Introducing glycomics data into the Semantic Web View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-11-26

AUTHORS

Kiyoko F Aoki-Kinoshita, Jerven Bolleman, Matthew P Campbell, Shin Kawano, Jin-Dong Kim, Thomas Lütteke, Masaaki Matsubara, Shujiro Okuda, Rene Ranzinger, Hiromichi Sawaki, Toshihide Shikanai, Daisuke Shinmachi, Yoshinori Suzuki, Philip Toukach, Issaku Yamada, Nicolle H Packer, Hisashi Narimatsu

ABSTRACT

BACKGROUND: Glycoscience is a research field focusing on complex carbohydrates (otherwise known as glycans)a, which can, for example, serve as "switches" that toggle between different functions of a glycoprotein or glycolipid. Due to the advancement of glycomics technologies that are used to characterize glycan structures, many glycomics databases are now publicly available and provide useful information for glycoscience research. However, these databases have almost no link to other life science databases. RESULTS: In order to implement support for the Semantic Web most efficiently for glycomics research, the developers of major glycomics databases agreed on a minimal standard for representing glycan structure and annotation information using RDF (Resource Description Framework). Moreover, all of the participants implemented this standard prototype and generated preliminary RDF versions of their data. To test the utility of the converted data, all of the data sets were uploaded into a Virtuoso triple store, and several SPARQL queries were tested as "proofs-of-concept" to illustrate the utility of the Semantic Web in querying across databases which were originally difficult to implement. CONCLUSIONS: We were able to successfully retrieve information by linking UniCarbKB, GlycomeDB and JCGGDB in a single SPARQL query to obtain our target information. We also tested queries linking UniProt with GlycoEpitope as well as lectin data with GlycomeDB through PDB. As a result, we have been able to link proteomics data with glycomics data through the implementation of Semantic Web technologies, allowing for more flexible queries across these domains. More... »

PAGES

39-39

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/2041-1480-4-39

DOI

http://dx.doi.org/10.1186/2041-1480-4-39

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1014019240

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24280648


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information and Computing Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0804", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Data Format", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information Systems", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan", 
          "id": "http://www.grid.ac/institutes/grid.412664.3", 
          "name": [
            "Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Aoki-Kinoshita", 
        "givenName": "Kiyoko F", 
        "id": "sg:person.0577034150.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0577034150.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Swiss Institute of Bioinformatics, CMU 1, rue Michel Servet 1211, Geneva 4, Switzerland", 
          "id": "http://www.grid.ac/institutes/grid.419765.8", 
          "name": [
            "Swiss Institute of Bioinformatics, CMU 1, rue Michel Servet 1211, Geneva 4, Switzerland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bolleman", 
        "givenName": "Jerven", 
        "id": "sg:person.01300247434.89", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300247434.89"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia", 
          "id": "http://www.grid.ac/institutes/grid.1004.5", 
          "name": [
            "Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Campbell", 
        "givenName": "Matthew P", 
        "id": "sg:person.01303007173.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01303007173.10"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan", 
          "id": "http://www.grid.ac/institutes/grid.418987.b", 
          "name": [
            "Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kawano", 
        "givenName": "Shin", 
        "id": "sg:person.01355601215.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01355601215.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan", 
          "id": "http://www.grid.ac/institutes/grid.418987.b", 
          "name": [
            "Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kim", 
        "givenName": "Jin-Dong", 
        "id": "sg:person.01064234462.70", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01064234462.70"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Frankfurter Str. 100, 35392 Giessen, Germany", 
          "id": "http://www.grid.ac/institutes/grid.8664.c", 
          "name": [
            "Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Frankfurter Str. 100, 35392 Giessen, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "L\u00fctteke", 
        "givenName": "Thomas", 
        "id": "sg:person.0606113256.06", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606113256.06"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan", 
          "id": "http://www.grid.ac/institutes/grid.472138.b", 
          "name": [
            "Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Matsubara", 
        "givenName": "Masaaki", 
        "id": "sg:person.01177601564.96", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01177601564.96"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Niigata University Graduate School of Medical and Dental Sciences, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8510, Japan", 
          "id": "http://www.grid.ac/institutes/grid.260975.f", 
          "name": [
            "Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan", 
            "Niigata University Graduate School of Medical and Dental Sciences, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8510, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Okuda", 
        "givenName": "Shujiro", 
        "id": "sg:person.0772364103.78", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0772364103.78"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA", 
          "id": "http://www.grid.ac/institutes/grid.213876.9", 
          "name": [
            "Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ranzinger", 
        "givenName": "Rene", 
        "id": "sg:person.01340553637.05", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340553637.05"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan", 
          "id": "http://www.grid.ac/institutes/grid.208504.b", 
          "name": [
            "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sawaki", 
        "givenName": "Hiromichi", 
        "id": "sg:person.01362143364.31", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362143364.31"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan", 
          "id": "http://www.grid.ac/institutes/grid.208504.b", 
          "name": [
            "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shikanai", 
        "givenName": "Toshihide", 
        "id": "sg:person.0625225531.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0625225531.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan", 
          "id": "http://www.grid.ac/institutes/grid.208504.b", 
          "name": [
            "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shinmachi", 
        "givenName": "Daisuke", 
        "id": "sg:person.0724711561.93", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0724711561.93"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan", 
          "id": "http://www.grid.ac/institutes/grid.208504.b", 
          "name": [
            "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Suzuki", 
        "givenName": "Yoshinori", 
        "id": "sg:person.01301215417.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01301215417.46"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "NMR Laboratory, N.D. Zelinsky Institute of Organic Chemistry, Leninsky prospekt 47, 119991 Moscow, Russia", 
          "id": "http://www.grid.ac/institutes/grid.439283.7", 
          "name": [
            "NMR Laboratory, N.D. Zelinsky Institute of Organic Chemistry, Leninsky prospekt 47, 119991 Moscow, Russia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Toukach", 
        "givenName": "Philip", 
        "id": "sg:person.010020051600.14", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010020051600.14"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan", 
          "id": "http://www.grid.ac/institutes/grid.472138.b", 
          "name": [
            "Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yamada", 
        "givenName": "Issaku", 
        "id": "sg:person.01067214264.52", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01067214264.52"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia", 
          "id": "http://www.grid.ac/institutes/grid.1004.5", 
          "name": [
            "Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Packer", 
        "givenName": "Nicolle H", 
        "id": "sg:person.0657131714.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0657131714.23"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan", 
          "id": "http://www.grid.ac/institutes/grid.208504.b", 
          "name": [
            "Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Narimatsu", 
        "givenName": "Hisashi", 
        "id": "sg:person.0612614370.21", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612614370.21"
        ], 
        "type": "Person"
      }
    ], 
    "datePublished": "2013-11-26", 
    "datePublishedReg": "2013-11-26", 
    "description": "BACKGROUND: Glycoscience is a research field focusing on complex carbohydrates (otherwise known as glycans)a, which can, for example, serve as \"switches\" that toggle between different functions of a glycoprotein or glycolipid. Due to the advancement of glycomics technologies that are used to characterize glycan structures, many glycomics databases are now publicly available and provide useful information for glycoscience research. However, these databases have almost no link to other life science databases.\nRESULTS: In order to implement support for the Semantic Web most efficiently for glycomics research, the developers of major glycomics databases agreed on a minimal standard for representing glycan structure and annotation information using RDF (Resource Description Framework). Moreover, all of the participants implemented this standard prototype and generated preliminary RDF versions of their data. To test the utility of the converted data, all of the data sets were uploaded into a Virtuoso triple store, and several SPARQL queries were tested as \"proofs-of-concept\" to illustrate the utility of the Semantic Web in querying across databases which were originally difficult to implement.\nCONCLUSIONS: We were able to successfully retrieve information by linking UniCarbKB, GlycomeDB and JCGGDB in a single SPARQL query to obtain our target information. We also tested queries linking UniProt with GlycoEpitope as well as lectin data with GlycomeDB through PDB. As a result, we have been able to link proteomics data with glycomics data through the implementation of Semantic Web technologies, allowing for more flexible queries across these domains.", 
    "genre": "article", 
    "id": "sg:pub.10.1186/2041-1480-4-39", 
    "inLanguage": "en", 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2439748", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1043573", 
        "issn": [
          "2041-1480"
        ], 
        "name": "Journal of Biomedical Semantics", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "4"
      }
    ], 
    "keywords": [
      "Semantic Web", 
      "SPARQL queries", 
      "Virtuoso triple store", 
      "Semantic Web technologies", 
      "single SPARQL query", 
      "life science databases", 
      "triple stores", 
      "Web technologies", 
      "flexible queries", 
      "RDF version", 
      "glycomics data", 
      "queries", 
      "annotation information", 
      "glycomics databases", 
      "target information", 
      "GlycomeDB", 
      "data sets", 
      "Web", 
      "research field", 
      "standard prototype", 
      "database", 
      "information", 
      "useful information", 
      "glycomics research", 
      "technology", 
      "RDF", 
      "developers", 
      "glycomics technologies", 
      "lectin data", 
      "UniCarbKB", 
      "UniProt", 
      "prototype", 
      "proteomic data", 
      "implementation", 
      "data", 
      "set", 
      "glycoscience research", 
      "advancement", 
      "proof", 
      "stores", 
      "research", 
      "version", 
      "domain", 
      "concept", 
      "utility", 
      "Science databases", 
      "different functions", 
      "example", 
      "standards", 
      "support", 
      "link", 
      "order", 
      "PDB", 
      "field", 
      "glycoscience", 
      "switch", 
      "structure", 
      "results", 
      "function", 
      "participants", 
      "glycan structures", 
      "minimal standards", 
      "glycoepitopes", 
      "complex carbohydrates", 
      "carbohydrates", 
      "glycoprotein", 
      "glycolipids", 
      "major glycomics databases", 
      "preliminary RDF versions", 
      "JCGGDB"
    ], 
    "name": "Introducing glycomics data into the Semantic Web", 
    "pagination": "39-39", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1014019240"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/2041-1480-4-39"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "24280648"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/2041-1480-4-39", 
      "https://app.dimensions.ai/details/publication/pub.1014019240"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2021-12-01T19:28", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20211201/entities/gbq_results/article/article_598.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1186/2041-1480-4-39"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-4-39'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-4-39'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-4-39'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-4-39'


 

This table displays all metadata directly associated to this object as RDF triples.

277 TRIPLES      21 PREDICATES      97 URIs      88 LITERALS      7 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/2041-1480-4-39 schema:about anzsrc-for:08
2 anzsrc-for:0804
3 anzsrc-for:0806
4 schema:author N6a5167bf5e0146bfa4382a0e6bef362f
5 schema:datePublished 2013-11-26
6 schema:datePublishedReg 2013-11-26
7 schema:description BACKGROUND: Glycoscience is a research field focusing on complex carbohydrates (otherwise known as glycans)a, which can, for example, serve as "switches" that toggle between different functions of a glycoprotein or glycolipid. Due to the advancement of glycomics technologies that are used to characterize glycan structures, many glycomics databases are now publicly available and provide useful information for glycoscience research. However, these databases have almost no link to other life science databases. RESULTS: In order to implement support for the Semantic Web most efficiently for glycomics research, the developers of major glycomics databases agreed on a minimal standard for representing glycan structure and annotation information using RDF (Resource Description Framework). Moreover, all of the participants implemented this standard prototype and generated preliminary RDF versions of their data. To test the utility of the converted data, all of the data sets were uploaded into a Virtuoso triple store, and several SPARQL queries were tested as "proofs-of-concept" to illustrate the utility of the Semantic Web in querying across databases which were originally difficult to implement. CONCLUSIONS: We were able to successfully retrieve information by linking UniCarbKB, GlycomeDB and JCGGDB in a single SPARQL query to obtain our target information. We also tested queries linking UniProt with GlycoEpitope as well as lectin data with GlycomeDB through PDB. As a result, we have been able to link proteomics data with glycomics data through the implementation of Semantic Web technologies, allowing for more flexible queries across these domains.
8 schema:genre article
9 schema:inLanguage en
10 schema:isAccessibleForFree true
11 schema:isPartOf N5f3fa16da3434c209e4f4ec9045052a1
12 Ne28fe031c0454b03a003ece240934e77
13 sg:journal.1043573
14 schema:keywords GlycomeDB
15 JCGGDB
16 PDB
17 RDF
18 RDF version
19 SPARQL queries
20 Science databases
21 Semantic Web
22 Semantic Web technologies
23 UniCarbKB
24 UniProt
25 Virtuoso triple store
26 Web
27 Web technologies
28 advancement
29 annotation information
30 carbohydrates
31 complex carbohydrates
32 concept
33 data
34 data sets
35 database
36 developers
37 different functions
38 domain
39 example
40 field
41 flexible queries
42 function
43 glycan structures
44 glycoepitopes
45 glycolipids
46 glycomics data
47 glycomics databases
48 glycomics research
49 glycomics technologies
50 glycoprotein
51 glycoscience
52 glycoscience research
53 implementation
54 information
55 lectin data
56 life science databases
57 link
58 major glycomics databases
59 minimal standards
60 order
61 participants
62 preliminary RDF versions
63 proof
64 proteomic data
65 prototype
66 queries
67 research
68 research field
69 results
70 set
71 single SPARQL query
72 standard prototype
73 standards
74 stores
75 structure
76 support
77 switch
78 target information
79 technology
80 triple stores
81 useful information
82 utility
83 version
84 schema:name Introducing glycomics data into the Semantic Web
85 schema:pagination 39-39
86 schema:productId N2e5ebb58e9204ac98e13e7d3c3011cd9
87 N475f19e839f4474f93fdf99b29c4f1b2
88 Ncbee2ba3904b476a93a79c751ab33c26
89 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014019240
90 https://doi.org/10.1186/2041-1480-4-39
91 schema:sdDatePublished 2021-12-01T19:28
92 schema:sdLicense https://scigraph.springernature.com/explorer/license/
93 schema:sdPublisher N046d993192254c72a4e01d3f324275d3
94 schema:url https://doi.org/10.1186/2041-1480-4-39
95 sgo:license sg:explorer/license/
96 sgo:sdDataset articles
97 rdf:type schema:ScholarlyArticle
98 N046d993192254c72a4e01d3f324275d3 schema:name Springer Nature - SN SciGraph project
99 rdf:type schema:Organization
100 N127ecf3bd84242eda70b8cfe456f1c83 rdf:first sg:person.0657131714.23
101 rdf:rest N1ff5fe46702f421cb5d6ae81a64ace27
102 N1851da52bc7d477faf795ebe1cff32be rdf:first sg:person.01340553637.05
103 rdf:rest N1eb3b40897b84affbe512cabc2972ec0
104 N1d55a0be320541f4ade7b1768a2d4bfa rdf:first sg:person.010020051600.14
105 rdf:rest Nbbfd91db3cb141b59f09512e560908f1
106 N1eb3b40897b84affbe512cabc2972ec0 rdf:first sg:person.01362143364.31
107 rdf:rest Nb3b171a5101d434e8461804f71944bc0
108 N1ff5fe46702f421cb5d6ae81a64ace27 rdf:first sg:person.0612614370.21
109 rdf:rest rdf:nil
110 N23a9b08a0857434b9a593f1ab12483f6 rdf:first sg:person.0606113256.06
111 rdf:rest N7f2354d710e64da9bcdddab2a283c50f
112 N250e8fc7df16466f9bc6a88e10f84122 rdf:first sg:person.01300247434.89
113 rdf:rest Nb20a6fd1086d459db85934579bb409cf
114 N2e5ebb58e9204ac98e13e7d3c3011cd9 schema:name dimensions_id
115 schema:value pub.1014019240
116 rdf:type schema:PropertyValue
117 N475f19e839f4474f93fdf99b29c4f1b2 schema:name pubmed_id
118 schema:value 24280648
119 rdf:type schema:PropertyValue
120 N50af96a670464b428d936fd33b8d5c7d rdf:first sg:person.0772364103.78
121 rdf:rest N1851da52bc7d477faf795ebe1cff32be
122 N5f3fa16da3434c209e4f4ec9045052a1 schema:issueNumber 1
123 rdf:type schema:PublicationIssue
124 N6a5167bf5e0146bfa4382a0e6bef362f rdf:first sg:person.0577034150.16
125 rdf:rest N250e8fc7df16466f9bc6a88e10f84122
126 N70340e6c6a4745f69ea12fa77befb8cc rdf:first sg:person.01064234462.70
127 rdf:rest N23a9b08a0857434b9a593f1ab12483f6
128 N7f2354d710e64da9bcdddab2a283c50f rdf:first sg:person.01177601564.96
129 rdf:rest N50af96a670464b428d936fd33b8d5c7d
130 Nb20a6fd1086d459db85934579bb409cf rdf:first sg:person.01303007173.10
131 rdf:rest Nfe40788a96044ef587b3e9b89fe46348
132 Nb3b171a5101d434e8461804f71944bc0 rdf:first sg:person.0625225531.01
133 rdf:rest Nfbcc1672f9fd4caeaa798e89ccbebbf4
134 Nbbfd91db3cb141b59f09512e560908f1 rdf:first sg:person.01067214264.52
135 rdf:rest N127ecf3bd84242eda70b8cfe456f1c83
136 Ncbee2ba3904b476a93a79c751ab33c26 schema:name doi
137 schema:value 10.1186/2041-1480-4-39
138 rdf:type schema:PropertyValue
139 Ndd59a0aee00b4b608dbab2a6a61a6682 rdf:first sg:person.01301215417.46
140 rdf:rest N1d55a0be320541f4ade7b1768a2d4bfa
141 Ne28fe031c0454b03a003ece240934e77 schema:volumeNumber 4
142 rdf:type schema:PublicationVolume
143 Nfbcc1672f9fd4caeaa798e89ccbebbf4 rdf:first sg:person.0724711561.93
144 rdf:rest Ndd59a0aee00b4b608dbab2a6a61a6682
145 Nfe40788a96044ef587b3e9b89fe46348 rdf:first sg:person.01355601215.37
146 rdf:rest N70340e6c6a4745f69ea12fa77befb8cc
147 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
148 schema:name Information and Computing Sciences
149 rdf:type schema:DefinedTerm
150 anzsrc-for:0804 schema:inDefinedTermSet anzsrc-for:
151 schema:name Data Format
152 rdf:type schema:DefinedTerm
153 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
154 schema:name Information Systems
155 rdf:type schema:DefinedTerm
156 sg:grant.2439748 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-4-39
157 rdf:type schema:MonetaryGrant
158 sg:journal.1043573 schema:issn 2041-1480
159 schema:name Journal of Biomedical Semantics
160 schema:publisher Springer Nature
161 rdf:type schema:Periodical
162 sg:person.010020051600.14 schema:affiliation grid-institutes:grid.439283.7
163 schema:familyName Toukach
164 schema:givenName Philip
165 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010020051600.14
166 rdf:type schema:Person
167 sg:person.01064234462.70 schema:affiliation grid-institutes:grid.418987.b
168 schema:familyName Kim
169 schema:givenName Jin-Dong
170 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01064234462.70
171 rdf:type schema:Person
172 sg:person.01067214264.52 schema:affiliation grid-institutes:grid.472138.b
173 schema:familyName Yamada
174 schema:givenName Issaku
175 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01067214264.52
176 rdf:type schema:Person
177 sg:person.01177601564.96 schema:affiliation grid-institutes:grid.472138.b
178 schema:familyName Matsubara
179 schema:givenName Masaaki
180 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01177601564.96
181 rdf:type schema:Person
182 sg:person.01300247434.89 schema:affiliation grid-institutes:grid.419765.8
183 schema:familyName Bolleman
184 schema:givenName Jerven
185 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300247434.89
186 rdf:type schema:Person
187 sg:person.01301215417.46 schema:affiliation grid-institutes:grid.208504.b
188 schema:familyName Suzuki
189 schema:givenName Yoshinori
190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01301215417.46
191 rdf:type schema:Person
192 sg:person.01303007173.10 schema:affiliation grid-institutes:grid.1004.5
193 schema:familyName Campbell
194 schema:givenName Matthew P
195 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01303007173.10
196 rdf:type schema:Person
197 sg:person.01340553637.05 schema:affiliation grid-institutes:grid.213876.9
198 schema:familyName Ranzinger
199 schema:givenName Rene
200 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01340553637.05
201 rdf:type schema:Person
202 sg:person.01355601215.37 schema:affiliation grid-institutes:grid.418987.b
203 schema:familyName Kawano
204 schema:givenName Shin
205 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01355601215.37
206 rdf:type schema:Person
207 sg:person.01362143364.31 schema:affiliation grid-institutes:grid.208504.b
208 schema:familyName Sawaki
209 schema:givenName Hiromichi
210 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362143364.31
211 rdf:type schema:Person
212 sg:person.0577034150.16 schema:affiliation grid-institutes:grid.412664.3
213 schema:familyName Aoki-Kinoshita
214 schema:givenName Kiyoko F
215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0577034150.16
216 rdf:type schema:Person
217 sg:person.0606113256.06 schema:affiliation grid-institutes:grid.8664.c
218 schema:familyName Lütteke
219 schema:givenName Thomas
220 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606113256.06
221 rdf:type schema:Person
222 sg:person.0612614370.21 schema:affiliation grid-institutes:grid.208504.b
223 schema:familyName Narimatsu
224 schema:givenName Hisashi
225 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0612614370.21
226 rdf:type schema:Person
227 sg:person.0625225531.01 schema:affiliation grid-institutes:grid.208504.b
228 schema:familyName Shikanai
229 schema:givenName Toshihide
230 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0625225531.01
231 rdf:type schema:Person
232 sg:person.0657131714.23 schema:affiliation grid-institutes:grid.1004.5
233 schema:familyName Packer
234 schema:givenName Nicolle H
235 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0657131714.23
236 rdf:type schema:Person
237 sg:person.0724711561.93 schema:affiliation grid-institutes:grid.208504.b
238 schema:familyName Shinmachi
239 schema:givenName Daisuke
240 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0724711561.93
241 rdf:type schema:Person
242 sg:person.0772364103.78 schema:affiliation grid-institutes:grid.260975.f
243 schema:familyName Okuda
244 schema:givenName Shujiro
245 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0772364103.78
246 rdf:type schema:Person
247 grid-institutes:grid.1004.5 schema:alternateName Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia
248 schema:name Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia
249 rdf:type schema:Organization
250 grid-institutes:grid.208504.b schema:alternateName Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan
251 schema:name Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan
252 rdf:type schema:Organization
253 grid-institutes:grid.213876.9 schema:alternateName Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA
254 schema:name Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, USA
255 rdf:type schema:Organization
256 grid-institutes:grid.260975.f schema:alternateName Niigata University Graduate School of Medical and Dental Sciences, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8510, Japan
257 schema:name Department of Bioinformatics, College of Life Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan
258 Niigata University Graduate School of Medical and Dental Sciences, 1-757 Asahimachi-dori, Chuo-ku, Niigata 951-8510, Japan
259 rdf:type schema:Organization
260 grid-institutes:grid.412664.3 schema:alternateName Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan
261 schema:name Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo 192-8577, Japan
262 rdf:type schema:Organization
263 grid-institutes:grid.418987.b schema:alternateName Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
264 schema:name Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan
265 rdf:type schema:Organization
266 grid-institutes:grid.419765.8 schema:alternateName Swiss Institute of Bioinformatics, CMU 1, rue Michel Servet 1211, Geneva 4, Switzerland
267 schema:name Swiss Institute of Bioinformatics, CMU 1, rue Michel Servet 1211, Geneva 4, Switzerland
268 rdf:type schema:Organization
269 grid-institutes:grid.439283.7 schema:alternateName NMR Laboratory, N.D. Zelinsky Institute of Organic Chemistry, Leninsky prospekt 47, 119991 Moscow, Russia
270 schema:name NMR Laboratory, N.D. Zelinsky Institute of Organic Chemistry, Leninsky prospekt 47, 119991 Moscow, Russia
271 rdf:type schema:Organization
272 grid-institutes:grid.472138.b schema:alternateName Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan
273 schema:name Laboratory of Glyco-organic Chemistry, The Noguchi Institute, 1-8-1 Kaga, Itabashi-ku, Tokyo 173-0003, Japan
274 rdf:type schema:Organization
275 grid-institutes:grid.8664.c schema:alternateName Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Frankfurter Str. 100, 35392 Giessen, Germany
276 schema:name Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Frankfurter Str. 100, 35392 Giessen, Germany
277 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...