Bioconductor: open software development for computational biology and bioinformatics View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2004-09-15

AUTHORS

Robert C Gentleman, Vincent J Carey, Douglas M Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony J Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean YH Yang, Jianhua Zhang

ABSTRACT

The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples. More... »

PAGES

r80

References to SciGraph publications

  • 2002-05. Creating a bioinformatics nation in NATURE
  • 2002. Sweave: Dynamic Generation of Statistical Reports Using Literate Data Analysis in COMPSTAT
  • 2005-01-01. Boost in VLSI-DESIGN OF NON-VOLATILE MEMORIES
  • 2003. MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments in THE ANALYSIS OF GENE EXPRESSION DATA
  • 1995. WaveLab and Reproducible Research in WAVELETS AND STATISTICS
  • Journal

    TITLE

    Genome Biology

    ISSUE

    10

    VOLUME

    5

    Author Affiliations

  • Department of Biostatistical Science, Dana-Farber Cancer Institute, 44 Binney St, 02115, Boston, MA, USA
  • Channing Laboratory, Brigham and Women's Hospital, 75 Francis Street, 02115, Boston, MA, USA
  • Department of Statistics, University of Wisconsin-Madison, 1210 W Dayton St, 53706, Madison, WI, USA
  • Division of Biostatistics, University of California, Berkeley, 140 Warren Hall, 94720-7360, Berkeley, CA, USA
  • Seminar for Statistics LEO C16, CH-8092, ETH Zentrum, Zürich, Switzerl
  • Department of Statistics, Harvard University, 1 Oxford St, 02138, Cambridge, MA, USA
  • Center for Biological Sequence Analysis, Technical University of Denmark, Building 208, 2800, Lyngby, Denmark
  • Department of Biomathematical Sciences, Mount Sinai School of Medicine, 1 Gustave Levy Place, Box 1023, 10029, New York, NY, USA
  • Institut für Statistik und Wahrscheinlichkeitstheorie, TU Wien, Wiedner Hauptstrasse 8-10/1071, 1040, Wien, Austria
  • Institut für Medizininformatik, Biometrie und Epidemiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Waldstraße6, D-91054, Erlangen, Germany
  • Division of Molecular Genome Analysis, DKFZ (German Cancer Research Center), 69120, Heidelberg, Germany
  • Department of Economics, University of Milan, 23 Via Mercalli, I-20123, Milan, Italy
  • Department of Biostatistics, Johns Hopkins University, 615 N Wolfe St E3035, 21205, Baltimore, MD, USA
  • Department of Medical Education and Biomedical Informatics, University of Washington, Box 357240, 195998195, NE Pacific, Seattle, WA, USA
  • Statistisches Labor, Institut für Angewandte Mathematik, Im Neuenheimer Feld 294, D 69120, Heidelberg, Germany
  • Department of Molecular Biology, The Scripps Research Institute, 92037, La Jolla, 10550 North Torrey Pines Road, TPC-28CA, USA
  • Division of Genetics and Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, 3050, Parkville, Victoria, Australia
  • Department of Statistics and Actuarial Science, University of Iowa, 241 Schaeffer Hall, 52242, Iowa City, IA, USA
  • Center for Bioinformatics and Molecular Biostatistics, Univerisity of California, San Francisco, 500 Parnassus Ave, 94143-0560, San Francisco, USA
  • Related Patents

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80

    DOI

    http://dx.doi.org/10.1186/gb-2004-5-10-r80

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1018457673

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15461798


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