Modeling biomedical experimental processes with OBI View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-06

AUTHORS

Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N Soldatova, Christian J Stoeckert, Jessica A Turner, Jie Zheng, the OBI consortium

ABSTRACT

BACKGROUND: Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval. RESULTS: The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI. CONCLUSION: We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components. AVAILABILITY: OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.owl. More... »

PAGES

s7

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s7

DOI

http://dx.doi.org/10.1186/2041-1480-1-s1-s7

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1036820478

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/20626927


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information and Computing Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "BC Cancer Agency", 
          "id": "https://www.grid.ac/institutes/grid.248762.d", 
          "name": [
            "British Columbia Cancer Agency, Vancouver, Canada"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Brinkman", 
        "givenName": "Ryan R", 
        "id": "sg:person.01165002016.00", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165002016.00"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "BC Cancer Agency", 
          "id": "https://www.grid.ac/institutes/grid.248762.d", 
          "name": [
            "British Columbia Cancer Agency, Vancouver, Canada"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Courtot", 
        "givenName": "M\u00e9lanie", 
        "id": "sg:person.0666667137.83", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0666667137.83"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Victoria University of Wellington", 
          "id": "https://www.grid.ac/institutes/grid.267827.e", 
          "name": [
            "Victoria University of Wellington, New Zealand"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Derom", 
        "givenName": "Dirk", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "SRA International (United States)", 
          "id": "https://www.grid.ac/institutes/grid.421489.2", 
          "name": [
            "Global Health Sector, SRA International, Inc, Durham, NC, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fostel", 
        "givenName": "Jennifer M", 
        "id": "sg:person.01043024505.98", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01043024505.98"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Michigan\u2013Ann Arbor", 
          "id": "https://www.grid.ac/institutes/grid.214458.e", 
          "name": [
            "University of Michigan Medical School, Ann Arbor, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "He", 
        "givenName": "Yongqun", 
        "id": "sg:person.01077275450.49", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077275450.49"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Newcastle University", 
          "id": "https://www.grid.ac/institutes/grid.1006.7", 
          "name": [
            "School of Computing Science, Newcastle University, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lord", 
        "givenName": "Phillip", 
        "id": "sg:person.0776355561.43", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0776355561.43"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "The European Bioinformatics Institute, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Malone", 
        "givenName": "James", 
        "id": "sg:person.0624506327.10", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624506327.10"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "The European Bioinformatics Institute, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Parkinson", 
        "givenName": "Helen", 
        "id": "sg:person.01247207307.77", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01247207307.77"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "La Jolla Institute For Allergy & Immunology", 
          "id": "https://www.grid.ac/institutes/grid.185006.a", 
          "name": [
            "La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Peters", 
        "givenName": "Bjoern", 
        "id": "sg:person.07447331037.97", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07447331037.97"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "The European Bioinformatics Institute, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Rocca-Serra", 
        "givenName": "Philippe", 
        "id": "sg:person.016542700247.80", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016542700247.80"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Science Commons, Cambridge, MA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ruttenberg", 
        "givenName": "Alan", 
        "id": "sg:person.0624415037.14", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624415037.14"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "The European Bioinformatics Institute, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sansone", 
        "givenName": "Susanna-Assunta", 
        "id": "sg:person.0635417117.92", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0635417117.92"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Aberystwyth University", 
          "id": "https://www.grid.ac/institutes/grid.8186.7", 
          "name": [
            "Aberystwyth University, Wales, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Soldatova", 
        "givenName": "Larisa N", 
        "id": "sg:person.01350623742.14", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350623742.14"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Pennsylvania", 
          "id": "https://www.grid.ac/institutes/grid.25879.31", 
          "name": [
            "Center for Bioinformatics, Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Stoeckert", 
        "givenName": "Christian J", 
        "id": "sg:person.0755415233.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0755415233.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of California, Irvine", 
          "id": "https://www.grid.ac/institutes/grid.266093.8", 
          "name": [
            "Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Turner", 
        "givenName": "Jessica A", 
        "id": "sg:person.01100221206.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100221206.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Pennsylvania", 
          "id": "https://www.grid.ac/institutes/grid.25879.31", 
          "name": [
            "Center for Bioinformatics, Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zheng", 
        "givenName": "Jie", 
        "id": "sg:person.01123205237.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123205237.16"
        ], 
        "type": "Person"
      }, 
      {
        "familyName": "the OBI consortium", 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1186/gb-2005-6-5-r46", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015285227", 
          "https://doi.org/10.1186/gb-2005-6-5-r46"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl207", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017563286"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1165620", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027153137"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt1346", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028001312", 
          "https://doi.org/10.1038/nbt1346"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11306-007-0069-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028640196", 
          "https://doi.org/10.1007/s11306-007-0069-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm1039", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030040932"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkn741", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030509007"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-10-125", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035794994", 
          "https://doi.org/10.1186/1471-2105-10-125"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s12021-008-9032-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039790320", 
          "https://doi.org/10.1007/s12021-008-9032-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1089/omi.2006.10.199", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042237937"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/75556", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044135237", 
          "https://doi.org/10.1038/75556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/75556", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044135237", 
          "https://doi.org/10.1038/75556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm883", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044505190"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pbio.0030091", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046426009"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046925392"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1098/rsif.2006.0134", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047930105"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/npre.2009.3576.1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049436269", 
          "https://doi.org/10.1038/npre.2009.3576.1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature00892", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049718629", 
          "https://doi.org/10.1038/nature00892"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature00892", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049718629", 
          "https://doi.org/10.1038/nature00892"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1077044115", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1077354135", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2010-06", 
    "datePublishedReg": "2010-06-01", 
    "description": "BACKGROUND: Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval.\nRESULTS: The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI.\nCONCLUSION: We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components.\nAVAILABILITY: OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.owl.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/2041-1480-1-s1-s7", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.2696491", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2347797", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2778509", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2439790", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2774097", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2779388", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2699165", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2551848", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2786741", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2458524", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.2501626", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1043573", 
        "issn": [
          "2041-1480"
        ], 
        "name": "Journal of Biomedical Semantics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "Suppl 1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "1"
      }
    ], 
    "name": "Modeling biomedical experimental processes with OBI", 
    "pagination": "s7", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "af662390ab22df3d9af3b7fa9040e4753658ce886adbe45be33f67a4b2a6f56b"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "20626927"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "101531992"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/2041-1480-1-s1-s7"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1036820478"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/2041-1480-1-s1-s7", 
      "https://app.dimensions.ai/details/publication/pub.1036820478"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T14:17", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000550.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2F2041-1480-1-S1-S7"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s7'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s7'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s7'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s7'


 

This table displays all metadata directly associated to this object as RDF triples.

290 TRIPLES      21 PREDICATES      48 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/2041-1480-1-s1-s7 schema:about anzsrc-for:08
2 anzsrc-for:0806
3 schema:author Nec92c85782414419b04b9d9779f5c514
4 schema:citation sg:pub.10.1007/s11306-007-0069-z
5 sg:pub.10.1007/s12021-008-9032-z
6 sg:pub.10.1038/75556
7 sg:pub.10.1038/nature00892
8 sg:pub.10.1038/nbt1346
9 sg:pub.10.1038/npre.2009.3576.1
10 sg:pub.10.1186/1471-2105-10-125
11 sg:pub.10.1186/gb-2005-6-5-r46
12 https://app.dimensions.ai/details/publication/pub.1077044115
13 https://app.dimensions.ai/details/publication/pub.1077354135
14 https://doi.org/10.1089/omi.2006.10.199
15 https://doi.org/10.1093/bioinformatics/btl005
16 https://doi.org/10.1093/bioinformatics/btl207
17 https://doi.org/10.1093/nar/gkm1039
18 https://doi.org/10.1093/nar/gkm883
19 https://doi.org/10.1093/nar/gkn741
20 https://doi.org/10.1098/rsif.2006.0134
21 https://doi.org/10.1126/science.1165620
22 https://doi.org/10.1371/journal.pbio.0030091
23 schema:datePublished 2010-06
24 schema:datePublishedReg 2010-06-01
25 schema:description BACKGROUND: Experimental descriptions are typically stored as free text without using standardized terminology, creating challenges in comparison, reproduction and analysis. These difficulties impose limitations on data exchange and information retrieval. RESULTS: The Ontology for Biomedical Investigations (OBI), developed as a global, cross-community effort, provides a resource that represents biomedical investigations in an explicit and integrative framework. Here we detail three real-world applications of OBI, provide detailed modeling information and explain how to use OBI. CONCLUSION: We demonstrate how OBI can be applied to different biomedical investigations to both facilitate interpretation of the experimental process and increase the computational processing and integration within the Semantic Web. The logical definitions of the entities involved allow computers to unambiguously understand and integrate different biological experimental processes and their relevant components. AVAILABILITY: OBI is available at http://purl.obolibrary.org/obo/obi/2009-11-02/obi.owl.
26 schema:genre research_article
27 schema:inLanguage en
28 schema:isAccessibleForFree true
29 schema:isPartOf N857da1451b174ee4aba3148a7e084565
30 Nbef9c2d877634c0ead2ee8ca6e7bf08a
31 sg:journal.1043573
32 schema:name Modeling biomedical experimental processes with OBI
33 schema:pagination s7
34 schema:productId N1354a67aaafb4fe8a682ee01e32b24f2
35 N2cb38980dc75467cbff0e9a51452188e
36 N7824ad9c230242c9af3443a3cdf39185
37 Na75b62e5dcf64de886c3cac971a71c55
38 Nbf73357727df4f58b25bb83a3f2d42f3
39 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036820478
40 https://doi.org/10.1186/2041-1480-1-s1-s7
41 schema:sdDatePublished 2019-04-10T14:17
42 schema:sdLicense https://scigraph.springernature.com/explorer/license/
43 schema:sdPublisher Nbe95783228e0469b97e46905045b7ec6
44 schema:url http://link.springer.com/10.1186%2F2041-1480-1-S1-S7
45 sgo:license sg:explorer/license/
46 sgo:sdDataset articles
47 rdf:type schema:ScholarlyArticle
48 N0999f7b51727474e8ae2d0c2f53dfa36 schema:affiliation https://www.grid.ac/institutes/grid.267827.e
49 schema:familyName Derom
50 schema:givenName Dirk
51 rdf:type schema:Person
52 N1354a67aaafb4fe8a682ee01e32b24f2 schema:name readcube_id
53 schema:value af662390ab22df3d9af3b7fa9040e4753658ce886adbe45be33f67a4b2a6f56b
54 rdf:type schema:PropertyValue
55 N160fc77c2a5c4fc1afadba421871ddf9 rdf:first sg:person.01077275450.49
56 rdf:rest Nddd5f8f80ec24c9a8f9951fead10c39d
57 N1ad6993ad9324bf3957956f3c48a7770 rdf:first N0999f7b51727474e8ae2d0c2f53dfa36
58 rdf:rest N9a7a377f6a484fc3b6bed3f7abb6d8ae
59 N2cb38980dc75467cbff0e9a51452188e schema:name dimensions_id
60 schema:value pub.1036820478
61 rdf:type schema:PropertyValue
62 N32fb5ed3a0a543c18e69cbcb0a447c71 rdf:first sg:person.0624415037.14
63 rdf:rest Nb469eca051a145d18840d75ca70d7f1c
64 N4711fddab0084c608ddf9d8bfe863df2 rdf:first sg:person.0624506327.10
65 rdf:rest N787630a6716a42dcac5652322cf57c5e
66 N67b414791a774d28a8bcef7cd2f9e20d rdf:first sg:person.07447331037.97
67 rdf:rest N7c8a96a8a94b478599ff6795e0b04a1d
68 N7824ad9c230242c9af3443a3cdf39185 schema:name pubmed_id
69 schema:value 20626927
70 rdf:type schema:PropertyValue
71 N787630a6716a42dcac5652322cf57c5e rdf:first sg:person.01247207307.77
72 rdf:rest N67b414791a774d28a8bcef7cd2f9e20d
73 N7c8a96a8a94b478599ff6795e0b04a1d rdf:first sg:person.016542700247.80
74 rdf:rest N32fb5ed3a0a543c18e69cbcb0a447c71
75 N7f7eded21cef46a1b2354aa9578f8541 rdf:first sg:person.0666667137.83
76 rdf:rest N1ad6993ad9324bf3957956f3c48a7770
77 N857da1451b174ee4aba3148a7e084565 schema:issueNumber Suppl 1
78 rdf:type schema:PublicationIssue
79 N9282860e3e3947499da2934cbc9e351e rdf:first sg:person.01100221206.66
80 rdf:rest Nae342761f7d44759a978df6826c37da4
81 N96f77847deeb40bb90cd4006224e6729 schema:name Science Commons, Cambridge, MA, USA
82 rdf:type schema:Organization
83 N9a7a377f6a484fc3b6bed3f7abb6d8ae rdf:first sg:person.01043024505.98
84 rdf:rest N160fc77c2a5c4fc1afadba421871ddf9
85 N9d19571b155647d188c68c907df303b1 schema:familyName the OBI consortium
86 rdf:type schema:Person
87 Na573aff1459441b6912fe1fe8db27531 rdf:first N9d19571b155647d188c68c907df303b1
88 rdf:rest rdf:nil
89 Na75b62e5dcf64de886c3cac971a71c55 schema:name doi
90 schema:value 10.1186/2041-1480-1-s1-s7
91 rdf:type schema:PropertyValue
92 Nae342761f7d44759a978df6826c37da4 rdf:first sg:person.01123205237.16
93 rdf:rest Na573aff1459441b6912fe1fe8db27531
94 Nb469eca051a145d18840d75ca70d7f1c rdf:first sg:person.0635417117.92
95 rdf:rest Neacf01428c644571b429b7ab3457f65c
96 Nbe95783228e0469b97e46905045b7ec6 schema:name Springer Nature - SN SciGraph project
97 rdf:type schema:Organization
98 Nbef9c2d877634c0ead2ee8ca6e7bf08a schema:volumeNumber 1
99 rdf:type schema:PublicationVolume
100 Nbf73357727df4f58b25bb83a3f2d42f3 schema:name nlm_unique_id
101 schema:value 101531992
102 rdf:type schema:PropertyValue
103 Nddd5f8f80ec24c9a8f9951fead10c39d rdf:first sg:person.0776355561.43
104 rdf:rest N4711fddab0084c608ddf9d8bfe863df2
105 Neacf01428c644571b429b7ab3457f65c rdf:first sg:person.01350623742.14
106 rdf:rest Nf49b9915981042fea908b5a4d1edbc13
107 Nec92c85782414419b04b9d9779f5c514 rdf:first sg:person.01165002016.00
108 rdf:rest N7f7eded21cef46a1b2354aa9578f8541
109 Nf49b9915981042fea908b5a4d1edbc13 rdf:first sg:person.0755415233.68
110 rdf:rest N9282860e3e3947499da2934cbc9e351e
111 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
112 schema:name Information and Computing Sciences
113 rdf:type schema:DefinedTerm
114 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
115 schema:name Information Systems
116 rdf:type schema:DefinedTerm
117 sg:grant.2347797 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
118 rdf:type schema:MonetaryGrant
119 sg:grant.2439790 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
120 rdf:type schema:MonetaryGrant
121 sg:grant.2458524 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
122 rdf:type schema:MonetaryGrant
123 sg:grant.2501626 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
124 rdf:type schema:MonetaryGrant
125 sg:grant.2551848 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
126 rdf:type schema:MonetaryGrant
127 sg:grant.2696491 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
128 rdf:type schema:MonetaryGrant
129 sg:grant.2699165 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
130 rdf:type schema:MonetaryGrant
131 sg:grant.2774097 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
132 rdf:type schema:MonetaryGrant
133 sg:grant.2778509 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
134 rdf:type schema:MonetaryGrant
135 sg:grant.2779388 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
136 rdf:type schema:MonetaryGrant
137 sg:grant.2786741 http://pending.schema.org/fundedItem sg:pub.10.1186/2041-1480-1-s1-s7
138 rdf:type schema:MonetaryGrant
139 sg:journal.1043573 schema:issn 2041-1480
140 schema:name Journal of Biomedical Semantics
141 rdf:type schema:Periodical
142 sg:person.01043024505.98 schema:affiliation https://www.grid.ac/institutes/grid.421489.2
143 schema:familyName Fostel
144 schema:givenName Jennifer M
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01043024505.98
146 rdf:type schema:Person
147 sg:person.01077275450.49 schema:affiliation https://www.grid.ac/institutes/grid.214458.e
148 schema:familyName He
149 schema:givenName Yongqun
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077275450.49
151 rdf:type schema:Person
152 sg:person.01100221206.66 schema:affiliation https://www.grid.ac/institutes/grid.266093.8
153 schema:familyName Turner
154 schema:givenName Jessica A
155 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100221206.66
156 rdf:type schema:Person
157 sg:person.01123205237.16 schema:affiliation https://www.grid.ac/institutes/grid.25879.31
158 schema:familyName Zheng
159 schema:givenName Jie
160 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123205237.16
161 rdf:type schema:Person
162 sg:person.01165002016.00 schema:affiliation https://www.grid.ac/institutes/grid.248762.d
163 schema:familyName Brinkman
164 schema:givenName Ryan R
165 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165002016.00
166 rdf:type schema:Person
167 sg:person.01247207307.77 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
168 schema:familyName Parkinson
169 schema:givenName Helen
170 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01247207307.77
171 rdf:type schema:Person
172 sg:person.01350623742.14 schema:affiliation https://www.grid.ac/institutes/grid.8186.7
173 schema:familyName Soldatova
174 schema:givenName Larisa N
175 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350623742.14
176 rdf:type schema:Person
177 sg:person.016542700247.80 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
178 schema:familyName Rocca-Serra
179 schema:givenName Philippe
180 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016542700247.80
181 rdf:type schema:Person
182 sg:person.0624415037.14 schema:affiliation N96f77847deeb40bb90cd4006224e6729
183 schema:familyName Ruttenberg
184 schema:givenName Alan
185 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624415037.14
186 rdf:type schema:Person
187 sg:person.0624506327.10 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
188 schema:familyName Malone
189 schema:givenName James
190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0624506327.10
191 rdf:type schema:Person
192 sg:person.0635417117.92 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
193 schema:familyName Sansone
194 schema:givenName Susanna-Assunta
195 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0635417117.92
196 rdf:type schema:Person
197 sg:person.0666667137.83 schema:affiliation https://www.grid.ac/institutes/grid.248762.d
198 schema:familyName Courtot
199 schema:givenName Mélanie
200 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0666667137.83
201 rdf:type schema:Person
202 sg:person.07447331037.97 schema:affiliation https://www.grid.ac/institutes/grid.185006.a
203 schema:familyName Peters
204 schema:givenName Bjoern
205 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07447331037.97
206 rdf:type schema:Person
207 sg:person.0755415233.68 schema:affiliation https://www.grid.ac/institutes/grid.25879.31
208 schema:familyName Stoeckert
209 schema:givenName Christian J
210 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0755415233.68
211 rdf:type schema:Person
212 sg:person.0776355561.43 schema:affiliation https://www.grid.ac/institutes/grid.1006.7
213 schema:familyName Lord
214 schema:givenName Phillip
215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0776355561.43
216 rdf:type schema:Person
217 sg:pub.10.1007/s11306-007-0069-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1028640196
218 https://doi.org/10.1007/s11306-007-0069-z
219 rdf:type schema:CreativeWork
220 sg:pub.10.1007/s12021-008-9032-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1039790320
221 https://doi.org/10.1007/s12021-008-9032-z
222 rdf:type schema:CreativeWork
223 sg:pub.10.1038/75556 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044135237
224 https://doi.org/10.1038/75556
225 rdf:type schema:CreativeWork
226 sg:pub.10.1038/nature00892 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049718629
227 https://doi.org/10.1038/nature00892
228 rdf:type schema:CreativeWork
229 sg:pub.10.1038/nbt1346 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028001312
230 https://doi.org/10.1038/nbt1346
231 rdf:type schema:CreativeWork
232 sg:pub.10.1038/npre.2009.3576.1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049436269
233 https://doi.org/10.1038/npre.2009.3576.1
234 rdf:type schema:CreativeWork
235 sg:pub.10.1186/1471-2105-10-125 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035794994
236 https://doi.org/10.1186/1471-2105-10-125
237 rdf:type schema:CreativeWork
238 sg:pub.10.1186/gb-2005-6-5-r46 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015285227
239 https://doi.org/10.1186/gb-2005-6-5-r46
240 rdf:type schema:CreativeWork
241 https://app.dimensions.ai/details/publication/pub.1077044115 schema:CreativeWork
242 https://app.dimensions.ai/details/publication/pub.1077354135 schema:CreativeWork
243 https://doi.org/10.1089/omi.2006.10.199 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042237937
244 rdf:type schema:CreativeWork
245 https://doi.org/10.1093/bioinformatics/btl005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046925392
246 rdf:type schema:CreativeWork
247 https://doi.org/10.1093/bioinformatics/btl207 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017563286
248 rdf:type schema:CreativeWork
249 https://doi.org/10.1093/nar/gkm1039 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030040932
250 rdf:type schema:CreativeWork
251 https://doi.org/10.1093/nar/gkm883 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044505190
252 rdf:type schema:CreativeWork
253 https://doi.org/10.1093/nar/gkn741 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030509007
254 rdf:type schema:CreativeWork
255 https://doi.org/10.1098/rsif.2006.0134 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047930105
256 rdf:type schema:CreativeWork
257 https://doi.org/10.1126/science.1165620 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027153137
258 rdf:type schema:CreativeWork
259 https://doi.org/10.1371/journal.pbio.0030091 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046426009
260 rdf:type schema:CreativeWork
261 https://www.grid.ac/institutes/grid.1006.7 schema:alternateName Newcastle University
262 schema:name School of Computing Science, Newcastle University, UK
263 rdf:type schema:Organization
264 https://www.grid.ac/institutes/grid.185006.a schema:alternateName La Jolla Institute For Allergy & Immunology
265 schema:name La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA
266 rdf:type schema:Organization
267 https://www.grid.ac/institutes/grid.214458.e schema:alternateName University of Michigan–Ann Arbor
268 schema:name University of Michigan Medical School, Ann Arbor, USA
269 rdf:type schema:Organization
270 https://www.grid.ac/institutes/grid.225360.0 schema:alternateName European Bioinformatics Institute
271 schema:name The European Bioinformatics Institute, Cambridge, UK
272 rdf:type schema:Organization
273 https://www.grid.ac/institutes/grid.248762.d schema:alternateName BC Cancer Agency
274 schema:name British Columbia Cancer Agency, Vancouver, Canada
275 rdf:type schema:Organization
276 https://www.grid.ac/institutes/grid.25879.31 schema:alternateName University of Pennsylvania
277 schema:name Center for Bioinformatics, Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA
278 rdf:type schema:Organization
279 https://www.grid.ac/institutes/grid.266093.8 schema:alternateName University of California, Irvine
280 schema:name Department of Psychiatry and Human Behavior, University of California, Irvine, CA, USA
281 rdf:type schema:Organization
282 https://www.grid.ac/institutes/grid.267827.e schema:alternateName Victoria University of Wellington
283 schema:name Victoria University of Wellington, New Zealand
284 rdf:type schema:Organization
285 https://www.grid.ac/institutes/grid.421489.2 schema:alternateName SRA International (United States)
286 schema:name Global Health Sector, SRA International, Inc, Durham, NC, USA
287 rdf:type schema:Organization
288 https://www.grid.ac/institutes/grid.8186.7 schema:alternateName Aberystwyth University
289 schema:name Aberystwyth University, Wales, UK
290 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...