Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-11-13

AUTHORS

Nichole L King, Eric W Deutsch, Jeffrey A Ranish, Alexey I Nesvizhskii, James S Eddes, Parag Mallick, Jimmy Eng, Frank Desiere, Mark Flory, Daniel B Martin, Bong Kim, Hookeun Lee, Brian Raught, Ruedi Aebersold

ABSTRACT

We present the Saccharomyces cerevisiae PeptideAtlas composed from 47 diverse experiments and 4.9 million tandem mass spectra. The observed peptides align to 61% of Saccharomyces Genome Database (SGD) open reading frames (ORFs), 49% of the uncharacterized SGD ORFs, 54% of S. cerevisiae ORFs with a Gene Ontology annotation of 'molecular function unknown', and 76% of ORFs with Gene names. We highlight the use of this resource for data mining, construction of high quality lists for targeted proteomics, validation of proteins, and software development. More... »

PAGES

r106

References to SciGraph publications

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  • 2004-11-01. A common open representation of mass spectrometry data and its application to proteomics research in NATURE BIOTECHNOLOGY
  • 2003-10. Global analysis of protein expression in yeast in NATURE
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  • 1994-11-01. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database in JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2006-7-11-r106

    DOI

    http://dx.doi.org/10.1186/gb-2006-7-11-r106

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1003853639

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/17101051


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