OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2012-12

AUTHORS

Christian Colmsee, Martin Mascher, Tobias Czauderna, Anja Hartmann, Urte Schlüter, Nina Zellerhoff, Jessica Schmitz, Andrea Bräutigam, Thea R Pick, Philipp Alter, Manfred Gahrtz, Sandra Witt, Alisdair R Fernie, Frederik Börnke, Holger Fahnenstich, Marcel Bucher, Thomas Dresselhaus, Andreas PM Weber, Falk Schreiber, Uwe Scholz, Uwe Sonnewald

ABSTRACT

BACKGROUND: Maize is a major crop plant, grown for human and animal nutrition, as well as a renewable resource for bioenergy. When looking at the problems of limited fossil fuels, the growth of the world's population or the world's climate change, it is important to find ways to increase the yield and biomass of maize and to study how it reacts to specific abiotic and biotic stress situations. Within the OPTIMAS systems biology project maize plants were grown under a large set of controlled stress conditions, phenotypically characterised and plant material was harvested to analyse the effect of specific environmental conditions or developmental stages. Transcriptomic, metabolomic, ionomic and proteomic parameters were measured from the same plant material allowing the comparison of results across different omics domains. A data warehouse was developed to store experimental data as well as analysis results of the performed experiments. DESCRIPTION: The OPTIMAS Data Warehouse (OPTIMAS-DW) is a comprehensive data collection for maize and integrates data from different data domains such as transcriptomics, metabolomics, ionomics, proteomics and phenomics. Within the OPTIMAS project, a 44K oligo chip was designed and annotated to describe the functions of the selected unigenes. Several treatment- and plant growth stage experiments were performed and measured data were filled into data templates and imported into the data warehouse by a Java based import tool. A web interface allows users to browse through all stored experiment data in OPTIMAS-DW including all data domains. Furthermore, the user can filter the data to extract information of particular interest. All data can be exported into different file formats for further data analysis and visualisation. The data analysis integrates data from different data domains and enables the user to find answers to different systems biology questions. Finally, maize specific pathway information is provided. CONCLUSIONS: With OPTIMAS-DW a data warehouse for maize was established, which is able to handle different data domains, comprises several analysis results that will support researchers within their work and supports systems biological research in particular. The system is available at http://www.optimas-bioenergy.org/optimas_dw. More... »

PAGES

245

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2229-12-245

DOI

http://dx.doi.org/10.1186/1471-2229-12-245

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1029923822

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/23272737


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Database Management Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Databases, Factual", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Internet", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Metabolomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Proteomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "User-Computer Interface", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zea mays", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Colmsee", 
        "givenName": "Christian", 
        "id": "sg:person.01237251524.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01237251524.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Mascher", 
        "givenName": "Martin", 
        "id": "sg:person.01155116665.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01155116665.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Czauderna", 
        "givenName": "Tobias", 
        "id": "sg:person.01367464513.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01367464513.01"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hartmann", 
        "givenName": "Anja", 
        "id": "sg:person.01342503602.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342503602.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Erlangen-Nuremberg", 
          "id": "https://www.grid.ac/institutes/grid.5330.5", 
          "name": [
            "Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, Staudtstr. 5, 91054, Erlangen, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schl\u00fcter", 
        "givenName": "Urte", 
        "id": "sg:person.01123023124.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123023124.11"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Cologne", 
          "id": "https://www.grid.ac/institutes/grid.6190.e", 
          "name": [
            "University of Cologne, Botanical Institute, 50923, Albertus-Magnus-Platz, K\u00f6ln, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zellerhoff", 
        "givenName": "Nina", 
        "id": "sg:person.01016313353.38", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01016313353.38"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Cologne", 
          "id": "https://www.grid.ac/institutes/grid.6190.e", 
          "name": [
            "University of Cologne, Botanical Institute, 50923, Albertus-Magnus-Platz, K\u00f6ln, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schmitz", 
        "givenName": "Jessica", 
        "id": "sg:person.0640051654.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0640051654.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Heinrich Heine University D\u00fcsseldorf", 
          "id": "https://www.grid.ac/institutes/grid.411327.2", 
          "name": [
            "Plant Biochemistry, Heinrich-Heine-University, Universit\u00e4tsstr. 1, 40225, D\u00fcsseldorf, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Br\u00e4utigam", 
        "givenName": "Andrea", 
        "id": "sg:person.01273120725.22", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01273120725.22"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Heinrich Heine University D\u00fcsseldorf", 
          "id": "https://www.grid.ac/institutes/grid.411327.2", 
          "name": [
            "Plant Biochemistry, Heinrich-Heine-University, Universit\u00e4tsstr. 1, 40225, D\u00fcsseldorf, Germany", 
            "International Graduate Program for Plant Science (iGrad-plant), Heinrich Heine University D\u00fcsseldorf, 40225, D\u00fcsseldorf, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Pick", 
        "givenName": "Thea R", 
        "id": "sg:person.01006574524.45", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01006574524.45"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Regensburg", 
          "id": "https://www.grid.ac/institutes/grid.7727.5", 
          "name": [
            "Cell Biology and Plant Biochemistry, University of Regensburg, Universit\u00e4tsstr. 31, 93040, Regensburg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Alter", 
        "givenName": "Philipp", 
        "id": "sg:person.0671054002.91", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0671054002.91"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Regensburg", 
          "id": "https://www.grid.ac/institutes/grid.7727.5", 
          "name": [
            "Cell Biology and Plant Biochemistry, University of Regensburg, Universit\u00e4tsstr. 31, 93040, Regensburg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gahrtz", 
        "givenName": "Manfred", 
        "id": "sg:person.0656331120.81", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0656331120.81"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Max Planck Institute for Molecular Plant Physiology", 
          "id": "https://www.grid.ac/institutes/grid.418390.7", 
          "name": [
            "Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Am M\u00fchlenberg 1, 14476, Potsdam-Golm, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Witt", 
        "givenName": "Sandra", 
        "id": "sg:person.0716674261.63", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0716674261.63"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Max Planck Institute for Molecular Plant Physiology", 
          "id": "https://www.grid.ac/institutes/grid.418390.7", 
          "name": [
            "Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Am M\u00fchlenberg 1, 14476, Potsdam-Golm, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fernie", 
        "givenName": "Alisdair R", 
        "id": "sg:person.01021163534.25", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021163534.25"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Erlangen-Nuremberg", 
          "id": "https://www.grid.ac/institutes/grid.5330.5", 
          "name": [
            "Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, Staudtstr. 5, 91054, Erlangen, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "B\u00f6rnke", 
        "givenName": "Frederik", 
        "id": "sg:person.01213765223.94", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213765223.94"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "metanomics GmbH, Tegeler Weg 33, 10589, Berlin, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fahnenstich", 
        "givenName": "Holger", 
        "id": "sg:person.01004531563.85", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004531563.85"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Cologne", 
          "id": "https://www.grid.ac/institutes/grid.6190.e", 
          "name": [
            "University of Cologne, Botanical Institute, 50923, Albertus-Magnus-Platz, K\u00f6ln, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bucher", 
        "givenName": "Marcel", 
        "id": "sg:person.01362110505.53", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362110505.53"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Regensburg", 
          "id": "https://www.grid.ac/institutes/grid.7727.5", 
          "name": [
            "Cell Biology and Plant Biochemistry, University of Regensburg, Universit\u00e4tsstr. 31, 93040, Regensburg, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Dresselhaus", 
        "givenName": "Thomas", 
        "id": "sg:person.01337327053.66", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01337327053.66"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Heinrich Heine University D\u00fcsseldorf", 
          "id": "https://www.grid.ac/institutes/grid.411327.2", 
          "name": [
            "Plant Biochemistry, Heinrich-Heine-University, Universit\u00e4tsstr. 1, 40225, D\u00fcsseldorf, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Weber", 
        "givenName": "Andreas PM", 
        "id": "sg:person.011107142202.70", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011107142202.70"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Martin Luther University Halle-Wittenberg", 
          "id": "https://www.grid.ac/institutes/grid.9018.0", 
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland", 
            "Martin Luther University Halle-Wittenberg, Institute of Computer Science, Von-Seckendorff-Platz 1, 06120, Halle, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schreiber", 
        "givenName": "Falk", 
        "id": "sg:person.0712477053.24", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712477053.24"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Scholz", 
        "givenName": "Uwe", 
        "id": "sg:person.0734144065.39", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0734144065.39"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Erlangen-Nuremberg", 
          "id": "https://www.grid.ac/institutes/grid.5330.5", 
          "name": [
            "Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, Staudtstr. 5, 91054, Erlangen, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sonnewald", 
        "givenName": "Uwe", 
        "id": "sg:person.01205471253.03", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205471253.03"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1105/tpc.111.090324", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001323117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti610", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006001436"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.111.173047", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010902933"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.1917404", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010934228"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0022-2836(05)80360-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013618994"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nprot.2012.002", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014648827", 
          "https://doi.org/10.1038/nprot.2012.002"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-9-559", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020312314", 
          "https://doi.org/10.1186/1471-2105-9-559"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature07723", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020371055", 
          "https://doi.org/10.1038/nature07723"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt.1558", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020951156", 
          "https://doi.org/10.1038/nbt.1558"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nbt.1558", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020951156", 
          "https://doi.org/10.1038/nbt.1558"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1105/tpc.111.230110", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022862071"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0026683", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023100850"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm965", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023626877"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10142-008-0083-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1024797241", 
          "https://doi.org/10.1007/s10142-008-0083-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.112.204420", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029128186"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkn764", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030155285"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkh011", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030599734"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkj011", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032696078"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1752-0509-2-16", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037049388", 
          "https://doi.org/10.1186/1752-0509-2-16"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm331", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037739631"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-7-109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038053078", 
          "https://doi.org/10.1186/1471-2105-7-109"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-7-109", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038053078", 
          "https://doi.org/10.1186/1471-2105-7-109"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkh036", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040530060"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr1004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042402197"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1178534", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062460510"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1515/jib-2007-88", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1099768241"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2012-12", 
    "datePublishedReg": "2012-12-01", 
    "description": "BACKGROUND: Maize is a major crop plant, grown for human and animal nutrition, as well as a renewable resource for bioenergy. When looking at the problems of limited fossil fuels, the growth of the world's population or the world's climate change, it is important to find ways to increase the yield and biomass of maize and to study how it reacts to specific abiotic and biotic stress situations. Within the OPTIMAS systems biology project maize plants were grown under a large set of controlled stress conditions, phenotypically characterised and plant material was harvested to analyse the effect of specific environmental conditions or developmental stages. Transcriptomic, metabolomic, ionomic and proteomic parameters were measured from the same plant material allowing the comparison of results across different omics domains. A data warehouse was developed to store experimental data as well as analysis results of the performed experiments.\nDESCRIPTION: The OPTIMAS Data Warehouse (OPTIMAS-DW) is a comprehensive data collection for maize and integrates data from different data domains such as transcriptomics, metabolomics, ionomics, proteomics and phenomics. Within the OPTIMAS project, a 44K oligo chip was designed and annotated to describe the functions of the selected unigenes. Several treatment- and plant growth stage experiments were performed and measured data were filled into data templates and imported into the data warehouse by a Java based import tool. A web interface allows users to browse through all stored experiment data in OPTIMAS-DW including all data domains. Furthermore, the user can filter the data to extract information of particular interest. All data can be exported into different file formats for further data analysis and visualisation. The data analysis integrates data from different data domains and enables the user to find answers to different systems biology questions. Finally, maize specific pathway information is provided.\nCONCLUSIONS: With OPTIMAS-DW a data warehouse for maize was established, which is able to handle different data domains, comprises several analysis results that will support researchers within their work and supports systems biological research in particular. The system is available at http://www.optimas-bioenergy.org/optimas_dw.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/1471-2229-12-245", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1024638", 
        "issn": [
          "1471-2229"
        ], 
        "name": "BMC Plant Biology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "12"
      }
    ], 
    "name": "OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize", 
    "pagination": "245", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "8e8db7e098886fde54ec37ae8a885faedaf758ce60913363118ecd90f6859154"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "23272737"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100967807"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/1471-2229-12-245"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1029923822"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/1471-2229-12-245", 
      "https://app.dimensions.ai/details/publication/pub.1029923822"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T20:04", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8681_00000550.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2F1471-2229-12-245"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-12-245'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-12-245'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-12-245'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2229-12-245'


 

This table displays all metadata directly associated to this object as RDF triples.

348 TRIPLES      21 PREDICATES      61 URIs      29 LITERALS      17 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/1471-2229-12-245 schema:about N20a4ee9f909a4f399c09b8f9f461c7a2
2 N2ead0c603fe74efaa8380cee02e822c4
3 N7027a3249a8248baba6e43cf21989e89
4 N9a257434277e404da0532f0fc8912276
5 Nbb8d508a920549c0be1361d3b8a3f606
6 Nd62080c2667a467e8d7404696b64cb05
7 Ndaa13e3dcc314abdb8e63b2d6968958d
8 Nf2e48cea1a4044a78f370ebf186f8988
9 anzsrc-for:06
10 anzsrc-for:0601
11 schema:author N76b829056b85438bbe830e060722179e
12 schema:citation sg:pub.10.1007/s10142-008-0083-x
13 sg:pub.10.1038/nature07723
14 sg:pub.10.1038/nbt.1558
15 sg:pub.10.1038/nprot.2012.002
16 sg:pub.10.1186/1471-2105-7-109
17 sg:pub.10.1186/1471-2105-9-559
18 sg:pub.10.1186/1752-0509-2-16
19 https://doi.org/10.1016/s0022-2836(05)80360-2
20 https://doi.org/10.1093/bioinformatics/bti610
21 https://doi.org/10.1093/bioinformatics/btm331
22 https://doi.org/10.1093/nar/gkh011
23 https://doi.org/10.1093/nar/gkh036
24 https://doi.org/10.1093/nar/gkj011
25 https://doi.org/10.1093/nar/gkm965
26 https://doi.org/10.1093/nar/gkn764
27 https://doi.org/10.1093/nar/gkr1004
28 https://doi.org/10.1101/gr.1917404
29 https://doi.org/10.1104/pp.111.173047
30 https://doi.org/10.1104/pp.112.204420
31 https://doi.org/10.1105/tpc.111.090324
32 https://doi.org/10.1105/tpc.111.230110
33 https://doi.org/10.1126/science.1178534
34 https://doi.org/10.1371/journal.pone.0026683
35 https://doi.org/10.1515/jib-2007-88
36 schema:datePublished 2012-12
37 schema:datePublishedReg 2012-12-01
38 schema:description BACKGROUND: Maize is a major crop plant, grown for human and animal nutrition, as well as a renewable resource for bioenergy. When looking at the problems of limited fossil fuels, the growth of the world's population or the world's climate change, it is important to find ways to increase the yield and biomass of maize and to study how it reacts to specific abiotic and biotic stress situations. Within the OPTIMAS systems biology project maize plants were grown under a large set of controlled stress conditions, phenotypically characterised and plant material was harvested to analyse the effect of specific environmental conditions or developmental stages. Transcriptomic, metabolomic, ionomic and proteomic parameters were measured from the same plant material allowing the comparison of results across different omics domains. A data warehouse was developed to store experimental data as well as analysis results of the performed experiments. DESCRIPTION: The OPTIMAS Data Warehouse (OPTIMAS-DW) is a comprehensive data collection for maize and integrates data from different data domains such as transcriptomics, metabolomics, ionomics, proteomics and phenomics. Within the OPTIMAS project, a 44K oligo chip was designed and annotated to describe the functions of the selected unigenes. Several treatment- and plant growth stage experiments were performed and measured data were filled into data templates and imported into the data warehouse by a Java based import tool. A web interface allows users to browse through all stored experiment data in OPTIMAS-DW including all data domains. Furthermore, the user can filter the data to extract information of particular interest. All data can be exported into different file formats for further data analysis and visualisation. The data analysis integrates data from different data domains and enables the user to find answers to different systems biology questions. Finally, maize specific pathway information is provided. CONCLUSIONS: With OPTIMAS-DW a data warehouse for maize was established, which is able to handle different data domains, comprises several analysis results that will support researchers within their work and supports systems biological research in particular. The system is available at http://www.optimas-bioenergy.org/optimas_dw.
39 schema:genre research_article
40 schema:inLanguage en
41 schema:isAccessibleForFree true
42 schema:isPartOf N81af6b8728e64bfcb3b247076922c182
43 Nd3eb451bf22342769c665eef9cc8830f
44 sg:journal.1024638
45 schema:name OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize
46 schema:pagination 245
47 schema:productId N14f8f07836434fda8516a49361b774e7
48 N30c94a3144a347e3864f932d98e0624b
49 N81051b94513c414fad9dec981614f1b2
50 N8e998e62ede24aee82060fc654428e20
51 Nd1788a6006554595b37c9804678c0eb5
52 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029923822
53 https://doi.org/10.1186/1471-2229-12-245
54 schema:sdDatePublished 2019-04-10T20:04
55 schema:sdLicense https://scigraph.springernature.com/explorer/license/
56 schema:sdPublisher N86fa47ef9af8429bb6019beb6766cdb8
57 schema:url http://link.springer.com/10.1186%2F1471-2229-12-245
58 sgo:license sg:explorer/license/
59 sgo:sdDataset articles
60 rdf:type schema:ScholarlyArticle
61 N1153689aab6048f99ee1963e8b320b0a rdf:first sg:person.01006574524.45
62 rdf:rest Necde0ef76f2847b28c2c0081f163590c
63 N14f8f07836434fda8516a49361b774e7 schema:name nlm_unique_id
64 schema:value 100967807
65 rdf:type schema:PropertyValue
66 N1e1d1ee9fe2c41d99dee44eaa50d6b0c schema:name metanomics GmbH, Tegeler Weg 33, 10589, Berlin, Germany
67 rdf:type schema:Organization
68 N20a4ee9f909a4f399c09b8f9f461c7a2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
69 schema:name Zea mays
70 rdf:type schema:DefinedTerm
71 N2919874e28be4d36b987265bd52ec443 rdf:first sg:person.01016313353.38
72 rdf:rest N8d2a290115cc41608d4d34571b5a12c7
73 N2c5039a457f342318e84f934edeffed0 rdf:first sg:person.011107142202.70
74 rdf:rest N8a3c93cea2f540ceb1d8f5f77d5855ec
75 N2ead0c603fe74efaa8380cee02e822c4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
76 schema:name Internet
77 rdf:type schema:DefinedTerm
78 N30c94a3144a347e3864f932d98e0624b schema:name pubmed_id
79 schema:value 23272737
80 rdf:type schema:PropertyValue
81 N44a3f07400c447919dc2ec43b55600ff schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
82 rdf:type schema:Organization
83 N4d8319b0a7f24a52a75f18e8cb7b0c5e schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
84 rdf:type schema:Organization
85 N4eec503bdc6e449b96acf50516dbe482 rdf:first sg:person.01155116665.01
86 rdf:rest Nf0047dc4e56a4b688da664a8aae3198c
87 N631bee36229542f094a5f49485908e0a rdf:first sg:person.01021163534.25
88 rdf:rest N6ae1c8872f1e49dd9566907366f39ac1
89 N6ae1c8872f1e49dd9566907366f39ac1 rdf:first sg:person.01213765223.94
90 rdf:rest Ndef1a0a4ba5b468bada3792ca93d9ad6
91 N7027a3249a8248baba6e43cf21989e89 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
92 schema:name Computational Biology
93 rdf:type schema:DefinedTerm
94 N76b829056b85438bbe830e060722179e rdf:first sg:person.01237251524.02
95 rdf:rest N4eec503bdc6e449b96acf50516dbe482
96 N7e56935f818645b8a265f21c1bb023f3 rdf:first sg:person.01337327053.66
97 rdf:rest N2c5039a457f342318e84f934edeffed0
98 N81051b94513c414fad9dec981614f1b2 schema:name doi
99 schema:value 10.1186/1471-2229-12-245
100 rdf:type schema:PropertyValue
101 N818a8c33c4124908b58cb9e5ee30d4df rdf:first sg:person.01362110505.53
102 rdf:rest N7e56935f818645b8a265f21c1bb023f3
103 N81af6b8728e64bfcb3b247076922c182 schema:issueNumber 1
104 rdf:type schema:PublicationIssue
105 N839ea248367140b9909c5f679996f258 schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
106 rdf:type schema:Organization
107 N86fa47ef9af8429bb6019beb6766cdb8 schema:name Springer Nature - SN SciGraph project
108 rdf:type schema:Organization
109 N8a3c93cea2f540ceb1d8f5f77d5855ec rdf:first sg:person.0712477053.24
110 rdf:rest Nfbb1b3363cd74fb3b13f59947ca0d0cf
111 N8b89c9ce001543d7bb98946358c5f5e5 rdf:first sg:person.01123023124.11
112 rdf:rest N2919874e28be4d36b987265bd52ec443
113 N8d2a290115cc41608d4d34571b5a12c7 rdf:first sg:person.0640051654.51
114 rdf:rest Nb3d41d9eff4d40efa0a87e805035db7a
115 N8e998e62ede24aee82060fc654428e20 schema:name dimensions_id
116 schema:value pub.1029923822
117 rdf:type schema:PropertyValue
118 N9714392b90594b43b7a48350b61e0aa0 rdf:first sg:person.0716674261.63
119 rdf:rest N631bee36229542f094a5f49485908e0a
120 N9a257434277e404da0532f0fc8912276 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
121 schema:name Databases, Factual
122 rdf:type schema:DefinedTerm
123 Nb0a4ad644ee749328437db84852e7462 rdf:first sg:person.01342503602.38
124 rdf:rest N8b89c9ce001543d7bb98946358c5f5e5
125 Nb3d41d9eff4d40efa0a87e805035db7a rdf:first sg:person.01273120725.22
126 rdf:rest N1153689aab6048f99ee1963e8b320b0a
127 Nb97fc1956b4e4dcbb4e90984f633b229 schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
128 rdf:type schema:Organization
129 Nbb8d508a920549c0be1361d3b8a3f606 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
130 schema:name User-Computer Interface
131 rdf:type schema:DefinedTerm
132 Nbf39c37b231340fcb4c8b6e8425b09ae schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
133 rdf:type schema:Organization
134 Nd1788a6006554595b37c9804678c0eb5 schema:name readcube_id
135 schema:value 8e8db7e098886fde54ec37ae8a885faedaf758ce60913363118ecd90f6859154
136 rdf:type schema:PropertyValue
137 Nd3eb451bf22342769c665eef9cc8830f schema:volumeNumber 12
138 rdf:type schema:PublicationVolume
139 Nd62080c2667a467e8d7404696b64cb05 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
140 schema:name Metabolomics
141 rdf:type schema:DefinedTerm
142 Ndaa13e3dcc314abdb8e63b2d6968958d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
143 schema:name Proteomics
144 rdf:type schema:DefinedTerm
145 Ndef1a0a4ba5b468bada3792ca93d9ad6 rdf:first sg:person.01004531563.85
146 rdf:rest N818a8c33c4124908b58cb9e5ee30d4df
147 Ne305816f3500436bbb6d101023d0369f rdf:first sg:person.01205471253.03
148 rdf:rest rdf:nil
149 Necde0ef76f2847b28c2c0081f163590c rdf:first sg:person.0671054002.91
150 rdf:rest Nf6ba77ed6ed04040bf6171bd6eadf7b0
151 Nf0047dc4e56a4b688da664a8aae3198c rdf:first sg:person.01367464513.01
152 rdf:rest Nb0a4ad644ee749328437db84852e7462
153 Nf2e48cea1a4044a78f370ebf186f8988 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
154 schema:name Database Management Systems
155 rdf:type schema:DefinedTerm
156 Nf6ba77ed6ed04040bf6171bd6eadf7b0 rdf:first sg:person.0656331120.81
157 rdf:rest N9714392b90594b43b7a48350b61e0aa0
158 Nfbb1b3363cd74fb3b13f59947ca0d0cf rdf:first sg:person.0734144065.39
159 rdf:rest Ne305816f3500436bbb6d101023d0369f
160 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
161 schema:name Biological Sciences
162 rdf:type schema:DefinedTerm
163 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
164 schema:name Biochemistry and Cell Biology
165 rdf:type schema:DefinedTerm
166 sg:journal.1024638 schema:issn 1471-2229
167 schema:name BMC Plant Biology
168 rdf:type schema:Periodical
169 sg:person.01004531563.85 schema:affiliation N1e1d1ee9fe2c41d99dee44eaa50d6b0c
170 schema:familyName Fahnenstich
171 schema:givenName Holger
172 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004531563.85
173 rdf:type schema:Person
174 sg:person.01006574524.45 schema:affiliation https://www.grid.ac/institutes/grid.411327.2
175 schema:familyName Pick
176 schema:givenName Thea R
177 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01006574524.45
178 rdf:type schema:Person
179 sg:person.01016313353.38 schema:affiliation https://www.grid.ac/institutes/grid.6190.e
180 schema:familyName Zellerhoff
181 schema:givenName Nina
182 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01016313353.38
183 rdf:type schema:Person
184 sg:person.01021163534.25 schema:affiliation https://www.grid.ac/institutes/grid.418390.7
185 schema:familyName Fernie
186 schema:givenName Alisdair R
187 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021163534.25
188 rdf:type schema:Person
189 sg:person.011107142202.70 schema:affiliation https://www.grid.ac/institutes/grid.411327.2
190 schema:familyName Weber
191 schema:givenName Andreas PM
192 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011107142202.70
193 rdf:type schema:Person
194 sg:person.01123023124.11 schema:affiliation https://www.grid.ac/institutes/grid.5330.5
195 schema:familyName Schlüter
196 schema:givenName Urte
197 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123023124.11
198 rdf:type schema:Person
199 sg:person.01155116665.01 schema:affiliation Nbf39c37b231340fcb4c8b6e8425b09ae
200 schema:familyName Mascher
201 schema:givenName Martin
202 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01155116665.01
203 rdf:type schema:Person
204 sg:person.01205471253.03 schema:affiliation https://www.grid.ac/institutes/grid.5330.5
205 schema:familyName Sonnewald
206 schema:givenName Uwe
207 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01205471253.03
208 rdf:type schema:Person
209 sg:person.01213765223.94 schema:affiliation https://www.grid.ac/institutes/grid.5330.5
210 schema:familyName Börnke
211 schema:givenName Frederik
212 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01213765223.94
213 rdf:type schema:Person
214 sg:person.01237251524.02 schema:affiliation N4d8319b0a7f24a52a75f18e8cb7b0c5e
215 schema:familyName Colmsee
216 schema:givenName Christian
217 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01237251524.02
218 rdf:type schema:Person
219 sg:person.01273120725.22 schema:affiliation https://www.grid.ac/institutes/grid.411327.2
220 schema:familyName Bräutigam
221 schema:givenName Andrea
222 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01273120725.22
223 rdf:type schema:Person
224 sg:person.01337327053.66 schema:affiliation https://www.grid.ac/institutes/grid.7727.5
225 schema:familyName Dresselhaus
226 schema:givenName Thomas
227 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01337327053.66
228 rdf:type schema:Person
229 sg:person.01342503602.38 schema:affiliation N839ea248367140b9909c5f679996f258
230 schema:familyName Hartmann
231 schema:givenName Anja
232 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342503602.38
233 rdf:type schema:Person
234 sg:person.01362110505.53 schema:affiliation https://www.grid.ac/institutes/grid.6190.e
235 schema:familyName Bucher
236 schema:givenName Marcel
237 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01362110505.53
238 rdf:type schema:Person
239 sg:person.01367464513.01 schema:affiliation Nb97fc1956b4e4dcbb4e90984f633b229
240 schema:familyName Czauderna
241 schema:givenName Tobias
242 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01367464513.01
243 rdf:type schema:Person
244 sg:person.0640051654.51 schema:affiliation https://www.grid.ac/institutes/grid.6190.e
245 schema:familyName Schmitz
246 schema:givenName Jessica
247 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0640051654.51
248 rdf:type schema:Person
249 sg:person.0656331120.81 schema:affiliation https://www.grid.ac/institutes/grid.7727.5
250 schema:familyName Gahrtz
251 schema:givenName Manfred
252 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0656331120.81
253 rdf:type schema:Person
254 sg:person.0671054002.91 schema:affiliation https://www.grid.ac/institutes/grid.7727.5
255 schema:familyName Alter
256 schema:givenName Philipp
257 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0671054002.91
258 rdf:type schema:Person
259 sg:person.0712477053.24 schema:affiliation https://www.grid.ac/institutes/grid.9018.0
260 schema:familyName Schreiber
261 schema:givenName Falk
262 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712477053.24
263 rdf:type schema:Person
264 sg:person.0716674261.63 schema:affiliation https://www.grid.ac/institutes/grid.418390.7
265 schema:familyName Witt
266 schema:givenName Sandra
267 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0716674261.63
268 rdf:type schema:Person
269 sg:person.0734144065.39 schema:affiliation N44a3f07400c447919dc2ec43b55600ff
270 schema:familyName Scholz
271 schema:givenName Uwe
272 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0734144065.39
273 rdf:type schema:Person
274 sg:pub.10.1007/s10142-008-0083-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1024797241
275 https://doi.org/10.1007/s10142-008-0083-x
276 rdf:type schema:CreativeWork
277 sg:pub.10.1038/nature07723 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020371055
278 https://doi.org/10.1038/nature07723
279 rdf:type schema:CreativeWork
280 sg:pub.10.1038/nbt.1558 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020951156
281 https://doi.org/10.1038/nbt.1558
282 rdf:type schema:CreativeWork
283 sg:pub.10.1038/nprot.2012.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014648827
284 https://doi.org/10.1038/nprot.2012.002
285 rdf:type schema:CreativeWork
286 sg:pub.10.1186/1471-2105-7-109 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038053078
287 https://doi.org/10.1186/1471-2105-7-109
288 rdf:type schema:CreativeWork
289 sg:pub.10.1186/1471-2105-9-559 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020312314
290 https://doi.org/10.1186/1471-2105-9-559
291 rdf:type schema:CreativeWork
292 sg:pub.10.1186/1752-0509-2-16 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037049388
293 https://doi.org/10.1186/1752-0509-2-16
294 rdf:type schema:CreativeWork
295 https://doi.org/10.1016/s0022-2836(05)80360-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013618994
296 rdf:type schema:CreativeWork
297 https://doi.org/10.1093/bioinformatics/bti610 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006001436
298 rdf:type schema:CreativeWork
299 https://doi.org/10.1093/bioinformatics/btm331 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037739631
300 rdf:type schema:CreativeWork
301 https://doi.org/10.1093/nar/gkh011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030599734
302 rdf:type schema:CreativeWork
303 https://doi.org/10.1093/nar/gkh036 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040530060
304 rdf:type schema:CreativeWork
305 https://doi.org/10.1093/nar/gkj011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032696078
306 rdf:type schema:CreativeWork
307 https://doi.org/10.1093/nar/gkm965 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023626877
308 rdf:type schema:CreativeWork
309 https://doi.org/10.1093/nar/gkn764 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030155285
310 rdf:type schema:CreativeWork
311 https://doi.org/10.1093/nar/gkr1004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042402197
312 rdf:type schema:CreativeWork
313 https://doi.org/10.1101/gr.1917404 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010934228
314 rdf:type schema:CreativeWork
315 https://doi.org/10.1104/pp.111.173047 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010902933
316 rdf:type schema:CreativeWork
317 https://doi.org/10.1104/pp.112.204420 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029128186
318 rdf:type schema:CreativeWork
319 https://doi.org/10.1105/tpc.111.090324 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001323117
320 rdf:type schema:CreativeWork
321 https://doi.org/10.1105/tpc.111.230110 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022862071
322 rdf:type schema:CreativeWork
323 https://doi.org/10.1126/science.1178534 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062460510
324 rdf:type schema:CreativeWork
325 https://doi.org/10.1371/journal.pone.0026683 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023100850
326 rdf:type schema:CreativeWork
327 https://doi.org/10.1515/jib-2007-88 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099768241
328 rdf:type schema:CreativeWork
329 https://www.grid.ac/institutes/grid.411327.2 schema:alternateName Heinrich Heine University Düsseldorf
330 schema:name International Graduate Program for Plant Science (iGrad-plant), Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany
331 Plant Biochemistry, Heinrich-Heine-University, Universitätsstr. 1, 40225, Düsseldorf, Germany
332 rdf:type schema:Organization
333 https://www.grid.ac/institutes/grid.418390.7 schema:alternateName Max Planck Institute for Molecular Plant Physiology
334 schema:name Department of Molecular Physiology, Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
335 rdf:type schema:Organization
336 https://www.grid.ac/institutes/grid.5330.5 schema:alternateName University of Erlangen-Nuremberg
337 schema:name Department of Biology, Friedrich-Alexander University of Erlangen-Nuremberg, Staudtstr. 5, 91054, Erlangen, Germany
338 rdf:type schema:Organization
339 https://www.grid.ac/institutes/grid.6190.e schema:alternateName University of Cologne
340 schema:name University of Cologne, Botanical Institute, 50923, Albertus-Magnus-Platz, Köln, Germany
341 rdf:type schema:Organization
342 https://www.grid.ac/institutes/grid.7727.5 schema:alternateName University of Regensburg
343 schema:name Cell Biology and Plant Biochemistry, University of Regensburg, Universitätsstr. 31, 93040, Regensburg, Germany
344 rdf:type schema:Organization
345 https://www.grid.ac/institutes/grid.9018.0 schema:alternateName Martin Luther University Halle-Wittenberg
346 schema:name Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Stadt Seeland
347 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Von-Seckendorff-Platz 1, 06120, Halle, Germany
348 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...