Annotating genomes with massive-scale RNA sequencing View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2008-12

AUTHORS

France Denoeud, Jean-Marc Aury, Corinne Da Silva, Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave

ABSTRACT

Next generation technologies enable massive-scale cDNA sequencing (so-called RNA-Seq). Mainly because of the difficulty of aligning short reads on exon-exon junctions, no attempts have been made so far to use RNA-Seq for building gene models de novo, that is, in the absence of a set of known genes and/or splicing events. We present G-Mo.R-Se (Gene Modelling using RNA-Seq), an approach aimed at building gene models directly from RNA-Seq and demonstrate its utility on the grapevine genome. More... »

PAGES

r175

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/gb-2008-9-12-r175

DOI

http://dx.doi.org/10.1186/gb-2008-9-12-r175

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1016469219

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/19087247


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