A standard variation file format for human genome sequences View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-08

AUTHORS

Martin G Reese, Barry Moore, Colin Batchelor, Fidel Salas, Fiona Cunningham, Gabor T Marth, Lincoln Stein, Paul Flicek, Mark Yandell, Karen Eilbeck

ABSTRACT

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment. More... »

PAGES

r88

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/gb-2010-11-8-r88

DOI

http://dx.doi.org/10.1186/gb-2010-11-8-r88

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1025532561

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/20796305


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curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-8-r88'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-8-r88'


 

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