ChEBI: a chemistry ontology and database View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-05

AUTHORS

Paula de Matos, A Dekker, M Ennis, Janna Hastings, K Haug, S Turner, Christoph Steinbeck

ABSTRACT

N/A

PAGES

p6

References to SciGraph publications

  • 2010-05. OrChem: an open source chemistry search engine for Oracle in JOURNAL OF CHEMINFORMATICS
  • Journal

    TITLE

    Journal of Cheminformatics

    ISSUE

    Suppl 1

    VOLUME

    2

    Author Affiliations

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1758-2946-2-s1-p6

    DOI

    http://dx.doi.org/10.1186/1758-2946-2-s1-p6

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1017778070


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "author": [
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "de Matos", 
            "givenName": "Paula", 
            "id": "sg:person.0740011675.76", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740011675.76"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Dekker", 
            "givenName": "A", 
            "id": "sg:person.01037163716.02", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037163716.02"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Ennis", 
            "givenName": "M", 
            "id": "sg:person.01157704762.78", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01157704762.78"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Hastings", 
            "givenName": "Janna", 
            "id": "sg:person.0606506716.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606506716.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Haug", 
            "givenName": "K", 
            "id": "sg:person.01271744546.41", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271744546.41"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Turner", 
            "givenName": "S", 
            "id": "sg:person.01143472526.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01143472526.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "European Bioinformatics Institute", 
              "id": "https://www.grid.ac/institutes/grid.225360.0", 
              "name": [
                "European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Steinbeck", 
            "givenName": "Christoph", 
            "id": "sg:person.012610137527.56", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012610137527.56"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1021/ci025584y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033183422"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1021/ci025584y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033183422"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkm791", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045387827"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1758-2946-2-s1-p28", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048576812", 
              "https://doi.org/10.1186/1758-2946-2-s1-p28"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2010-05", 
        "datePublishedReg": "2010-05-01", 
        "genre": "non_research_article", 
        "id": "sg:pub.10.1186/1758-2946-2-s1-p6", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isPartOf": [
          {
            "id": "sg:journal.1042252", 
            "issn": [
              "1758-2946"
            ], 
            "name": "Journal of Cheminformatics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "Suppl 1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "2"
          }
        ], 
        "name": "ChEBI: a chemistry ontology and database", 
        "pagination": "p6", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "54b4ba4e699369061c6051282e799d83a7de69c0921d8f4b15140d1389b5b38e"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/1758-2946-2-s1-p6"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1017778070"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/1758-2946-2-s1-p6", 
          "https://app.dimensions.ai/details/publication/pub.1017778070"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T22:31", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000512.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2F1758-2946-2-S1-P6"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1758-2946-2-s1-p6'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1758-2946-2-s1-p6'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1758-2946-2-s1-p6'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1758-2946-2-s1-p6'


     

    This table displays all metadata directly associated to this object as RDF triples.

    103 TRIPLES      19 PREDICATES      27 URIs      18 LITERALS      7 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/1758-2946-2-s1-p6 schema:author N4d2acf09113441028d16a02e0ac5608c
    2 schema:citation sg:pub.10.1186/1758-2946-2-s1-p28
    3 https://doi.org/10.1021/ci025584y
    4 https://doi.org/10.1093/nar/gkm791
    5 schema:datePublished 2010-05
    6 schema:datePublishedReg 2010-05-01
    7 schema:genre non_research_article
    8 schema:inLanguage en
    9 schema:isAccessibleForFree true
    10 schema:isPartOf N3c7b33028c6c4df787848f9378ce99a5
    11 N3d0dc3b196da4f5abfa8db6bf99e064b
    12 sg:journal.1042252
    13 schema:name ChEBI: a chemistry ontology and database
    14 schema:pagination p6
    15 schema:productId N40bbc6eb2d9d414bbf80ec4d46b3f7bc
    16 N52bf706305f5417db939bfede6416e8d
    17 N82f6d956c7204ddcbe8f81b50d8a8d9a
    18 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017778070
    19 https://doi.org/10.1186/1758-2946-2-s1-p6
    20 schema:sdDatePublished 2019-04-10T22:31
    21 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    22 schema:sdPublisher Nb3b950d1bb99496bad35361602b0fd49
    23 schema:url http://link.springer.com/10.1186%2F1758-2946-2-S1-P6
    24 sgo:license sg:explorer/license/
    25 sgo:sdDataset articles
    26 rdf:type schema:ScholarlyArticle
    27 N1a862c8e227941f7b7acac31c2325752 rdf:first sg:person.01157704762.78
    28 rdf:rest Ne159c64a6e584865bfeb403c92854d45
    29 N1d0db8a5fa0f4d9d9892309e68dc9e53 rdf:first sg:person.01143472526.54
    30 rdf:rest Nb7814425ac0b4284919ba88c104bfab8
    31 N3c7b33028c6c4df787848f9378ce99a5 schema:issueNumber Suppl 1
    32 rdf:type schema:PublicationIssue
    33 N3d0dc3b196da4f5abfa8db6bf99e064b schema:volumeNumber 2
    34 rdf:type schema:PublicationVolume
    35 N40bbc6eb2d9d414bbf80ec4d46b3f7bc schema:name readcube_id
    36 schema:value 54b4ba4e699369061c6051282e799d83a7de69c0921d8f4b15140d1389b5b38e
    37 rdf:type schema:PropertyValue
    38 N4d2acf09113441028d16a02e0ac5608c rdf:first sg:person.0740011675.76
    39 rdf:rest Ndc54286da01c49548029b45c1ab1fe07
    40 N52bf706305f5417db939bfede6416e8d schema:name doi
    41 schema:value 10.1186/1758-2946-2-s1-p6
    42 rdf:type schema:PropertyValue
    43 N82f6d956c7204ddcbe8f81b50d8a8d9a schema:name dimensions_id
    44 schema:value pub.1017778070
    45 rdf:type schema:PropertyValue
    46 Nb3b950d1bb99496bad35361602b0fd49 schema:name Springer Nature - SN SciGraph project
    47 rdf:type schema:Organization
    48 Nb7814425ac0b4284919ba88c104bfab8 rdf:first sg:person.012610137527.56
    49 rdf:rest rdf:nil
    50 Ndc54286da01c49548029b45c1ab1fe07 rdf:first sg:person.01037163716.02
    51 rdf:rest N1a862c8e227941f7b7acac31c2325752
    52 Ne159c64a6e584865bfeb403c92854d45 rdf:first sg:person.0606506716.14
    53 rdf:rest Ne2b2926f3b0b466e8565984a274f021f
    54 Ne2b2926f3b0b466e8565984a274f021f rdf:first sg:person.01271744546.41
    55 rdf:rest N1d0db8a5fa0f4d9d9892309e68dc9e53
    56 sg:journal.1042252 schema:issn 1758-2946
    57 schema:name Journal of Cheminformatics
    58 rdf:type schema:Periodical
    59 sg:person.01037163716.02 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    60 schema:familyName Dekker
    61 schema:givenName A
    62 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01037163716.02
    63 rdf:type schema:Person
    64 sg:person.01143472526.54 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    65 schema:familyName Turner
    66 schema:givenName S
    67 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01143472526.54
    68 rdf:type schema:Person
    69 sg:person.01157704762.78 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    70 schema:familyName Ennis
    71 schema:givenName M
    72 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01157704762.78
    73 rdf:type schema:Person
    74 sg:person.012610137527.56 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    75 schema:familyName Steinbeck
    76 schema:givenName Christoph
    77 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012610137527.56
    78 rdf:type schema:Person
    79 sg:person.01271744546.41 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    80 schema:familyName Haug
    81 schema:givenName K
    82 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271744546.41
    83 rdf:type schema:Person
    84 sg:person.0606506716.14 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    85 schema:familyName Hastings
    86 schema:givenName Janna
    87 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0606506716.14
    88 rdf:type schema:Person
    89 sg:person.0740011675.76 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
    90 schema:familyName de Matos
    91 schema:givenName Paula
    92 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740011675.76
    93 rdf:type schema:Person
    94 sg:pub.10.1186/1758-2946-2-s1-p28 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048576812
    95 https://doi.org/10.1186/1758-2946-2-s1-p28
    96 rdf:type schema:CreativeWork
    97 https://doi.org/10.1021/ci025584y schema:sameAs https://app.dimensions.ai/details/publication/pub.1033183422
    98 rdf:type schema:CreativeWork
    99 https://doi.org/10.1093/nar/gkm791 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045387827
    100 rdf:type schema:CreativeWork
    101 https://www.grid.ac/institutes/grid.225360.0 schema:alternateName European Bioinformatics Institute
    102 schema:name European Bioinformatics Institute, Cheminformatics and Metabolism Team, CB10 1SD, Hinxton Cambridge, UK
    103 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...