MetAMOS: a modular and open source metagenomic assembly and analysis pipeline View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-01

AUTHORS

Todd J Treangen, Sergey Koren, Daniel D Sommer, Bo Liu, Irina Astrovskaya, Brian Ondov, Aaron E Darling, Adam M Phillippy, Mihai Pop

ABSTRACT

We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS. More... »

PAGES

r2

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2013-14-1-r2

    DOI

    http://dx.doi.org/10.1186/gb-2013-14-1-r2

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1013525643

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/23320958


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