Cistrome: an integrative platform for transcriptional regulation studies View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-08

AUTHORS

Tao Liu, Jorge A Ortiz, Len Taing, Clifford A Meyer, Bernett Lee, Yong Zhang, Hyunjin Shin, Swee S Wong, Jian Ma, Ying Lei, Utz J Pape, Michael Poidinger, Yiwen Chen, Kevin Yeung, Myles Brown, Yaron Turpaz, X Shirley Liu

ABSTRACT

The increasing volume of ChIP-chip and ChIP-seq data being generated creates a challenge for standard, integrative and reproducible bioinformatics data analysis platforms. We developed a web-based application called Cistrome, based on the Galaxy open source framework. In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/. More... »

PAGES

r83

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/gb-2011-12-8-r83

DOI

http://dx.doi.org/10.1186/gb-2011-12-8-r83

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1025406648

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21859476


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