Ontology type: schema:ScholarlyArticle Open Access: True
2008-08
AUTHORSEran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult, Joel L Sussman
ABSTRACTMany scientists lack the background to fully utilize the wealth of solved three-dimensional biomacromolecule structures. Thus, a resource is needed to present structure/function information in a user-friendly manner to a broad scientific audience. Proteopedia http://www.proteopedia.org is an interactive, wiki web-resource whose pages have embedded three-dimensional structures surrounded by descriptive text containing hyperlinks that change the appearance (view, representations, colors, labels) of the adjacent three-dimensional structure to reflect the concept explained in the text. More... »
PAGESr121
http://scigraph.springernature.com/pub.10.1186/gb-2008-9-8-r121
DOIhttp://dx.doi.org/10.1186/gb-2008-9-8-r121
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1048532549
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/18673581
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0801",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Artificial Intelligence and Image Processing",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Information and Computing Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Databases, Protein",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Internet",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Models, Molecular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Protein Conformation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Protein Structure, Tertiary",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Software",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Weizmann Institute of Science",
"id": "https://www.grid.ac/institutes/grid.13992.30",
"name": [
"Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel",
"The Israel Structural Proteomics Center, Weizmann Institute of Science, 76100, Rehovot, Israel",
"Current Address: Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, 76100, Rehovot, Israel"
],
"type": "Organization"
},
"familyName": "Hodis",
"givenName": "Eran",
"id": "sg:person.0767312615.75",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0767312615.75"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Weizmann Institute of Science",
"id": "https://www.grid.ac/institutes/grid.13992.30",
"name": [
"Biological Services Unit, Weizmann Institute of Science, 76100, Rehovot, Israel"
],
"type": "Organization"
},
"familyName": "Prilusky",
"givenName": "Jaime",
"id": "sg:person.072151164.59",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.072151164.59"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Massachusetts Amherst",
"id": "https://www.grid.ac/institutes/grid.266683.f",
"name": [
"Department of Microbiology, University of Massachusetts, 01003, Amherst, MA, USA"
],
"type": "Organization"
},
"familyName": "Martz",
"givenName": "Eric",
"id": "sg:person.01132520467.71",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01132520467.71"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Weizmann Institute of Science",
"id": "https://www.grid.ac/institutes/grid.13992.30",
"name": [
"The Israel Structural Proteomics Center, Weizmann Institute of Science, 76100, Rehovot, Israel",
"Neurobiology Department, Weizmann Institute of Science, 76100, Rehovot, Israel"
],
"type": "Organization"
},
"familyName": "Silman",
"givenName": "Israel",
"id": "sg:person.01210435406.33",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01210435406.33"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Maryland, College Park",
"id": "https://www.grid.ac/institutes/grid.164295.d",
"name": [
"Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 20850, Rockville, MD, USA"
],
"type": "Organization"
},
"familyName": "Moult",
"givenName": "John",
"id": "sg:person.01267513661.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01267513661.81"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Weizmann Institute of Science",
"id": "https://www.grid.ac/institutes/grid.13992.30",
"name": [
"Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel",
"The Israel Structural Proteomics Center, Weizmann Institute of Science, 76100, Rehovot, Israel"
],
"type": "Organization"
},
"familyName": "Sussman",
"givenName": "Joel L",
"id": "sg:person.0721613255.01",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0721613255.01"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1016/j.tibs.2007.03.008",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004487444"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-8-316",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007052806",
"https://doi.org/10.1186/1471-2105-8-316"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2007-8-6-107",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007077544",
"https://doi.org/10.1186/gb-2007-8-6-107"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gki485",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011722080"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.molcel.2006.05.015",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014000595"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-531-91691-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016530700",
"https://doi.org/10.1007/978-3-531-91691-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-531-91691-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016530700",
"https://doi.org/10.1007/978-3-531-91691-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tibs.2005.12.006",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018277868"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gki370",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023193375"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/bmb.20457",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024705236"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bth248",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026681178"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature06879",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027980204",
"https://doi.org/10.1038/nature06879"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s008940050092",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028038624",
"https://doi.org/10.1007/s008940050092"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/28.1.235",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035055456"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/pro.5560010102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035454061"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/pro.5560010102",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035454061"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0968-0004(01)02008-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036251864"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkm277",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042102853"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/npre.2009.3123.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044194000",
"https://doi.org/10.1038/npre.2009.3123.1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1150799",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047056557"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/scientificamerican0666-42",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1056556292",
"https://doi.org/10.1038/scientificamerican0666-42"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1126/science.1585175",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062493006"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5860/choice.46-3257",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1073429371"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1107/97809553602060000718",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1088838760"
],
"type": "CreativeWork"
}
],
"datePublished": "2008-08",
"datePublishedReg": "2008-08-01",
"description": "Many scientists lack the background to fully utilize the wealth of solved three-dimensional biomacromolecule structures. Thus, a resource is needed to present structure/function information in a user-friendly manner to a broad scientific audience. Proteopedia http://www.proteopedia.org is an interactive, wiki web-resource whose pages have embedded three-dimensional structures surrounded by descriptive text containing hyperlinks that change the appearance (view, representations, colors, labels) of the adjacent three-dimensional structure to reflect the concept explained in the text.",
"genre": "research_article",
"id": "sg:pub.10.1186/gb-2008-9-8-r121",
"inLanguage": [
"en"
],
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1023439",
"issn": [
"1474-760X",
"1465-6906"
],
"name": "Genome Biology",
"type": "Periodical"
},
{
"issueNumber": "8",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "9"
}
],
"name": "Proteopedia- a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules",
"pagination": "r121",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"e7337a015f54c45d1bcb22cbb2e2d0f511a60d148e3ed1399df4d8595160f565"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"18673581"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"100960660"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/gb-2008-9-8-r121"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1048532549"
]
}
],
"sameAs": [
"https://doi.org/10.1186/gb-2008-9-8-r121",
"https://app.dimensions.ai/details/publication/pub.1048532549"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T17:33",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8672_00000516.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1186%2Fgb-2008-9-8-r121"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/gb-2008-9-8-r121'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/gb-2008-9-8-r121'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/gb-2008-9-8-r121'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/gb-2008-9-8-r121'
This table displays all metadata directly associated to this object as RDF triples.
215 TRIPLES
21 PREDICATES
58 URIs
28 LITERALS
16 BLANK NODES