The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-12

AUTHORS

Michael G Bausher, Nameirakpam D Singh, Seung-Bum Lee, Robert K Jansen, Henry Daniell

ABSTRACT

BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms. RESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales. CONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales. More... »

PAGES

21

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2229-6-21

DOI

http://dx.doi.org/10.1186/1471-2229-6-21

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1053396578

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/17010212


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Ananas", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Citrus sinensis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Chloroplast", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Complementary", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Expressed Sequence Tags", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Gene Order", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genes, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Magnoliopsida", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Open Reading Frames", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Repetitive Sequences, Nucleic Acid", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Agricultural Research Service", 
          "id": "https://www.grid.ac/institutes/grid.463419.d", 
          "name": [
            "USDA-ARS, Horticultural Research Laboratory, 34945\u20133030, Fort Pierce, FL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bausher", 
        "givenName": "Michael G", 
        "id": "sg:person.0741060164.87", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741060164.87"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Central Florida", 
          "id": "https://www.grid.ac/institutes/grid.170430.1", 
          "name": [
            "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Singh", 
        "givenName": "Nameirakpam D", 
        "id": "sg:person.01226555655.14", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01226555655.14"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Central Florida", 
          "id": "https://www.grid.ac/institutes/grid.170430.1", 
          "name": [
            "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lee", 
        "givenName": "Seung-Bum", 
        "id": "sg:person.07702204347.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07702204347.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "The University of Texas at Austin", 
          "id": "https://www.grid.ac/institutes/grid.89336.37", 
          "name": [
            "Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Patterson Laboratories 141, 78712, Austin, TX, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Jansen", 
        "givenName": "Robert K", 
        "id": "sg:person.01074441521.54", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074441521.54"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Central Florida", 
          "id": "https://www.grid.ac/institutes/grid.170430.1", 
          "name": [
            "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Daniell", 
        "givenName": "Henry", 
        "id": "sg:person.01077560777.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077560777.46"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/s11103-005-8882-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000744938", 
          "https://doi.org/10.1007/s11103-005-8882-0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-005-8882-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000744938", 
          "https://doi.org/10.1007/s11103-005-8882-0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-005-8882-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000744938", 
          "https://doi.org/10.1007/s11103-005-8882-0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/30234", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002445123", 
          "https://doi.org/10.1038/30234"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/30234", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002445123", 
          "https://doi.org/10.1038/30234"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0400981101", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002601571"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1095-8339.2000.tb01588.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003507977"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-1-4020-3166-3_16", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1003704496", 
          "https://doi.org/10.1007/978-1-4020-3166-3_16"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-7-61", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004885371", 
          "https://doi.org/10.1186/1471-2164-7-61"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.092136399", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005855907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msi129", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007025783"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.104.057729", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011954564"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-004-0192-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012958676", 
          "https://doi.org/10.1007/s11103-004-0192-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1365-313x.1999.00508.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014861581"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.105.063040", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016274483"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-006-0254-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017741842", 
          "https://doi.org/10.1007/s00122-006-0254-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-006-0254-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017741842", 
          "https://doi.org/10.1007/s00122-006-0254-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.104.050054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019832145"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/bojl.2000.0380", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021225328"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msi191", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021548887"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msi191", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021548887"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1024913304263", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022582626", 
          "https://doi.org/10.1023/a:1024913304263"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.84.24.9054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022917385"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-9452(03)00202-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023136206"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-9452(03)00202-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023136206"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2148-6-32", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025676655", 
          "https://doi.org/10.1186/1471-2148-6-32"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3732/ajb.91.6.997", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025683914"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tplants.2005.03.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028264806"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.13.3.645", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028576397"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msg159", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028763858"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.103.020958", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028898291"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/14.9.817", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029580565"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tibtech.2005.03.008", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030402717"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.2001.4921", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030695106"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3732/ajb.90.12.1758", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032248492"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt0901-870", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033389344", 
          "https://doi.org/10.1038/nbt0901-870"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt0901-870", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033389344", 
          "https://doi.org/10.1038/nbt0901-870"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.vaccine.2004.11.004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033612769"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.50.4.725", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033932144"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.96.5.1840", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034531916"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/83559", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035185174", 
          "https://doi.org/10.1038/83559"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/83559", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035185174", 
          "https://doi.org/10.1038/83559"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1022100404542", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036616219", 
          "https://doi.org/10.1023/a:1022100404542"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-005-7704-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037412280", 
          "https://doi.org/10.1007/s11103-005-7704-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026137", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037680167"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2148-4-35", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038696808", 
          "https://doi.org/10.1186/1471-2148-4-35"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s1360-1385(01)02193-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040540077"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.010233", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040919241"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-004-2907-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042569716", 
          "https://doi.org/10.1007/s11103-004-2907-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/07352680590935387", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042652821"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/07352680590935387", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042652821"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1022114427971", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043663629", 
          "https://doi.org/10.1023/a:1022114427971"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0076-6879(05)95020-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044300243"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3732/ajb.89.11.1809", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044599708"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/29.22.4633", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046065243"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msi173", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046141928"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.plantsci.2005.01.023", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046935176"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tplants.2005.03.007", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047948812"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bth352", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1050086076"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tplants.2004.08.008", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051166556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.104.045187", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051438324"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02173220", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051808271", 
          "https://doi.org/10.1007/bf02173220"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02173220", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051808271", 
          "https://doi.org/10.1007/bf02173220"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt0498-345", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053082515", 
          "https://doi.org/10.1038/nbt0498-345"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/106351501750435086", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058369200"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/10635150290102339", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058369285"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/106351598260987", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058369875"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/106351598261003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058369877"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/431800", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058717242"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/sysbio/49.2.306", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060048348"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.286.5441.947", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062567133"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/2408678", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069917669"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/25065680", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069952613"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/25065680", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069952613"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/25065680", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1069952613"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/2656749", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070048547"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.2307/3871412", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1070469195"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/j.1460-2075.1991.tb07859.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1077836709"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1079/9780851999043.0045", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1089218526"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2006-12", 
    "datePublishedReg": "2006-12-01", 
    "description": "BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms.\nRESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales.\nCONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/1471-2229-6-21", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.3020956", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1024638", 
        "issn": [
          "1471-2229"
        ], 
        "name": "BMC Plant Biology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "6"
      }
    ], 
    "name": "The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms", 
    "pagination": "21", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "fe55a725e69f04fee03ad1d2cd1cf1524e0c4f4c29d2d3f04324172fb5e0a8bf"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "17010212"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100967807"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/1471-2229-6-21"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1053396578"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/1471-2229-6-21", 
      "https://app.dimensions.ai/details/publication/pub.1053396578"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T18:27", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8675_00000551.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2F1471-2229-6-21"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'


 

This table displays all metadata directly associated to this object as RDF triples.

370 TRIPLES      21 PREDICATES      108 URIs      33 LITERALS      21 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/1471-2229-6-21 schema:about N0ae5887a29fb4516b2c545cb1f95159d
2 N11894c23105540e684242ddaa768f5f7
3 N1beb7c593b664a46bb09e318d6649062
4 N1dd8700ebe7e4a8094f2e9262939462b
5 N1fc86bed30c8498780c4f6fac82e9ca2
6 N565ce9ab705845d49c4a50c62ebf748c
7 N75723c0d7bfc4abd9ce01b6df72d75d9
8 N99549ec3dddf446194f78aabc3462ebf
9 N99e89521df674872a4e1ef543a19d46f
10 Na5a48a1ab29143b59970c3fc4baa3377
11 Ne4fe4ecdd9554802b7006e450a77352e
12 Ne9f75cc2e4ec49c29dff0b2f3d846fef
13 anzsrc-for:06
14 anzsrc-for:0604
15 schema:author Ncb5e0ba080c54cb7be28af3b762ffa4b
16 schema:citation sg:pub.10.1007/978-1-4020-3166-3_16
17 sg:pub.10.1007/bf02173220
18 sg:pub.10.1007/s00122-006-0254-x
19 sg:pub.10.1007/s11103-004-0192-4
20 sg:pub.10.1007/s11103-004-2907-y
21 sg:pub.10.1007/s11103-005-7704-8
22 sg:pub.10.1007/s11103-005-8882-0
23 sg:pub.10.1023/a:1022100404542
24 sg:pub.10.1023/a:1022114427971
25 sg:pub.10.1023/a:1024913304263
26 sg:pub.10.1038/30234
27 sg:pub.10.1038/83559
28 sg:pub.10.1038/nbt0498-345
29 sg:pub.10.1038/nbt0901-870
30 sg:pub.10.1186/1471-2148-4-35
31 sg:pub.10.1186/1471-2148-6-32
32 sg:pub.10.1186/1471-2164-7-61
33 https://doi.org/10.1002/j.1460-2075.1991.tb07859.x
34 https://doi.org/10.1006/bojl.2000.0380
35 https://doi.org/10.1006/jmbi.2001.4921
36 https://doi.org/10.1016/j.plantsci.2005.01.023
37 https://doi.org/10.1016/j.tibtech.2005.03.008
38 https://doi.org/10.1016/j.tplants.2004.08.008
39 https://doi.org/10.1016/j.tplants.2005.03.006
40 https://doi.org/10.1016/j.tplants.2005.03.007
41 https://doi.org/10.1016/j.vaccine.2004.11.004
42 https://doi.org/10.1016/s0076-6879(05)95020-9
43 https://doi.org/10.1016/s0168-9452(03)00202-4
44 https://doi.org/10.1016/s1360-1385(01)02193-8
45 https://doi.org/10.1046/j.1365-313x.1999.00508.x
46 https://doi.org/10.1073/pnas.0400981101
47 https://doi.org/10.1073/pnas.092136399
48 https://doi.org/10.1073/pnas.50.4.725
49 https://doi.org/10.1073/pnas.84.24.9054
50 https://doi.org/10.1073/pnas.96.5.1840
51 https://doi.org/10.1079/9780851999043.0045
52 https://doi.org/10.1080/07352680590935387
53 https://doi.org/10.1080/106351501750435086
54 https://doi.org/10.1080/10635150290102339
55 https://doi.org/10.1080/106351598260987
56 https://doi.org/10.1080/106351598261003
57 https://doi.org/10.1086/431800
58 https://doi.org/10.1093/bioinformatics/14.9.817
59 https://doi.org/10.1093/bioinformatics/bth352
60 https://doi.org/10.1093/molbev/msg159
61 https://doi.org/10.1093/molbev/msi129
62 https://doi.org/10.1093/molbev/msi173
63 https://doi.org/10.1093/molbev/msi191
64 https://doi.org/10.1093/nar/29.22.4633
65 https://doi.org/10.1093/oxfordjournals.molbev.a026137
66 https://doi.org/10.1093/sysbio/49.2.306
67 https://doi.org/10.1104/pp.010233
68 https://doi.org/10.1104/pp.103.020958
69 https://doi.org/10.1104/pp.104.045187
70 https://doi.org/10.1104/pp.104.050054
71 https://doi.org/10.1104/pp.104.057729
72 https://doi.org/10.1104/pp.105.063040
73 https://doi.org/10.1105/tpc.13.3.645
74 https://doi.org/10.1111/j.1095-8339.2000.tb01588.x
75 https://doi.org/10.1126/science.286.5441.947
76 https://doi.org/10.2307/2408678
77 https://doi.org/10.2307/25065680
78 https://doi.org/10.2307/2656749
79 https://doi.org/10.2307/3871412
80 https://doi.org/10.3732/ajb.89.11.1809
81 https://doi.org/10.3732/ajb.90.12.1758
82 https://doi.org/10.3732/ajb.91.6.997
83 schema:datePublished 2006-12
84 schema:datePublishedReg 2006-12-01
85 schema:description BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms. RESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales. CONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales.
86 schema:genre research_article
87 schema:inLanguage en
88 schema:isAccessibleForFree true
89 schema:isPartOf N02aa1293b0a14bc08e7312b91f8bd6f1
90 N4e65c5dd22b843c4af094901e7d487f2
91 sg:journal.1024638
92 schema:name The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
93 schema:pagination 21
94 schema:productId N1d2ccf2e4b7244ee92586447442316f9
95 N67956965d60246b299f812a7e6522f52
96 N7cc16abe988d4132872da23b04bbea1b
97 Nf0a3f6fb6fc94fd7a19d3a5990e4c2ce
98 Nf641c5752cfc4e70918f1ed67c1708f2
99 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053396578
100 https://doi.org/10.1186/1471-2229-6-21
101 schema:sdDatePublished 2019-04-10T18:27
102 schema:sdLicense https://scigraph.springernature.com/explorer/license/
103 schema:sdPublisher N5435dc8318894052a9996a2fc3c45e83
104 schema:url http://link.springer.com/10.1186%2F1471-2229-6-21
105 sgo:license sg:explorer/license/
106 sgo:sdDataset articles
107 rdf:type schema:ScholarlyArticle
108 N02aa1293b0a14bc08e7312b91f8bd6f1 schema:volumeNumber 6
109 rdf:type schema:PublicationVolume
110 N0ae5887a29fb4516b2c545cb1f95159d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
111 schema:name DNA, Chloroplast
112 rdf:type schema:DefinedTerm
113 N11894c23105540e684242ddaa768f5f7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
114 schema:name Genes, Plant
115 rdf:type schema:DefinedTerm
116 N1beb7c593b664a46bb09e318d6649062 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
117 schema:name Expressed Sequence Tags
118 rdf:type schema:DefinedTerm
119 N1d2ccf2e4b7244ee92586447442316f9 schema:name dimensions_id
120 schema:value pub.1053396578
121 rdf:type schema:PropertyValue
122 N1dd8700ebe7e4a8094f2e9262939462b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
123 schema:name Phylogeny
124 rdf:type schema:DefinedTerm
125 N1fc86bed30c8498780c4f6fac82e9ca2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
126 schema:name Ananas
127 rdf:type schema:DefinedTerm
128 N41db341c607f40f19eff462546b3732f rdf:first sg:person.01226555655.14
129 rdf:rest N4ee843151dbf4678bf09e4ac4473109a
130 N4e65c5dd22b843c4af094901e7d487f2 schema:issueNumber 1
131 rdf:type schema:PublicationIssue
132 N4ee843151dbf4678bf09e4ac4473109a rdf:first sg:person.07702204347.51
133 rdf:rest Nd5af729e8d9a4b028adbbdb2ed4fb791
134 N5435dc8318894052a9996a2fc3c45e83 schema:name Springer Nature - SN SciGraph project
135 rdf:type schema:Organization
136 N565ce9ab705845d49c4a50c62ebf748c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
137 schema:name Repetitive Sequences, Nucleic Acid
138 rdf:type schema:DefinedTerm
139 N67956965d60246b299f812a7e6522f52 schema:name pubmed_id
140 schema:value 17010212
141 rdf:type schema:PropertyValue
142 N73eb89633790405d8cd6b6f02408b0f4 rdf:first sg:person.01077560777.46
143 rdf:rest rdf:nil
144 N75723c0d7bfc4abd9ce01b6df72d75d9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
145 schema:name Citrus sinensis
146 rdf:type schema:DefinedTerm
147 N7cc16abe988d4132872da23b04bbea1b schema:name doi
148 schema:value 10.1186/1471-2229-6-21
149 rdf:type schema:PropertyValue
150 N99549ec3dddf446194f78aabc3462ebf schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
151 schema:name Magnoliopsida
152 rdf:type schema:DefinedTerm
153 N99e89521df674872a4e1ef543a19d46f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
154 schema:name Gene Order
155 rdf:type schema:DefinedTerm
156 Na5a48a1ab29143b59970c3fc4baa3377 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
157 schema:name DNA, Complementary
158 rdf:type schema:DefinedTerm
159 Ncb5e0ba080c54cb7be28af3b762ffa4b rdf:first sg:person.0741060164.87
160 rdf:rest N41db341c607f40f19eff462546b3732f
161 Nd5af729e8d9a4b028adbbdb2ed4fb791 rdf:first sg:person.01074441521.54
162 rdf:rest N73eb89633790405d8cd6b6f02408b0f4
163 Ne4fe4ecdd9554802b7006e450a77352e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
164 schema:name Genome, Plant
165 rdf:type schema:DefinedTerm
166 Ne9f75cc2e4ec49c29dff0b2f3d846fef schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
167 schema:name Open Reading Frames
168 rdf:type schema:DefinedTerm
169 Nf0a3f6fb6fc94fd7a19d3a5990e4c2ce schema:name nlm_unique_id
170 schema:value 100967807
171 rdf:type schema:PropertyValue
172 Nf641c5752cfc4e70918f1ed67c1708f2 schema:name readcube_id
173 schema:value fe55a725e69f04fee03ad1d2cd1cf1524e0c4f4c29d2d3f04324172fb5e0a8bf
174 rdf:type schema:PropertyValue
175 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
176 schema:name Biological Sciences
177 rdf:type schema:DefinedTerm
178 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
179 schema:name Genetics
180 rdf:type schema:DefinedTerm
181 sg:grant.3020956 http://pending.schema.org/fundedItem sg:pub.10.1186/1471-2229-6-21
182 rdf:type schema:MonetaryGrant
183 sg:journal.1024638 schema:issn 1471-2229
184 schema:name BMC Plant Biology
185 rdf:type schema:Periodical
186 sg:person.01074441521.54 schema:affiliation https://www.grid.ac/institutes/grid.89336.37
187 schema:familyName Jansen
188 schema:givenName Robert K
189 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074441521.54
190 rdf:type schema:Person
191 sg:person.01077560777.46 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
192 schema:familyName Daniell
193 schema:givenName Henry
194 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077560777.46
195 rdf:type schema:Person
196 sg:person.01226555655.14 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
197 schema:familyName Singh
198 schema:givenName Nameirakpam D
199 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01226555655.14
200 rdf:type schema:Person
201 sg:person.0741060164.87 schema:affiliation https://www.grid.ac/institutes/grid.463419.d
202 schema:familyName Bausher
203 schema:givenName Michael G
204 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741060164.87
205 rdf:type schema:Person
206 sg:person.07702204347.51 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
207 schema:familyName Lee
208 schema:givenName Seung-Bum
209 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07702204347.51
210 rdf:type schema:Person
211 sg:pub.10.1007/978-1-4020-3166-3_16 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003704496
212 https://doi.org/10.1007/978-1-4020-3166-3_16
213 rdf:type schema:CreativeWork
214 sg:pub.10.1007/bf02173220 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051808271
215 https://doi.org/10.1007/bf02173220
216 rdf:type schema:CreativeWork
217 sg:pub.10.1007/s00122-006-0254-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1017741842
218 https://doi.org/10.1007/s00122-006-0254-x
219 rdf:type schema:CreativeWork
220 sg:pub.10.1007/s11103-004-0192-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012958676
221 https://doi.org/10.1007/s11103-004-0192-4
222 rdf:type schema:CreativeWork
223 sg:pub.10.1007/s11103-004-2907-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1042569716
224 https://doi.org/10.1007/s11103-004-2907-y
225 rdf:type schema:CreativeWork
226 sg:pub.10.1007/s11103-005-7704-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037412280
227 https://doi.org/10.1007/s11103-005-7704-8
228 rdf:type schema:CreativeWork
229 sg:pub.10.1007/s11103-005-8882-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000744938
230 https://doi.org/10.1007/s11103-005-8882-0
231 rdf:type schema:CreativeWork
232 sg:pub.10.1023/a:1022100404542 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036616219
233 https://doi.org/10.1023/a:1022100404542
234 rdf:type schema:CreativeWork
235 sg:pub.10.1023/a:1022114427971 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043663629
236 https://doi.org/10.1023/a:1022114427971
237 rdf:type schema:CreativeWork
238 sg:pub.10.1023/a:1024913304263 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022582626
239 https://doi.org/10.1023/a:1024913304263
240 rdf:type schema:CreativeWork
241 sg:pub.10.1038/30234 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002445123
242 https://doi.org/10.1038/30234
243 rdf:type schema:CreativeWork
244 sg:pub.10.1038/83559 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035185174
245 https://doi.org/10.1038/83559
246 rdf:type schema:CreativeWork
247 sg:pub.10.1038/nbt0498-345 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053082515
248 https://doi.org/10.1038/nbt0498-345
249 rdf:type schema:CreativeWork
250 sg:pub.10.1038/nbt0901-870 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033389344
251 https://doi.org/10.1038/nbt0901-870
252 rdf:type schema:CreativeWork
253 sg:pub.10.1186/1471-2148-4-35 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038696808
254 https://doi.org/10.1186/1471-2148-4-35
255 rdf:type schema:CreativeWork
256 sg:pub.10.1186/1471-2148-6-32 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025676655
257 https://doi.org/10.1186/1471-2148-6-32
258 rdf:type schema:CreativeWork
259 sg:pub.10.1186/1471-2164-7-61 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004885371
260 https://doi.org/10.1186/1471-2164-7-61
261 rdf:type schema:CreativeWork
262 https://doi.org/10.1002/j.1460-2075.1991.tb07859.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1077836709
263 rdf:type schema:CreativeWork
264 https://doi.org/10.1006/bojl.2000.0380 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021225328
265 rdf:type schema:CreativeWork
266 https://doi.org/10.1006/jmbi.2001.4921 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030695106
267 rdf:type schema:CreativeWork
268 https://doi.org/10.1016/j.plantsci.2005.01.023 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046935176
269 rdf:type schema:CreativeWork
270 https://doi.org/10.1016/j.tibtech.2005.03.008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030402717
271 rdf:type schema:CreativeWork
272 https://doi.org/10.1016/j.tplants.2004.08.008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051166556
273 rdf:type schema:CreativeWork
274 https://doi.org/10.1016/j.tplants.2005.03.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028264806
275 rdf:type schema:CreativeWork
276 https://doi.org/10.1016/j.tplants.2005.03.007 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047948812
277 rdf:type schema:CreativeWork
278 https://doi.org/10.1016/j.vaccine.2004.11.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033612769
279 rdf:type schema:CreativeWork
280 https://doi.org/10.1016/s0076-6879(05)95020-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044300243
281 rdf:type schema:CreativeWork
282 https://doi.org/10.1016/s0168-9452(03)00202-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023136206
283 rdf:type schema:CreativeWork
284 https://doi.org/10.1016/s1360-1385(01)02193-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040540077
285 rdf:type schema:CreativeWork
286 https://doi.org/10.1046/j.1365-313x.1999.00508.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1014861581
287 rdf:type schema:CreativeWork
288 https://doi.org/10.1073/pnas.0400981101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002601571
289 rdf:type schema:CreativeWork
290 https://doi.org/10.1073/pnas.092136399 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005855907
291 rdf:type schema:CreativeWork
292 https://doi.org/10.1073/pnas.50.4.725 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033932144
293 rdf:type schema:CreativeWork
294 https://doi.org/10.1073/pnas.84.24.9054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022917385
295 rdf:type schema:CreativeWork
296 https://doi.org/10.1073/pnas.96.5.1840 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034531916
297 rdf:type schema:CreativeWork
298 https://doi.org/10.1079/9780851999043.0045 schema:sameAs https://app.dimensions.ai/details/publication/pub.1089218526
299 rdf:type schema:CreativeWork
300 https://doi.org/10.1080/07352680590935387 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042652821
301 rdf:type schema:CreativeWork
302 https://doi.org/10.1080/106351501750435086 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369200
303 rdf:type schema:CreativeWork
304 https://doi.org/10.1080/10635150290102339 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369285
305 rdf:type schema:CreativeWork
306 https://doi.org/10.1080/106351598260987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369875
307 rdf:type schema:CreativeWork
308 https://doi.org/10.1080/106351598261003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369877
309 rdf:type schema:CreativeWork
310 https://doi.org/10.1086/431800 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058717242
311 rdf:type schema:CreativeWork
312 https://doi.org/10.1093/bioinformatics/14.9.817 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029580565
313 rdf:type schema:CreativeWork
314 https://doi.org/10.1093/bioinformatics/bth352 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050086076
315 rdf:type schema:CreativeWork
316 https://doi.org/10.1093/molbev/msg159 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028763858
317 rdf:type schema:CreativeWork
318 https://doi.org/10.1093/molbev/msi129 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007025783
319 rdf:type schema:CreativeWork
320 https://doi.org/10.1093/molbev/msi173 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046141928
321 rdf:type schema:CreativeWork
322 https://doi.org/10.1093/molbev/msi191 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021548887
323 rdf:type schema:CreativeWork
324 https://doi.org/10.1093/nar/29.22.4633 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046065243
325 rdf:type schema:CreativeWork
326 https://doi.org/10.1093/oxfordjournals.molbev.a026137 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037680167
327 rdf:type schema:CreativeWork
328 https://doi.org/10.1093/sysbio/49.2.306 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060048348
329 rdf:type schema:CreativeWork
330 https://doi.org/10.1104/pp.010233 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040919241
331 rdf:type schema:CreativeWork
332 https://doi.org/10.1104/pp.103.020958 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028898291
333 rdf:type schema:CreativeWork
334 https://doi.org/10.1104/pp.104.045187 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051438324
335 rdf:type schema:CreativeWork
336 https://doi.org/10.1104/pp.104.050054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019832145
337 rdf:type schema:CreativeWork
338 https://doi.org/10.1104/pp.104.057729 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011954564
339 rdf:type schema:CreativeWork
340 https://doi.org/10.1104/pp.105.063040 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016274483
341 rdf:type schema:CreativeWork
342 https://doi.org/10.1105/tpc.13.3.645 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028576397
343 rdf:type schema:CreativeWork
344 https://doi.org/10.1111/j.1095-8339.2000.tb01588.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1003507977
345 rdf:type schema:CreativeWork
346 https://doi.org/10.1126/science.286.5441.947 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062567133
347 rdf:type schema:CreativeWork
348 https://doi.org/10.2307/2408678 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069917669
349 rdf:type schema:CreativeWork
350 https://doi.org/10.2307/25065680 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069952613
351 rdf:type schema:CreativeWork
352 https://doi.org/10.2307/2656749 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070048547
353 rdf:type schema:CreativeWork
354 https://doi.org/10.2307/3871412 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070469195
355 rdf:type schema:CreativeWork
356 https://doi.org/10.3732/ajb.89.11.1809 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044599708
357 rdf:type schema:CreativeWork
358 https://doi.org/10.3732/ajb.90.12.1758 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032248492
359 rdf:type schema:CreativeWork
360 https://doi.org/10.3732/ajb.91.6.997 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025683914
361 rdf:type schema:CreativeWork
362 https://www.grid.ac/institutes/grid.170430.1 schema:alternateName University of Central Florida
363 schema:name Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816–2364, Orlando, FL, USA
364 rdf:type schema:Organization
365 https://www.grid.ac/institutes/grid.463419.d schema:alternateName Agricultural Research Service
366 schema:name USDA-ARS, Horticultural Research Laboratory, 34945–3030, Fort Pierce, FL, USA
367 rdf:type schema:Organization
368 https://www.grid.ac/institutes/grid.89336.37 schema:alternateName The University of Texas at Austin
369 schema:name Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Patterson Laboratories 141, 78712, Austin, TX, USA
370 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...