Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-03-04

AUTHORS

David B Neale, Jill L Wegrzyn, Kristian A Stevens, Aleksey V Zimin, Daniela Puiu, Marc W Crepeau, Charis Cardeno, Maxim Koriabine, Ann E Holtz-Morris, John D Liechty, Pedro J Martínez-García, Hans A Vasquez-Gross, Brian Y Lin, Jacob J Zieve, William M Dougherty, Sara Fuentes-Soriano, Le-Shin Wu, Don Gilbert, Guillaume Marçais, Michael Roberts, Carson Holt, Mark Yandell, John M Davis, Katherine E Smith, Jeffrey FD Dean, W Walter Lorenz, Ross W Whetten, Ronald Sederoff, Nicholas Wheeler, Patrick E McGuire, Doreen Main, Carol A Loopstra, Keithanne Mockaitis, Pieter J deJong, James A Yorke, Steven L Salzberg, Charles H Langley

ABSTRACT

BackgroundThe size and complexity of conifer genomes has, until now, prevented full genome sequencing and assembly. The large research community and economic importance of loblolly pine, Pinus taeda L., made it an early candidate for reference sequence determination.ResultsWe develop a novel strategy to sequence the genome of loblolly pine that combines unique aspects of pine reproductive biology and genome assembly methodology. We use a whole genome shotgun approach relying primarily on next generation sequence generated from a single haploid seed megagametophyte from a loblolly pine tree, 20-1010, that has been used in industrial forest tree breeding. The resulting sequence and assembly was used to generate a draft genome spanning 23.2 Gbp and containing 20.1 Gbp with an N50 scaffold size of 66.9 kbp, making it a significant improvement over available conifer genomes. The long scaffold lengths allow the annotation of 50,172 gene models with intron lengths averaging over 2.7 kbp and sometimes exceeding 100 kbp in length. Analysis of orthologous gene sets identifies gene families that may be unique to conifers. We further characterize and expand the existing repeat library based on the de novo analysis of the repetitive content, estimated to encompass 82% of the genome.ConclusionsIn addition to its value as a resource for researchers and breeders, the loblolly pine genome sequence and assembly reported here demonstrates a novel approach to sequencing the large and complex genomes of this important group of plants that can now be widely applied. More... »

PAGES

r59

References to SciGraph publications

  • 2012-05-31. SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection in TREE GENETICS & GENOMES
  • 2011-05-24. Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.) in BMC GENOMICS
  • 2011-05-03. Chalcone synthase and its functions in plant resistance in PHYTOCHEMISTRY REVIEWS
  • 2010-06-29. R proteins as fundamentals of plant innate immunity in CELLULAR & MOLECULAR BIOLOGY LETTERS
  • 2009-12-13. The sequence and de novo assembly of the giant panda genome in NATURE
  • 2013-12-10. EXCAVATOR: detecting copy number variants from whole-exome sequencing data in GENOME BIOLOGY
  • 2013-06-24. Open access to tree genomes: the path to a better forest in GENOME BIOLOGY
  • 2013-08-30. Web Apollo: a web-based genomic annotation editing platform in GENOME BIOLOGY
  • 2011-11-10. Variation in telomeric repeats of Scots pine (Pinus sylvestris L.) in TREE GENETICS & GENOMES
  • 2011-10-28. Using MCL to Extract Clusters from Networks in BACTERIAL MOLECULAR NETWORKS
  • 2006-02-17. Isolation of a full-length CC–NBS–LRR resistance gene analog candidate from sugar pine showing low nucleotide diversity in TREE GENETICS & GENOMES
  • 2009-02-20. Phylogenomic Relationships of Rice Oxalate Oxidases to the Cupin Superfamily and Their Association with Disease Resistance QTL in RICE
  • 2006-07. Germin-like genes are expressed during somatic embryogenesis and early development of conifers in PLANT MOLECULAR BIOLOGY
  • 2005-03. Analysis of telomere length and telomerase activity in tree species of various life-spans, and with age in the bristlecone pine Pinus longaeva in BIOGERONTOLOGY
  • 2012-12-27. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler in GIGASCIENCE
  • 2006-02-15. Association of the cad-n1 allele with increased stem growth and wood density in full-sib families of loblolly pine in TREE GENETICS & GENOMES
  • 2013-08-20. Combination of multipoint maximum likelihood (MML) and regression mapping algorithms to construct a high-density genetic linkage map for loblolly pine (Pinus taeda L.) in TREE GENETICS & GENOMES
  • 2005-02-08. Genetic dissection of fusiform rust and pitch canker disease traits in loblolly pine in THEORETICAL AND APPLIED GENETICS
  • 2012-03-06. Dehydrins in maritime pine (Pinus pinaster) and their expression related to drought stress response in TREE GENETICS & GENOMES
  • 2012-07-16. Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.) in BMC GENOMIC DATA
  • 1999-02. IFG, a gypsy-like retrotransposon in Pinus (Pinaceae), has an extensive history in pines in PLANT MOLECULAR BIOLOGY
  • 2008-11-09. Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana in NATURE GENETICS
  • 2010-10-23. Comparative mapping in Pinus: sugar pine (Pinus lambertiana Dougl.) and loblolly pine (Pinus taeda L.) in TREE GENETICS & GENOMES
  • 2009-12-02. Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes in BMC BIOLOGY
  • 2013-05-22. The Norway spruce genome sequence and conifer genome evolution in NATURE
  • 2011-06-08. Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus in BMC GENOMICS
  • Journal

    TITLE

    Genome Biology

    ISSUE

    3

    VOLUME

    15

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2014-15-3-r59

    DOI

    http://dx.doi.org/10.1186/gb-2014-15-3-r59

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1015810857

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24647006


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