Estimating enrichment of repetitive elements from high-throughput sequence data View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-06

AUTHORS

Daniel S Day, Lovelace J Luquette, Peter J Park, Peter V Kharchenko

ABSTRACT

We describe computational methods for analysis of repetitive elements from short-read sequencing data, and apply them to study histone modifications associated with the repetitive elements in human and mouse cells. Our results demonstrate that while accurate enrichment estimates can be obtained for individual repeat types and small sets of repeat instances, there are distinct combinatorial patterns of chromatin marks associated with major annotated repeat families, including H3K27me3/H3K9me3 differences among the endogenous retroviral element classes. More... »

PAGES

r69

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2010-11-6-r69

    DOI

    http://dx.doi.org/10.1186/gb-2010-11-6-r69

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1008026977

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/20584328


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    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-6-r69'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-6-r69'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-6-r69'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/gb-2010-11-6-r69'


     

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