The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-12

AUTHORS

Michael G Bausher, Nameirakpam D Singh, Seung-Bum Lee, Robert K Jansen, Henry Daniell

ABSTRACT

BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms. RESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales. CONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales. More... »

PAGES

21

References to SciGraph publications

  • 2004. Chloroplast Genetic Engineering in MOLECULAR BIOLOGY AND BIOTECHNOLOGY OF PLANT ORGANELLES
  • 2006-05. Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes in THEORETICAL AND APPLIED GENETICS
  • 2001-09. Stable genetic transformation of tomato plastids and expression of a foreign protein in fruit in NATURE BIOTECHNOLOGY
  • 1998-04. Containment of herbicide resistance through genetic engineering of the chloroplast genome in NATURE BIOTECHNOLOGY
  • 2004-09. Stable transformation of the cotton plastid genome and maternal inheritance of transgenes in PLANT MOLECULAR BIOLOGY
  • 2004-07. Generation of fertile transplastomic soybean in PLANT MOLECULAR BIOLOGY
  • 2004-12. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? in BMC EVOLUTIONARY BIOLOGY
  • 1998-05. Gene transfer to the nucleus and the evolution of chloroplasts in NATURE
  • 2003-04. History of chloroplast genomics in PHOTOSYNTHESIS RESEARCH
  • 2003-01. Chloroplast expression of His-tagged GUS-fusions: a general strategy to overproduce and purify foreign proteins using transplastomic plants as bioreactors in MOLECULAR BREEDING
  • 2005-08. Stable Plastid Transformation in Lettuce (Lactuca sativa L.) in PLANT MOLECULAR BIOLOGY
  • 2005-09. Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes in PLANT MOLECULAR BIOLOGY
  • 2001-01. Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals in NATURE BIOTECHNOLOGY
  • 1996-08. Ebb and flow of the chloroplast inverted repeat in MOLECULAR GENETICS AND GENOMICS
  • 2006-12. Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids in BMC EVOLUTIONARY BIOLOGY
  • 2006-12. The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms in BMC GENOMICS
  • 2003-01. Accumulation of trehalose within transgenic chloroplasts confers drought tolerance in MOLECULAR BREEDING
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2229-6-21

    DOI

    http://dx.doi.org/10.1186/1471-2229-6-21

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1053396578

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/17010212


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Ananas", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Citrus sinensis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "DNA, Chloroplast", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "DNA, Complementary", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Expressed Sequence Tags", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Gene Order", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genes, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Magnoliopsida", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Open Reading Frames", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Repetitive Sequences, Nucleic Acid", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Agricultural Research Service", 
              "id": "https://www.grid.ac/institutes/grid.463419.d", 
              "name": [
                "USDA-ARS, Horticultural Research Laboratory, 34945\u20133030, Fort Pierce, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bausher", 
            "givenName": "Michael G", 
            "id": "sg:person.0741060164.87", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741060164.87"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Central Florida", 
              "id": "https://www.grid.ac/institutes/grid.170430.1", 
              "name": [
                "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Singh", 
            "givenName": "Nameirakpam D", 
            "id": "sg:person.01226555655.14", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01226555655.14"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Central Florida", 
              "id": "https://www.grid.ac/institutes/grid.170430.1", 
              "name": [
                "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Lee", 
            "givenName": "Seung-Bum", 
            "id": "sg:person.07702204347.51", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07702204347.51"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "The University of Texas at Austin", 
              "id": "https://www.grid.ac/institutes/grid.89336.37", 
              "name": [
                "Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Patterson Laboratories 141, 78712, Austin, TX, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Jansen", 
            "givenName": "Robert K", 
            "id": "sg:person.01074441521.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074441521.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of Central Florida", 
              "id": "https://www.grid.ac/institutes/grid.170430.1", 
              "name": [
                "Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816\u20132364, Orlando, FL, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Daniell", 
            "givenName": "Henry", 
            "id": "sg:person.01077560777.46", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077560777.46"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1007/s11103-005-8882-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000744938", 
              "https://doi.org/10.1007/s11103-005-8882-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-005-8882-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000744938", 
              "https://doi.org/10.1007/s11103-005-8882-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-005-8882-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000744938", 
              "https://doi.org/10.1007/s11103-005-8882-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/30234", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002445123", 
              "https://doi.org/10.1038/30234"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/30234", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002445123", 
              "https://doi.org/10.1038/30234"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0400981101", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002601571"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1095-8339.2000.tb01588.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003507977"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-1-4020-3166-3_16", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003704496", 
              "https://doi.org/10.1007/978-1-4020-3166-3_16"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-7-61", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004885371", 
              "https://doi.org/10.1186/1471-2164-7-61"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.092136399", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005855907"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi129", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007025783"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.104.057729", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011954564"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-004-0192-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012958676", 
              "https://doi.org/10.1007/s11103-004-0192-4"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-313x.1999.00508.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014861581"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.105.063040", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016274483"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0254-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017741842", 
              "https://doi.org/10.1007/s00122-006-0254-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-006-0254-x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017741842", 
              "https://doi.org/10.1007/s00122-006-0254-x"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.104.050054", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019832145"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/bojl.2000.0380", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021225328"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi191", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021548887"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi191", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021548887"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1024913304263", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022582626", 
              "https://doi.org/10.1023/a:1024913304263"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.84.24.9054", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022917385"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0168-9452(03)00202-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023136206"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0168-9452(03)00202-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023136206"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2148-6-32", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025676655", 
              "https://doi.org/10.1186/1471-2148-6-32"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3732/ajb.91.6.997", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025683914"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tplants.2005.03.006", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028264806"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1105/tpc.13.3.645", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028576397"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msg159", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028763858"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.103.020958", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028898291"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/14.9.817", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029580565"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tibtech.2005.03.008", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030402717"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1006/jmbi.2001.4921", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030695106"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3732/ajb.90.12.1758", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032248492"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt0901-870", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033389344", 
              "https://doi.org/10.1038/nbt0901-870"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt0901-870", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033389344", 
              "https://doi.org/10.1038/nbt0901-870"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.vaccine.2004.11.004", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033612769"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.50.4.725", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033932144"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.96.5.1840", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034531916"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/83559", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035185174", 
              "https://doi.org/10.1038/83559"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/83559", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035185174", 
              "https://doi.org/10.1038/83559"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1022100404542", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036616219", 
              "https://doi.org/10.1023/a:1022100404542"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-005-7704-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037412280", 
              "https://doi.org/10.1007/s11103-005-7704-8"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026137", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037680167"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2148-4-35", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038696808", 
              "https://doi.org/10.1186/1471-2148-4-35"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s1360-1385(01)02193-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040540077"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.010233", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040919241"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s11103-004-2907-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042569716", 
              "https://doi.org/10.1007/s11103-004-2907-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/07352680590935387", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042652821"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/07352680590935387", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042652821"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1022114427971", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043663629", 
              "https://doi.org/10.1023/a:1022114427971"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0076-6879(05)95020-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044300243"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.3732/ajb.89.11.1809", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044599708"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/29.22.4633", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046065243"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi173", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046141928"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.plantsci.2005.01.023", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046935176"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tplants.2005.03.007", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047948812"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bth352", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050086076"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tplants.2004.08.008", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051166556"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.104.045187", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051438324"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02173220", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051808271", 
              "https://doi.org/10.1007/bf02173220"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02173220", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051808271", 
              "https://doi.org/10.1007/bf02173220"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt0498-345", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053082515", 
              "https://doi.org/10.1038/nbt0498-345"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/106351501750435086", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058369200"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/10635150290102339", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058369285"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/106351598260987", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058369875"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/106351598261003", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058369877"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1086/431800", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058717242"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/sysbio/49.2.306", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060048348"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.286.5441.947", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062567133"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2408678", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069917669"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/25065680", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069952613"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/25065680", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069952613"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/25065680", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1069952613"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/2656749", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1070048547"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2307/3871412", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1070469195"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/j.1460-2075.1991.tb07859.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1077836709"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1079/9780851999043.0045", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1089218526"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2006-12", 
        "datePublishedReg": "2006-12-01", 
        "description": "BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms.\nRESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales.\nCONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/1471-2229-6-21", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.3020956", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1024638", 
            "issn": [
              "1471-2229"
            ], 
            "name": "BMC Plant Biology", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "6"
          }
        ], 
        "name": "The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms", 
        "pagination": "21", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "fe55a725e69f04fee03ad1d2cd1cf1524e0c4f4c29d2d3f04324172fb5e0a8bf"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "17010212"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "100967807"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/1471-2229-6-21"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1053396578"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/1471-2229-6-21", 
          "https://app.dimensions.ai/details/publication/pub.1053396578"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T18:27", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8675_00000551.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2F1471-2229-6-21"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-6-21'


     

    This table displays all metadata directly associated to this object as RDF triples.

    370 TRIPLES      21 PREDICATES      108 URIs      33 LITERALS      21 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/1471-2229-6-21 schema:about N1337ba3f270d44f0943908df9f251204
    2 N1bfd7de00cb94db8a9935388c84fc2e8
    3 N38f997978c7249e9bcc99d8ad5094123
    4 N408366a1b80740efaac125b983480de5
    5 N5aa5a02479fa40fbb382d4e816b554a2
    6 N6e68ba65163447e29f4d11a9c9ef1085
    7 N7b0de5131aa449369e394842ac901e6f
    8 N97616d95327c45b5a46cc5a4a82c2879
    9 Na6e608c9967e426083bed70f7fbea866
    10 Nb5d7c28d939e46bfbdd81b741b754e16
    11 Nf2c5f4ef988b4ed1893522ae7c5ce4a9
    12 Nf85ab81544cd472aa0449c05a3866ba5
    13 anzsrc-for:06
    14 anzsrc-for:0604
    15 schema:author Nd3e4bfe708f84a07a3d83b26697eaaed
    16 schema:citation sg:pub.10.1007/978-1-4020-3166-3_16
    17 sg:pub.10.1007/bf02173220
    18 sg:pub.10.1007/s00122-006-0254-x
    19 sg:pub.10.1007/s11103-004-0192-4
    20 sg:pub.10.1007/s11103-004-2907-y
    21 sg:pub.10.1007/s11103-005-7704-8
    22 sg:pub.10.1007/s11103-005-8882-0
    23 sg:pub.10.1023/a:1022100404542
    24 sg:pub.10.1023/a:1022114427971
    25 sg:pub.10.1023/a:1024913304263
    26 sg:pub.10.1038/30234
    27 sg:pub.10.1038/83559
    28 sg:pub.10.1038/nbt0498-345
    29 sg:pub.10.1038/nbt0901-870
    30 sg:pub.10.1186/1471-2148-4-35
    31 sg:pub.10.1186/1471-2148-6-32
    32 sg:pub.10.1186/1471-2164-7-61
    33 https://doi.org/10.1002/j.1460-2075.1991.tb07859.x
    34 https://doi.org/10.1006/bojl.2000.0380
    35 https://doi.org/10.1006/jmbi.2001.4921
    36 https://doi.org/10.1016/j.plantsci.2005.01.023
    37 https://doi.org/10.1016/j.tibtech.2005.03.008
    38 https://doi.org/10.1016/j.tplants.2004.08.008
    39 https://doi.org/10.1016/j.tplants.2005.03.006
    40 https://doi.org/10.1016/j.tplants.2005.03.007
    41 https://doi.org/10.1016/j.vaccine.2004.11.004
    42 https://doi.org/10.1016/s0076-6879(05)95020-9
    43 https://doi.org/10.1016/s0168-9452(03)00202-4
    44 https://doi.org/10.1016/s1360-1385(01)02193-8
    45 https://doi.org/10.1046/j.1365-313x.1999.00508.x
    46 https://doi.org/10.1073/pnas.0400981101
    47 https://doi.org/10.1073/pnas.092136399
    48 https://doi.org/10.1073/pnas.50.4.725
    49 https://doi.org/10.1073/pnas.84.24.9054
    50 https://doi.org/10.1073/pnas.96.5.1840
    51 https://doi.org/10.1079/9780851999043.0045
    52 https://doi.org/10.1080/07352680590935387
    53 https://doi.org/10.1080/106351501750435086
    54 https://doi.org/10.1080/10635150290102339
    55 https://doi.org/10.1080/106351598260987
    56 https://doi.org/10.1080/106351598261003
    57 https://doi.org/10.1086/431800
    58 https://doi.org/10.1093/bioinformatics/14.9.817
    59 https://doi.org/10.1093/bioinformatics/bth352
    60 https://doi.org/10.1093/molbev/msg159
    61 https://doi.org/10.1093/molbev/msi129
    62 https://doi.org/10.1093/molbev/msi173
    63 https://doi.org/10.1093/molbev/msi191
    64 https://doi.org/10.1093/nar/29.22.4633
    65 https://doi.org/10.1093/oxfordjournals.molbev.a026137
    66 https://doi.org/10.1093/sysbio/49.2.306
    67 https://doi.org/10.1104/pp.010233
    68 https://doi.org/10.1104/pp.103.020958
    69 https://doi.org/10.1104/pp.104.045187
    70 https://doi.org/10.1104/pp.104.050054
    71 https://doi.org/10.1104/pp.104.057729
    72 https://doi.org/10.1104/pp.105.063040
    73 https://doi.org/10.1105/tpc.13.3.645
    74 https://doi.org/10.1111/j.1095-8339.2000.tb01588.x
    75 https://doi.org/10.1126/science.286.5441.947
    76 https://doi.org/10.2307/2408678
    77 https://doi.org/10.2307/25065680
    78 https://doi.org/10.2307/2656749
    79 https://doi.org/10.2307/3871412
    80 https://doi.org/10.3732/ajb.89.11.1809
    81 https://doi.org/10.3732/ajb.90.12.1758
    82 https://doi.org/10.3732/ajb.91.6.997
    83 schema:datePublished 2006-12
    84 schema:datePublishedReg 2006-12-01
    85 schema:description BACKGROUND: The production of Citrus, the largest fruit crop of international economic value, has recently been imperiled due to the introduction of the bacterial disease Citrus canker. No significant improvements have been made to combat this disease by plant breeding and nuclear transgenic approaches. Chloroplast genetic engineering has a number of advantages over nuclear transformation; it not only increases transgene expression but also facilitates transgene containment, which is one of the major impediments for development of transgenic trees. We have sequenced the Citrus chloroplast genome to facilitate genetic improvement of this crop and to assess phylogenetic relationships among major lineages of angiosperms. RESULTS: The complete chloroplast genome sequence of Citrus sinensis is 160,129 bp in length, and contains 133 genes (89 protein-coding, 4 rRNAs and 30 distinct tRNAs). Genome organization is very similar to the inferred ancestral angiosperm chloroplast genome. However, in Citrus the infA gene is absent. The inverted repeat region has expanded to duplicate rps19 and the first 84 amino acids of rpl22. The rpl22 gene in the IRb region has a nonsense mutation resulting in 9 stop codons. This was confirmed by PCR amplification and sequencing using primers that flank the IR/LSC boundaries. Repeat analysis identified 29 direct and inverted repeats 30 bp or longer with a sequence identity > or = 90%. Comparison of protein-coding sequences with expressed sequence tags revealed six putative RNA edits, five of which resulted in non-synonymous modifications in petL, psbH, ycf2 and ndhA. Phylogenetic analyses using maximum parsimony (MP) and maximum likelihood (ML) methods of a dataset composed of 61 protein-coding genes for 30 taxa provide strong support for the monophyly of several major clades of angiosperms, including monocots, eudicots, rosids and asterids. The MP and ML trees are incongruent in three areas: the position of Amborella and Nymphaeales, relationship of the magnoliid genus Calycanthus, and the monophyly of the eurosid I clade. Both MP and ML trees provide strong support for the monophyly of eurosids II and for the placement of Citrus (Sapindales) sister to a clade including the Malvales/Brassicales. CONCLUSION: This is the first complete chloroplast genome sequence for a member of the Rutaceae and Sapindales. Expansion of the inverted repeat region to include rps19 and part of rpl22 and presence of two truncated copies of rpl22 is unusual among sequenced chloroplast genomes. Availability of a complete Citrus chloroplast genome sequence provides valuable information on intergenic spacer regions and endogenous regulatory sequences for chloroplast genetic engineering. Phylogenetic analyses resolve relationships among several major clades of angiosperms and provide strong support for the monophyly of the eurosid II clade and the position of the Sapindales sister to the Brassicales/Malvales.
    86 schema:genre research_article
    87 schema:inLanguage en
    88 schema:isAccessibleForFree true
    89 schema:isPartOf N0af68a09740640189f7fccef825c3d95
    90 Nafce0a125a9b42218c0784b9e957f97f
    91 sg:journal.1024638
    92 schema:name The complete chloroplast genome sequence of Citrus sinensis(L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
    93 schema:pagination 21
    94 schema:productId N308d043d50dc48868bf02262ceca832c
    95 N373ae39c23764ae881c359394c3eb7e0
    96 N44acb19f40984ef9a4a700da6f8f2351
    97 Nd06a78ba95074fb698191d83935edf5b
    98 Ne24c5e9633884e66a7bffcd3c8a7f975
    99 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053396578
    100 https://doi.org/10.1186/1471-2229-6-21
    101 schema:sdDatePublished 2019-04-10T18:27
    102 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    103 schema:sdPublisher N3f991195981e44068ea05acc303ded33
    104 schema:url http://link.springer.com/10.1186%2F1471-2229-6-21
    105 sgo:license sg:explorer/license/
    106 sgo:sdDataset articles
    107 rdf:type schema:ScholarlyArticle
    108 N0af68a09740640189f7fccef825c3d95 schema:volumeNumber 6
    109 rdf:type schema:PublicationVolume
    110 N1337ba3f270d44f0943908df9f251204 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    111 schema:name DNA, Complementary
    112 rdf:type schema:DefinedTerm
    113 N1bfd7de00cb94db8a9935388c84fc2e8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    114 schema:name Repetitive Sequences, Nucleic Acid
    115 rdf:type schema:DefinedTerm
    116 N308d043d50dc48868bf02262ceca832c schema:name readcube_id
    117 schema:value fe55a725e69f04fee03ad1d2cd1cf1524e0c4f4c29d2d3f04324172fb5e0a8bf
    118 rdf:type schema:PropertyValue
    119 N373ae39c23764ae881c359394c3eb7e0 schema:name doi
    120 schema:value 10.1186/1471-2229-6-21
    121 rdf:type schema:PropertyValue
    122 N38f997978c7249e9bcc99d8ad5094123 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    123 schema:name Open Reading Frames
    124 rdf:type schema:DefinedTerm
    125 N3f991195981e44068ea05acc303ded33 schema:name Springer Nature - SN SciGraph project
    126 rdf:type schema:Organization
    127 N408366a1b80740efaac125b983480de5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    128 schema:name Citrus sinensis
    129 rdf:type schema:DefinedTerm
    130 N44acb19f40984ef9a4a700da6f8f2351 schema:name dimensions_id
    131 schema:value pub.1053396578
    132 rdf:type schema:PropertyValue
    133 N551f90ee9fc448a08ba70f36bc08310b rdf:first sg:person.01226555655.14
    134 rdf:rest N8da9e61ce4184e4b81eef3929e931cca
    135 N5aa5a02479fa40fbb382d4e816b554a2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    136 schema:name Genes, Plant
    137 rdf:type schema:DefinedTerm
    138 N601b01d8332e45679bab19a6b3aaec68 rdf:first sg:person.01077560777.46
    139 rdf:rest rdf:nil
    140 N6e68ba65163447e29f4d11a9c9ef1085 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    141 schema:name Genome, Plant
    142 rdf:type schema:DefinedTerm
    143 N7b0de5131aa449369e394842ac901e6f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    144 schema:name Expressed Sequence Tags
    145 rdf:type schema:DefinedTerm
    146 N8da9e61ce4184e4b81eef3929e931cca rdf:first sg:person.07702204347.51
    147 rdf:rest N92192a0e10254a08a4a5f2373e3134fd
    148 N92192a0e10254a08a4a5f2373e3134fd rdf:first sg:person.01074441521.54
    149 rdf:rest N601b01d8332e45679bab19a6b3aaec68
    150 N97616d95327c45b5a46cc5a4a82c2879 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    151 schema:name Ananas
    152 rdf:type schema:DefinedTerm
    153 Na6e608c9967e426083bed70f7fbea866 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    154 schema:name Gene Order
    155 rdf:type schema:DefinedTerm
    156 Nafce0a125a9b42218c0784b9e957f97f schema:issueNumber 1
    157 rdf:type schema:PublicationIssue
    158 Nb5d7c28d939e46bfbdd81b741b754e16 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    159 schema:name Phylogeny
    160 rdf:type schema:DefinedTerm
    161 Nd06a78ba95074fb698191d83935edf5b schema:name nlm_unique_id
    162 schema:value 100967807
    163 rdf:type schema:PropertyValue
    164 Nd3e4bfe708f84a07a3d83b26697eaaed rdf:first sg:person.0741060164.87
    165 rdf:rest N551f90ee9fc448a08ba70f36bc08310b
    166 Ne24c5e9633884e66a7bffcd3c8a7f975 schema:name pubmed_id
    167 schema:value 17010212
    168 rdf:type schema:PropertyValue
    169 Nf2c5f4ef988b4ed1893522ae7c5ce4a9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    170 schema:name Magnoliopsida
    171 rdf:type schema:DefinedTerm
    172 Nf85ab81544cd472aa0449c05a3866ba5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    173 schema:name DNA, Chloroplast
    174 rdf:type schema:DefinedTerm
    175 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    176 schema:name Biological Sciences
    177 rdf:type schema:DefinedTerm
    178 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    179 schema:name Genetics
    180 rdf:type schema:DefinedTerm
    181 sg:grant.3020956 http://pending.schema.org/fundedItem sg:pub.10.1186/1471-2229-6-21
    182 rdf:type schema:MonetaryGrant
    183 sg:journal.1024638 schema:issn 1471-2229
    184 schema:name BMC Plant Biology
    185 rdf:type schema:Periodical
    186 sg:person.01074441521.54 schema:affiliation https://www.grid.ac/institutes/grid.89336.37
    187 schema:familyName Jansen
    188 schema:givenName Robert K
    189 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074441521.54
    190 rdf:type schema:Person
    191 sg:person.01077560777.46 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
    192 schema:familyName Daniell
    193 schema:givenName Henry
    194 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077560777.46
    195 rdf:type schema:Person
    196 sg:person.01226555655.14 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
    197 schema:familyName Singh
    198 schema:givenName Nameirakpam D
    199 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01226555655.14
    200 rdf:type schema:Person
    201 sg:person.0741060164.87 schema:affiliation https://www.grid.ac/institutes/grid.463419.d
    202 schema:familyName Bausher
    203 schema:givenName Michael G
    204 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0741060164.87
    205 rdf:type schema:Person
    206 sg:person.07702204347.51 schema:affiliation https://www.grid.ac/institutes/grid.170430.1
    207 schema:familyName Lee
    208 schema:givenName Seung-Bum
    209 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07702204347.51
    210 rdf:type schema:Person
    211 sg:pub.10.1007/978-1-4020-3166-3_16 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003704496
    212 https://doi.org/10.1007/978-1-4020-3166-3_16
    213 rdf:type schema:CreativeWork
    214 sg:pub.10.1007/bf02173220 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051808271
    215 https://doi.org/10.1007/bf02173220
    216 rdf:type schema:CreativeWork
    217 sg:pub.10.1007/s00122-006-0254-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1017741842
    218 https://doi.org/10.1007/s00122-006-0254-x
    219 rdf:type schema:CreativeWork
    220 sg:pub.10.1007/s11103-004-0192-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012958676
    221 https://doi.org/10.1007/s11103-004-0192-4
    222 rdf:type schema:CreativeWork
    223 sg:pub.10.1007/s11103-004-2907-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1042569716
    224 https://doi.org/10.1007/s11103-004-2907-y
    225 rdf:type schema:CreativeWork
    226 sg:pub.10.1007/s11103-005-7704-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037412280
    227 https://doi.org/10.1007/s11103-005-7704-8
    228 rdf:type schema:CreativeWork
    229 sg:pub.10.1007/s11103-005-8882-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000744938
    230 https://doi.org/10.1007/s11103-005-8882-0
    231 rdf:type schema:CreativeWork
    232 sg:pub.10.1023/a:1022100404542 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036616219
    233 https://doi.org/10.1023/a:1022100404542
    234 rdf:type schema:CreativeWork
    235 sg:pub.10.1023/a:1022114427971 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043663629
    236 https://doi.org/10.1023/a:1022114427971
    237 rdf:type schema:CreativeWork
    238 sg:pub.10.1023/a:1024913304263 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022582626
    239 https://doi.org/10.1023/a:1024913304263
    240 rdf:type schema:CreativeWork
    241 sg:pub.10.1038/30234 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002445123
    242 https://doi.org/10.1038/30234
    243 rdf:type schema:CreativeWork
    244 sg:pub.10.1038/83559 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035185174
    245 https://doi.org/10.1038/83559
    246 rdf:type schema:CreativeWork
    247 sg:pub.10.1038/nbt0498-345 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053082515
    248 https://doi.org/10.1038/nbt0498-345
    249 rdf:type schema:CreativeWork
    250 sg:pub.10.1038/nbt0901-870 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033389344
    251 https://doi.org/10.1038/nbt0901-870
    252 rdf:type schema:CreativeWork
    253 sg:pub.10.1186/1471-2148-4-35 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038696808
    254 https://doi.org/10.1186/1471-2148-4-35
    255 rdf:type schema:CreativeWork
    256 sg:pub.10.1186/1471-2148-6-32 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025676655
    257 https://doi.org/10.1186/1471-2148-6-32
    258 rdf:type schema:CreativeWork
    259 sg:pub.10.1186/1471-2164-7-61 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004885371
    260 https://doi.org/10.1186/1471-2164-7-61
    261 rdf:type schema:CreativeWork
    262 https://doi.org/10.1002/j.1460-2075.1991.tb07859.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1077836709
    263 rdf:type schema:CreativeWork
    264 https://doi.org/10.1006/bojl.2000.0380 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021225328
    265 rdf:type schema:CreativeWork
    266 https://doi.org/10.1006/jmbi.2001.4921 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030695106
    267 rdf:type schema:CreativeWork
    268 https://doi.org/10.1016/j.plantsci.2005.01.023 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046935176
    269 rdf:type schema:CreativeWork
    270 https://doi.org/10.1016/j.tibtech.2005.03.008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030402717
    271 rdf:type schema:CreativeWork
    272 https://doi.org/10.1016/j.tplants.2004.08.008 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051166556
    273 rdf:type schema:CreativeWork
    274 https://doi.org/10.1016/j.tplants.2005.03.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028264806
    275 rdf:type schema:CreativeWork
    276 https://doi.org/10.1016/j.tplants.2005.03.007 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047948812
    277 rdf:type schema:CreativeWork
    278 https://doi.org/10.1016/j.vaccine.2004.11.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033612769
    279 rdf:type schema:CreativeWork
    280 https://doi.org/10.1016/s0076-6879(05)95020-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044300243
    281 rdf:type schema:CreativeWork
    282 https://doi.org/10.1016/s0168-9452(03)00202-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023136206
    283 rdf:type schema:CreativeWork
    284 https://doi.org/10.1016/s1360-1385(01)02193-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040540077
    285 rdf:type schema:CreativeWork
    286 https://doi.org/10.1046/j.1365-313x.1999.00508.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1014861581
    287 rdf:type schema:CreativeWork
    288 https://doi.org/10.1073/pnas.0400981101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002601571
    289 rdf:type schema:CreativeWork
    290 https://doi.org/10.1073/pnas.092136399 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005855907
    291 rdf:type schema:CreativeWork
    292 https://doi.org/10.1073/pnas.50.4.725 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033932144
    293 rdf:type schema:CreativeWork
    294 https://doi.org/10.1073/pnas.84.24.9054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022917385
    295 rdf:type schema:CreativeWork
    296 https://doi.org/10.1073/pnas.96.5.1840 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034531916
    297 rdf:type schema:CreativeWork
    298 https://doi.org/10.1079/9780851999043.0045 schema:sameAs https://app.dimensions.ai/details/publication/pub.1089218526
    299 rdf:type schema:CreativeWork
    300 https://doi.org/10.1080/07352680590935387 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042652821
    301 rdf:type schema:CreativeWork
    302 https://doi.org/10.1080/106351501750435086 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369200
    303 rdf:type schema:CreativeWork
    304 https://doi.org/10.1080/10635150290102339 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369285
    305 rdf:type schema:CreativeWork
    306 https://doi.org/10.1080/106351598260987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369875
    307 rdf:type schema:CreativeWork
    308 https://doi.org/10.1080/106351598261003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369877
    309 rdf:type schema:CreativeWork
    310 https://doi.org/10.1086/431800 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058717242
    311 rdf:type schema:CreativeWork
    312 https://doi.org/10.1093/bioinformatics/14.9.817 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029580565
    313 rdf:type schema:CreativeWork
    314 https://doi.org/10.1093/bioinformatics/bth352 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050086076
    315 rdf:type schema:CreativeWork
    316 https://doi.org/10.1093/molbev/msg159 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028763858
    317 rdf:type schema:CreativeWork
    318 https://doi.org/10.1093/molbev/msi129 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007025783
    319 rdf:type schema:CreativeWork
    320 https://doi.org/10.1093/molbev/msi173 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046141928
    321 rdf:type schema:CreativeWork
    322 https://doi.org/10.1093/molbev/msi191 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021548887
    323 rdf:type schema:CreativeWork
    324 https://doi.org/10.1093/nar/29.22.4633 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046065243
    325 rdf:type schema:CreativeWork
    326 https://doi.org/10.1093/oxfordjournals.molbev.a026137 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037680167
    327 rdf:type schema:CreativeWork
    328 https://doi.org/10.1093/sysbio/49.2.306 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060048348
    329 rdf:type schema:CreativeWork
    330 https://doi.org/10.1104/pp.010233 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040919241
    331 rdf:type schema:CreativeWork
    332 https://doi.org/10.1104/pp.103.020958 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028898291
    333 rdf:type schema:CreativeWork
    334 https://doi.org/10.1104/pp.104.045187 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051438324
    335 rdf:type schema:CreativeWork
    336 https://doi.org/10.1104/pp.104.050054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019832145
    337 rdf:type schema:CreativeWork
    338 https://doi.org/10.1104/pp.104.057729 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011954564
    339 rdf:type schema:CreativeWork
    340 https://doi.org/10.1104/pp.105.063040 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016274483
    341 rdf:type schema:CreativeWork
    342 https://doi.org/10.1105/tpc.13.3.645 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028576397
    343 rdf:type schema:CreativeWork
    344 https://doi.org/10.1111/j.1095-8339.2000.tb01588.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1003507977
    345 rdf:type schema:CreativeWork
    346 https://doi.org/10.1126/science.286.5441.947 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062567133
    347 rdf:type schema:CreativeWork
    348 https://doi.org/10.2307/2408678 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069917669
    349 rdf:type schema:CreativeWork
    350 https://doi.org/10.2307/25065680 schema:sameAs https://app.dimensions.ai/details/publication/pub.1069952613
    351 rdf:type schema:CreativeWork
    352 https://doi.org/10.2307/2656749 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070048547
    353 rdf:type schema:CreativeWork
    354 https://doi.org/10.2307/3871412 schema:sameAs https://app.dimensions.ai/details/publication/pub.1070469195
    355 rdf:type schema:CreativeWork
    356 https://doi.org/10.3732/ajb.89.11.1809 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044599708
    357 rdf:type schema:CreativeWork
    358 https://doi.org/10.3732/ajb.90.12.1758 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032248492
    359 rdf:type schema:CreativeWork
    360 https://doi.org/10.3732/ajb.91.6.997 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025683914
    361 rdf:type schema:CreativeWork
    362 https://www.grid.ac/institutes/grid.170430.1 schema:alternateName University of Central Florida
    363 schema:name Dept. of Molecular Biology & Microbiology, University of Central Florida, Biomolecular Science, Building #20, 32816–2364, Orlando, FL, USA
    364 rdf:type schema:Organization
    365 https://www.grid.ac/institutes/grid.463419.d schema:alternateName Agricultural Research Service
    366 schema:name USDA-ARS, Horticultural Research Laboratory, 34945–3030, Fort Pierce, FL, USA
    367 rdf:type schema:Organization
    368 https://www.grid.ac/institutes/grid.89336.37 schema:alternateName The University of Texas at Austin
    369 schema:name Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Patterson Laboratories 141, 78712, Austin, TX, USA
    370 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...