. Such information is also important to establish the foundation for mining non-coding sequence variation that defines novel alleles and epialleles across the enormous phenotypic diversity represented in rice germplasm. This review presents a synthesis of the state of knowledge and consensus trends regarding the various cis-acting and trans-acting components that define spatio-temporal regulation of rice genes based on representative examples from both foundational studies in other model and non-model plants, and more recent studies in rice. The goal is to summarize the baseline for systematic upstream sequence annotation of the rapidly advancing genome sequence resources in Oryza in preparation for genus-wide functional genomics. Perspectives on the potential applications of such information for gene discovery, network engineering and genomics-enabled rice breeding are also discussed. ",
"genre": "research_article",
"id": "sg:pub.10.1186/s12284-015-0041-x",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1041344",
"issn": [
"1939-8425",
"1939-8433"
],
"name": "Rice",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "8"
}
],
"name": "Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining",
"pagination": "14",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"86e062f1a05006bbf1100c067526902ad4b16cb411420b1b1d2aec4599766ed6"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"25844119"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101503136"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/s12284-015-0041-x"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1028312702"
]
}
],
"sameAs": [
"https://doi.org/10.1186/s12284-015-0041-x",
"https://app.dimensions.ai/details/publication/pub.1028312702"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T09:59",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000347_0000000347/records_89814_00000001.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1186%2Fs12284-015-0041-x"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/s12284-015-0041-x'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/s12284-015-0041-x'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/s12284-015-0041-x'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/s12284-015-0041-x'
This table displays all metadata directly associated to this object as RDF triples.
871 TRIPLES
21 PREDICATES
267 URIs
21 LITERALS
9 BLANK NODES