Multiplex single-nucleotide polymorphism typing of the human Y chromosome using TaqMan probes View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-12

AUTHORS

Begoña Martínez-Cruz, Janet Ziegle, Paula Sanz, Graciela Sotelo, Roger Anglada, Stéphanie Plaza, David Comas, the Genographic Consortium

ABSTRACT

BACKGROUND: The analysis of human Y-chromosome variation in the context of population genetics and forensics requires the genotyping of dozens to hundreds of selected single-nucleotide polymorphisms (SNPs). In the present study, we developed a 121-plex (121 SNPs in a single array) TaqMan array capable of distinguishing most haplogroups and subhaplogroups on the Y-chromosome human phylogeny in Europe. RESULTS: We present data from 264 samples from several European areas and ethnic groups. The array developed in this study shows >99% accuracy of assignation to the Y human phylogeny (with an average call rate of genotypes >96%). CONCLUSIONS: We have created and evaluated a robust and accurate Y-chromosome multiplex which minimises the possible errors due to mixup when typing the same sample in several independent reactions. More... »

PAGES

13

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/2041-2223-2-13

DOI

http://dx.doi.org/10.1186/2041-2223-2-13

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1015742137

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/21627798


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