Bioconductor: open software development for computational biology and bioinformatics View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2004-09

AUTHORS

Robert C Gentleman, Vincent J Carey, Douglas M Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony J Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean YH Yang, Jianhua Zhang

ABSTRACT

The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples. More... »

PAGES

r80

References to SciGraph publications

  • 2003. MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments in THE ANALYSIS OF GENE EXPRESSION DATA
  • 2002-05. Creating a bioinformatics nation in NATURE
  • 2002. Sweave: Dynamic Generation of Statistical Reports Using Literate Data Analysis in COMPSTAT
  • 2005. Boost in VLSI-DESIGN OF NON-VOLATILE MEMORIES
  • 1995. WaveLab and Reproducible Research in WAVELETS AND STATISTICS
  • Journal

    TITLE

    Genome Biology

    ISSUE

    10

    VOLUME

    5

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80

    DOI

    http://dx.doi.org/10.1186/gb-2004-5-10-r80

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1018457673

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/15461798


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    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/gb-2004-5-10-r80'


     

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