A simple, fast, and accurate method of phylogenomic inference View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2008-10

AUTHORS

Martin Wu, Jonathan A Eisen

ABSTRACT

The explosive growth of genomic data provides an opportunity to make increased use of protein markers for phylogenetic inference. We have developed an automated pipeline for phylogenomic analysis (AMPHORA) that overcomes the existing bottlenecks limiting large-scale protein phylogenetic inference. We demonstrated its high throughput capabilities and high quality results by constructing a genome tree of 578 bacterial species and by assigning phylotypes to 18,607 protein markers identified in metagenomic data collected from the Sargasso Sea. More... »

PAGES

r151

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/gb-2008-9-10-r151

DOI

http://dx.doi.org/10.1186/gb-2008-9-10-r151

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1023248704

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/18851752


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