Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2007-12

AUTHORS

Linda A Raubeson, Rhiannon Peery, Timothy W Chumley, Chris Dziubek, H Matthew Fourcade, Jeffrey L Boore, Robert K Jansen

ABSTRACT

BACKGROUND: The number of completely sequenced plastid genomes available is growing rapidly. This array of sequences presents new opportunities to perform comparative analyses. In comparative studies, it is often useful to compare across wide phylogenetic spans and, within angiosperms, to include representatives from basally diverging lineages such as the genomes reported here: Nuphar advena (from a basal-most lineage) and Ranunculus macranthus (a basal eudicot). We report these two new plastid genome sequences and make comparisons (within angiosperms, seed plants, or all photosynthetic lineages) to evaluate features such as the status of ycf15 and ycf68 as protein coding genes, the distribution of simple sequence repeats (SSRs) and longer dispersed repeats (SDR), and patterns of nucleotide composition. RESULTS: The Nuphar [GenBank:NC_008788] and Ranunculus [GenBank:NC_008796] plastid genomes share characteristics of gene content and organization with many other chloroplast genomes. Like other plastid genomes, these genomes are A+T-rich, except for rRNA and tRNA genes. Detailed comparisons of Nuphar with Nymphaea, another Nymphaeaceae, show that more than two-thirds of these genomes exhibit at least 95% sequence identity and that most SSRs are shared. In broader comparisons, SSRs vary among genomes in terms of abundance and length and most contain repeat motifs based on A and T nucleotides. CONCLUSION: SSR and SDR abundance varies by genome and, for SSRs, is proportional to genome size. Long SDRs are rare in the genomes assessed. SSRs occur less frequently than predicted and, although the majority of the repeat motifs do include A and T nucleotides, the A+T bias in SSRs is less than that predicted from the underlying genomic nucleotide composition. In codon usage third positions show an A+T bias, however variation in codon usage does not correlate with differences in A+T-richness. Thus, although plastome nucleotide composition shows "A+T richness", an A+T bias is not apparent upon more in-depth analysis, at least in these aspects. The pattern of evolution in the sequences identified as ycf15 and ycf68 is not consistent with them being protein-coding genes. In fact, these regions show no evidence of sequence conservation beyond what is normal for non-coding regions of the IR. More... »

PAGES

174

References to SciGraph publications

  • 2004. Chloroplast Genetic Engineering in MOLECULAR BIOLOGY AND BIOTECHNOLOGY OF PLANT ORGANELLES
  • 2001-02. The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization in PLANT MOLECULAR BIOLOGY
  • 2002-11. Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat in JOURNAL OF MOLECULAR EVOLUTION
  • 2004-12. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? in BMC EVOLUTIONARY BIOLOGY
  • 1997-05. The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families in CURRENT GENETICS
  • 2003-11. The chloroplast genome of the “basal” angiosperm Calycanthus fertilis – structural and phylogenetic analyses in PLANT SYSTEMATICS AND EVOLUTION
  • 2005-04. Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species in JOURNAL OF GENETICS
  • 2006-05. Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes in THEORETICAL AND APPLIED GENETICS
  • 1996-08. Ebb and flow of the chloroplast inverted repeat in MOLECULAR GENETICS AND GENOMICS
  • 2004-06. Microsatellites: simple sequences with complex evolution in NATURE REVIEWS GENETICS
  • 2006-08. Sequence of the Tomato Chloroplast DNA and Evolutionary Comparison of Solanaceous Plastid Genomes in JOURNAL OF MOLECULAR EVOLUTION
  • 2003-04. History of chloroplast genomics in PHOTOSYNTHESIS RESEARCH
  • 2006-12. The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms in BMC GENOMICS
  • 2004-05. Abundance, Distribution, and Mutation Rates of Homopolymeric Nucleotide Runs in the Genome of Caenorhabditis elegans in JOURNAL OF MOLECULAR EVOLUTION
  • 2004-12. Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes in BMC EVOLUTIONARY BIOLOGY
  • 2005-09. Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes in PLANT MOLECULAR BIOLOGY
  • 2001-04. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes in GENOME BIOLOGY
  • 2003-06. Evolutionary Patterns of Codon Usage in the Chloroplast Gene rbcL in JOURNAL OF MOLECULAR EVOLUTION
  • 2004-04. Dating the Monocot–Dicot Divergence and the Origin of Core Eudicots Using Whole Chloroplast Genomes in JOURNAL OF MOLECULAR EVOLUTION
  • 1992-05. The chloroplast genome in PLANT MOLECULAR BIOLOGY
  • 1989-01. Heteroplasmy of chloroplast DNA in Medicago in PLANT MOLECULAR BIOLOGY
  • 2006-12. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids in BMC EVOLUTIONARY BIOLOGY
  • 1992. Use of Chloroplast DNA Rearrangements in Reconstructing Plant Phylogeny in MOLECULAR SYSTEMATICS OF PLANTS
  • 2005-03. Quantitative assessment of heteroplasmy levels in Senecio vulgaris chloroplast DNA in GENETICA
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2164-8-174

    DOI

    http://dx.doi.org/10.1186/1471-2164-8-174

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1029379402

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/17573971


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