Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese ... View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2014-12

AUTHORS

Ke Lin, Ningwen Zhang, Edouard I Severing, Harm Nijveen, Feng Cheng, Richard GF Visser, Xiaowu Wang, Dick de Ridder, Guusje Bonnema

ABSTRACT

BACKGROUND: Brassica rapa is an economically important crop species. During its long breeding history, a large number of morphotypes have been generated, including leafy vegetables such as Chinese cabbage and pakchoi, turnip tuber crops and oil crops. RESULTS: To investigate the genetic variation underlying this morphological variation, we re-sequenced, assembled and annotated the genomes of two B. rapa subspecies, turnip crops (turnip) and a rapid cycling. We then analysed the two resulting genomes together with the Chinese cabbage Chiifu reference genome to obtain an impression of the B. rapa pan-genome. The number of genes with protein-coding changes between the three genotypes was lower than that among different accessions of Arabidopsis thaliana, which can be explained by the smaller effective population size of B. rapa due to its domestication. Based on orthology to a number of non-brassica species, we estimated the date of divergence among the three B. rapa morphotypes at approximately 250,000 YA, far predating Brassica domestication (5,000-10,000 YA). CONCLUSIONS: By analysing genes unique to turnip we found evidence for copy number differences in peroxidases, pointing to a role for the phenylpropanoid biosynthesis pathway in the generation of morphological variation. The estimated date of divergence among three B. rapa morphotypes implies that prior to domestication there was already considerably divergence among B. rapa genotypes. Our study thus provides two new B. rapa reference genomes, delivers a set of computer tools to analyse the resulting pan-genome and uses these to shed light on genetic drivers behind the rich morphological variation found in B. rapa. More... »

PAGES

250

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2164-15-250

DOI

http://dx.doi.org/10.1186/1471-2164-15-250

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1023247296

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24684742


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Brassica", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosomes, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Evolution, Molecular", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Association Studies", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Markers", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Variation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genomics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genotype", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Annotation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Multigene Family", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phenotype", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands", 
            "Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lin", 
        "givenName": "Ke", 
        "id": "sg:person.01342665012.35", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342665012.35"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhang", 
        "givenName": "Ningwen", 
        "id": "sg:person.01074474033.80", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074474033.80"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Severing", 
        "givenName": "Edouard I", 
        "id": "sg:person.0605156115.24", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605156115.24"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nijveen", 
        "givenName": "Harm", 
        "id": "sg:person.01061702167.56", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061702167.56"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Vegetables and Flowers", 
          "id": "https://www.grid.ac/institutes/grid.464357.7", 
          "name": [
            "Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Cheng", 
        "givenName": "Feng", 
        "id": "sg:person.01334414011.76", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01334414011.76"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Visser", 
        "givenName": "Richard GF", 
        "id": "sg:person.07374343732.28", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07374343732.28"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Vegetables and Flowers", 
          "id": "https://www.grid.ac/institutes/grid.464357.7", 
          "name": [
            "Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Xiaowu", 
        "id": "sg:person.01111134275.07", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01111134275.07"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wageningen University & Research", 
          "id": "https://www.grid.ac/institutes/grid.4818.5", 
          "name": [
            "Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Ridder", 
        "givenName": "Dick", 
        "id": "sg:person.0611157420.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0611157420.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Vegetables and Flowers", 
          "id": "https://www.grid.ac/institutes/grid.464357.7", 
          "name": [
            "Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands", 
            "Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bonnema", 
        "givenName": "Guusje", 
        "id": "sg:person.01055163630.06", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055163630.06"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/s00122-005-1967-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002223875", 
          "https://doi.org/10.1007/s00122-005-1967-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-005-1967-y", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002223875", 
          "https://doi.org/10.1007/s00122-005-1967-y"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00122-010-1516-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009343800", 
          "https://doi.org/10.1007/s00122-010-1516-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ng.695", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009890914", 
          "https://doi.org/10.1038/ng.695"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ng.695", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009890914", 
          "https://doi.org/10.1038/ng.695"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr1014", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010775655"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bib/bbr030", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011377102"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bib/3.1.87", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013856557"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/mss075", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013930907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1155/2008/619832", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015467132"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr988", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017669524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ng.1028", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017955952", 
          "https://doi.org/10.1038/ng.1028"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00299-005-0972-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018036906", 
          "https://doi.org/10.1007/s00299-005-0972-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00299-005-0972-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018036906", 
          "https://doi.org/10.1007/s00299-005-0972-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00299-005-0972-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018036906", 
          "https://doi.org/10.1007/s00299-005-0972-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1197005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022546312"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkq973", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025608399"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.gde.2005.09.006", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025951592"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm295", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025979271"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0506758102", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026870052"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0506758102", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026870052"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1177837", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028971359"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3410/b2-85", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030400191"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0036442", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031522953"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2006-7-s1-s11", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032644700", 
          "https://doi.org/10.1186/gb-2006-7-s1-s11"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkr1079", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032911085"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.6743907", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033047816"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.109165.110", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033073106"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2229-11-136", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034730621", 
          "https://doi.org/10.1186/1471-2229-11-136"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ng.919", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035519342", 
          "https://doi.org/10.1038/ng.919"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature10414", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036465626", 
          "https://doi.org/10.1038/nature10414"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature10414", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036465626", 
          "https://doi.org/10.1038/nature10414"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature10414", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036465626", 
          "https://doi.org/10.1038/nature10414"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-1-59745-515-2_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036514364", 
          "https://doi.org/10.1007/978-1-59745-515-2_5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/978-1-59745-515-2_5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036514364", 
          "https://doi.org/10.1007/978-1-59745-515-2_5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gki937", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038285950"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/gb-2009-10-10-r111", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042025678", 
          "https://doi.org/10.1186/gb-2009-10-10-r111"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-5-59", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042217342", 
          "https://doi.org/10.1186/1471-2105-5-59"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-5-59", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042217342", 
          "https://doi.org/10.1186/1471-2105-5-59"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2164-8-154", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043644464", 
          "https://doi.org/10.1186/1471-2164-8-154"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/75556", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044135237", 
          "https://doi.org/10.1038/75556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/75556", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044135237", 
          "https://doi.org/10.1038/75556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.3531105", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045016860"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.0709888104", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045051038"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.4161/fly.19695", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046734556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/25.17.3389", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047265454"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.111.137349", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047325251"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.111.137349", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047325251"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm1020", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049687931"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.232.4756.1385", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062532548"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2014-12", 
    "datePublishedReg": "2014-12-01", 
    "description": "BACKGROUND: Brassica rapa is an economically important crop species. During its long breeding history, a large number of morphotypes have been generated, including leafy vegetables such as Chinese cabbage and pakchoi, turnip tuber crops and oil crops.\nRESULTS: To investigate the genetic variation underlying this morphological variation, we re-sequenced, assembled and annotated the genomes of two B. rapa subspecies, turnip crops (turnip) and a rapid cycling. We then analysed the two resulting genomes together with the Chinese cabbage Chiifu reference genome to obtain an impression of the B. rapa pan-genome. The number of genes with protein-coding changes between the three genotypes was lower than that among different accessions of Arabidopsis thaliana, which can be explained by the smaller effective population size of B. rapa due to its domestication. Based on orthology to a number of non-brassica species, we estimated the date of divergence among the three B. rapa morphotypes at approximately 250,000 YA, far predating Brassica domestication (5,000-10,000 YA).\nCONCLUSIONS: By analysing genes unique to turnip we found evidence for copy number differences in peroxidases, pointing to a role for the phenylpropanoid biosynthesis pathway in the generation of morphological variation. The estimated date of divergence among three B. rapa morphotypes implies that prior to domestication there was already considerably divergence among B. rapa genotypes. Our study thus provides two new B. rapa reference genomes, delivers a set of computer tools to analyse the resulting pan-genome and uses these to shed light on genetic drivers behind the rich morphological variation found in B. rapa.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/1471-2164-15-250", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1023790", 
        "issn": [
          "1471-2164"
        ], 
        "name": "BMC Genomics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "15"
      }
    ], 
    "name": "Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage", 
    "pagination": "250", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "6ec158d32781ee6501b5f66957b98eceb795eb0012773dc856d50fdb08e0259f"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "24684742"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100965258"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/1471-2164-15-250"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1023247296"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/1471-2164-15-250", 
      "https://app.dimensions.ai/details/publication/pub.1023247296"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T14:08", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000505.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2F1471-2164-15-250"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-15-250'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-15-250'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-15-250'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-15-250'


 

This table displays all metadata directly associated to this object as RDF triples.

312 TRIPLES      21 PREDICATES      81 URIs      34 LITERALS      22 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/1471-2164-15-250 schema:about N1281e8ba23ea469cb89df656885aad14
2 N136e945c188d47038c6b273b291a19db
3 N2065bccb1f9b4f0e930e5401c9036a79
4 N28e2638caf9849e087f3c435de6aeb9a
5 N582ce0ac747543f18769ca2679a61a52
6 N76ec0f769b1047ca9620d5ff51938d95
7 N8092020967c3406590450b1c103b2aac
8 N8ce342522dac4e6da403694f57c317fb
9 Nadf387e516754950a84f2792b633ceee
10 Naf11eaf18b9644169fb37b4acaacc58a
11 Ndb6dcf36efa641709da3feae9ca4ae56
12 Nf86e4e23e1744ff4a1b82ed71fd6496f
13 Nf997ded076204ec7a03daa15512caff4
14 anzsrc-for:06
15 anzsrc-for:0604
16 schema:author Nfac817be8e0f42beb1d1427671669096
17 schema:citation sg:pub.10.1007/978-1-59745-515-2_5
18 sg:pub.10.1007/s00122-005-1967-y
19 sg:pub.10.1007/s00122-010-1516-1
20 sg:pub.10.1007/s00299-005-0972-6
21 sg:pub.10.1038/75556
22 sg:pub.10.1038/nature10414
23 sg:pub.10.1038/ng.1028
24 sg:pub.10.1038/ng.695
25 sg:pub.10.1038/ng.919
26 sg:pub.10.1186/1471-2105-5-59
27 sg:pub.10.1186/1471-2164-8-154
28 sg:pub.10.1186/1471-2229-11-136
29 sg:pub.10.1186/gb-2006-7-s1-s11
30 sg:pub.10.1186/gb-2009-10-10-r111
31 https://doi.org/10.1016/j.gde.2005.09.006
32 https://doi.org/10.1073/pnas.0506758102
33 https://doi.org/10.1073/pnas.0709888104
34 https://doi.org/10.1093/bib/3.1.87
35 https://doi.org/10.1093/bib/bbr030
36 https://doi.org/10.1093/bioinformatics/btm295
37 https://doi.org/10.1093/molbev/mss075
38 https://doi.org/10.1093/nar/25.17.3389
39 https://doi.org/10.1093/nar/gki937
40 https://doi.org/10.1093/nar/gkm1020
41 https://doi.org/10.1093/nar/gkq973
42 https://doi.org/10.1093/nar/gkr1014
43 https://doi.org/10.1093/nar/gkr1079
44 https://doi.org/10.1093/nar/gkr988
45 https://doi.org/10.1101/gr.109165.110
46 https://doi.org/10.1101/gr.3531105
47 https://doi.org/10.1101/gr.6743907
48 https://doi.org/10.1126/science.1177837
49 https://doi.org/10.1126/science.1197005
50 https://doi.org/10.1126/science.232.4756.1385
51 https://doi.org/10.1155/2008/619832
52 https://doi.org/10.1371/journal.pone.0036442
53 https://doi.org/10.1534/genetics.111.137349
54 https://doi.org/10.3410/b2-85
55 https://doi.org/10.4161/fly.19695
56 schema:datePublished 2014-12
57 schema:datePublishedReg 2014-12-01
58 schema:description BACKGROUND: Brassica rapa is an economically important crop species. During its long breeding history, a large number of morphotypes have been generated, including leafy vegetables such as Chinese cabbage and pakchoi, turnip tuber crops and oil crops. RESULTS: To investigate the genetic variation underlying this morphological variation, we re-sequenced, assembled and annotated the genomes of two B. rapa subspecies, turnip crops (turnip) and a rapid cycling. We then analysed the two resulting genomes together with the Chinese cabbage Chiifu reference genome to obtain an impression of the B. rapa pan-genome. The number of genes with protein-coding changes between the three genotypes was lower than that among different accessions of Arabidopsis thaliana, which can be explained by the smaller effective population size of B. rapa due to its domestication. Based on orthology to a number of non-brassica species, we estimated the date of divergence among the three B. rapa morphotypes at approximately 250,000 YA, far predating Brassica domestication (5,000-10,000 YA). CONCLUSIONS: By analysing genes unique to turnip we found evidence for copy number differences in peroxidases, pointing to a role for the phenylpropanoid biosynthesis pathway in the generation of morphological variation. The estimated date of divergence among three B. rapa morphotypes implies that prior to domestication there was already considerably divergence among B. rapa genotypes. Our study thus provides two new B. rapa reference genomes, delivers a set of computer tools to analyse the resulting pan-genome and uses these to shed light on genetic drivers behind the rich morphological variation found in B. rapa.
59 schema:genre research_article
60 schema:inLanguage en
61 schema:isAccessibleForFree true
62 schema:isPartOf N3281a310edda433181b45fdd51b871f5
63 Ne89cc9e69b774a9ea2b6c6f6f5ea0e80
64 sg:journal.1023790
65 schema:name Beyond genomic variation - comparison and functional annotation of three Brassica rapagenomes: a turnip, a rapid cycling and a Chinese cabbage
66 schema:pagination 250
67 schema:productId N31fef60a20c04765b47ad030a42efd4d
68 N626d5e0ee3654f778847b6530ad0d1a0
69 N776a11002ef8484582f8cb5fdd9bf276
70 N82a5994ec8c74e42af9262e31e9002f3
71 Nea82300e743d48859be10d523007833d
72 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023247296
73 https://doi.org/10.1186/1471-2164-15-250
74 schema:sdDatePublished 2019-04-10T14:08
75 schema:sdLicense https://scigraph.springernature.com/explorer/license/
76 schema:sdPublisher N3bcf0b6c030c447db567d1ae0b88cced
77 schema:url http://link.springer.com/10.1186%2F1471-2164-15-250
78 sgo:license sg:explorer/license/
79 sgo:sdDataset articles
80 rdf:type schema:ScholarlyArticle
81 N1281e8ba23ea469cb89df656885aad14 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
82 schema:name Genome, Plant
83 rdf:type schema:DefinedTerm
84 N136e945c188d47038c6b273b291a19db schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
85 schema:name Genomics
86 rdf:type schema:DefinedTerm
87 N2065bccb1f9b4f0e930e5401c9036a79 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
88 schema:name Phenotype
89 rdf:type schema:DefinedTerm
90 N27d21dd41bf54d4599a28244339eff5c rdf:first sg:person.0611157420.02
91 rdf:rest Ne95135f9e9a742f99c33ca15937ca9da
92 N28e2638caf9849e087f3c435de6aeb9a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
93 schema:name Genetic Variation
94 rdf:type schema:DefinedTerm
95 N31fef60a20c04765b47ad030a42efd4d schema:name doi
96 schema:value 10.1186/1471-2164-15-250
97 rdf:type schema:PropertyValue
98 N3281a310edda433181b45fdd51b871f5 schema:issueNumber 1
99 rdf:type schema:PublicationIssue
100 N36aae337a84d4924b1772b97be5caf9a rdf:first sg:person.01334414011.76
101 rdf:rest Ncb10475e6d3d4a3bbfbdb52631fb88b9
102 N3bcf0b6c030c447db567d1ae0b88cced schema:name Springer Nature - SN SciGraph project
103 rdf:type schema:Organization
104 N582ce0ac747543f18769ca2679a61a52 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
105 schema:name Multigene Family
106 rdf:type schema:DefinedTerm
107 N5efbf26bc9ad4e17a1ca4a8159a6b626 rdf:first sg:person.01074474033.80
108 rdf:rest Nf9865aa8208443899954a0d9e01169d8
109 N626d5e0ee3654f778847b6530ad0d1a0 schema:name readcube_id
110 schema:value 6ec158d32781ee6501b5f66957b98eceb795eb0012773dc856d50fdb08e0259f
111 rdf:type schema:PropertyValue
112 N6f5c6d9ca3eb4b65ab9b6d8bbd24d715 rdf:first sg:person.01061702167.56
113 rdf:rest N36aae337a84d4924b1772b97be5caf9a
114 N76ec0f769b1047ca9620d5ff51938d95 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
115 schema:name Computational Biology
116 rdf:type schema:DefinedTerm
117 N776a11002ef8484582f8cb5fdd9bf276 schema:name pubmed_id
118 schema:value 24684742
119 rdf:type schema:PropertyValue
120 N8092020967c3406590450b1c103b2aac schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
121 schema:name Genetic Markers
122 rdf:type schema:DefinedTerm
123 N82a5994ec8c74e42af9262e31e9002f3 schema:name dimensions_id
124 schema:value pub.1023247296
125 rdf:type schema:PropertyValue
126 N8ce342522dac4e6da403694f57c317fb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
127 schema:name Genetic Association Studies
128 rdf:type schema:DefinedTerm
129 Nadf387e516754950a84f2792b633ceee schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
130 schema:name Chromosomes, Plant
131 rdf:type schema:DefinedTerm
132 Naf11eaf18b9644169fb37b4acaacc58a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
133 schema:name Genotype
134 rdf:type schema:DefinedTerm
135 Nca4cb31b774042dba9a8b00bb8c00aaa rdf:first sg:person.01111134275.07
136 rdf:rest N27d21dd41bf54d4599a28244339eff5c
137 Ncb10475e6d3d4a3bbfbdb52631fb88b9 rdf:first sg:person.07374343732.28
138 rdf:rest Nca4cb31b774042dba9a8b00bb8c00aaa
139 Ndb6dcf36efa641709da3feae9ca4ae56 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
140 schema:name Brassica
141 rdf:type schema:DefinedTerm
142 Ne89cc9e69b774a9ea2b6c6f6f5ea0e80 schema:volumeNumber 15
143 rdf:type schema:PublicationVolume
144 Ne95135f9e9a742f99c33ca15937ca9da rdf:first sg:person.01055163630.06
145 rdf:rest rdf:nil
146 Nea82300e743d48859be10d523007833d schema:name nlm_unique_id
147 schema:value 100965258
148 rdf:type schema:PropertyValue
149 Nf86e4e23e1744ff4a1b82ed71fd6496f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
150 schema:name Molecular Sequence Annotation
151 rdf:type schema:DefinedTerm
152 Nf9865aa8208443899954a0d9e01169d8 rdf:first sg:person.0605156115.24
153 rdf:rest N6f5c6d9ca3eb4b65ab9b6d8bbd24d715
154 Nf997ded076204ec7a03daa15512caff4 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
155 schema:name Evolution, Molecular
156 rdf:type schema:DefinedTerm
157 Nfac817be8e0f42beb1d1427671669096 rdf:first sg:person.01342665012.35
158 rdf:rest N5efbf26bc9ad4e17a1ca4a8159a6b626
159 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
160 schema:name Biological Sciences
161 rdf:type schema:DefinedTerm
162 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
163 schema:name Genetics
164 rdf:type schema:DefinedTerm
165 sg:journal.1023790 schema:issn 1471-2164
166 schema:name BMC Genomics
167 rdf:type schema:Periodical
168 sg:person.01055163630.06 schema:affiliation https://www.grid.ac/institutes/grid.464357.7
169 schema:familyName Bonnema
170 schema:givenName Guusje
171 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055163630.06
172 rdf:type schema:Person
173 sg:person.01061702167.56 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
174 schema:familyName Nijveen
175 schema:givenName Harm
176 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01061702167.56
177 rdf:type schema:Person
178 sg:person.01074474033.80 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
179 schema:familyName Zhang
180 schema:givenName Ningwen
181 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01074474033.80
182 rdf:type schema:Person
183 sg:person.01111134275.07 schema:affiliation https://www.grid.ac/institutes/grid.464357.7
184 schema:familyName Wang
185 schema:givenName Xiaowu
186 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01111134275.07
187 rdf:type schema:Person
188 sg:person.01334414011.76 schema:affiliation https://www.grid.ac/institutes/grid.464357.7
189 schema:familyName Cheng
190 schema:givenName Feng
191 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01334414011.76
192 rdf:type schema:Person
193 sg:person.01342665012.35 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
194 schema:familyName Lin
195 schema:givenName Ke
196 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342665012.35
197 rdf:type schema:Person
198 sg:person.0605156115.24 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
199 schema:familyName Severing
200 schema:givenName Edouard I
201 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0605156115.24
202 rdf:type schema:Person
203 sg:person.0611157420.02 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
204 schema:familyName de Ridder
205 schema:givenName Dick
206 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0611157420.02
207 rdf:type schema:Person
208 sg:person.07374343732.28 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
209 schema:familyName Visser
210 schema:givenName Richard GF
211 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07374343732.28
212 rdf:type schema:Person
213 sg:pub.10.1007/978-1-59745-515-2_5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036514364
214 https://doi.org/10.1007/978-1-59745-515-2_5
215 rdf:type schema:CreativeWork
216 sg:pub.10.1007/s00122-005-1967-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1002223875
217 https://doi.org/10.1007/s00122-005-1967-y
218 rdf:type schema:CreativeWork
219 sg:pub.10.1007/s00122-010-1516-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009343800
220 https://doi.org/10.1007/s00122-010-1516-1
221 rdf:type schema:CreativeWork
222 sg:pub.10.1007/s00299-005-0972-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018036906
223 https://doi.org/10.1007/s00299-005-0972-6
224 rdf:type schema:CreativeWork
225 sg:pub.10.1038/75556 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044135237
226 https://doi.org/10.1038/75556
227 rdf:type schema:CreativeWork
228 sg:pub.10.1038/nature10414 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036465626
229 https://doi.org/10.1038/nature10414
230 rdf:type schema:CreativeWork
231 sg:pub.10.1038/ng.1028 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017955952
232 https://doi.org/10.1038/ng.1028
233 rdf:type schema:CreativeWork
234 sg:pub.10.1038/ng.695 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009890914
235 https://doi.org/10.1038/ng.695
236 rdf:type schema:CreativeWork
237 sg:pub.10.1038/ng.919 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035519342
238 https://doi.org/10.1038/ng.919
239 rdf:type schema:CreativeWork
240 sg:pub.10.1186/1471-2105-5-59 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042217342
241 https://doi.org/10.1186/1471-2105-5-59
242 rdf:type schema:CreativeWork
243 sg:pub.10.1186/1471-2164-8-154 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043644464
244 https://doi.org/10.1186/1471-2164-8-154
245 rdf:type schema:CreativeWork
246 sg:pub.10.1186/1471-2229-11-136 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034730621
247 https://doi.org/10.1186/1471-2229-11-136
248 rdf:type schema:CreativeWork
249 sg:pub.10.1186/gb-2006-7-s1-s11 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032644700
250 https://doi.org/10.1186/gb-2006-7-s1-s11
251 rdf:type schema:CreativeWork
252 sg:pub.10.1186/gb-2009-10-10-r111 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042025678
253 https://doi.org/10.1186/gb-2009-10-10-r111
254 rdf:type schema:CreativeWork
255 https://doi.org/10.1016/j.gde.2005.09.006 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025951592
256 rdf:type schema:CreativeWork
257 https://doi.org/10.1073/pnas.0506758102 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026870052
258 rdf:type schema:CreativeWork
259 https://doi.org/10.1073/pnas.0709888104 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045051038
260 rdf:type schema:CreativeWork
261 https://doi.org/10.1093/bib/3.1.87 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013856557
262 rdf:type schema:CreativeWork
263 https://doi.org/10.1093/bib/bbr030 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011377102
264 rdf:type schema:CreativeWork
265 https://doi.org/10.1093/bioinformatics/btm295 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025979271
266 rdf:type schema:CreativeWork
267 https://doi.org/10.1093/molbev/mss075 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013930907
268 rdf:type schema:CreativeWork
269 https://doi.org/10.1093/nar/25.17.3389 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047265454
270 rdf:type schema:CreativeWork
271 https://doi.org/10.1093/nar/gki937 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038285950
272 rdf:type schema:CreativeWork
273 https://doi.org/10.1093/nar/gkm1020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049687931
274 rdf:type schema:CreativeWork
275 https://doi.org/10.1093/nar/gkq973 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025608399
276 rdf:type schema:CreativeWork
277 https://doi.org/10.1093/nar/gkr1014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010775655
278 rdf:type schema:CreativeWork
279 https://doi.org/10.1093/nar/gkr1079 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032911085
280 rdf:type schema:CreativeWork
281 https://doi.org/10.1093/nar/gkr988 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017669524
282 rdf:type schema:CreativeWork
283 https://doi.org/10.1101/gr.109165.110 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033073106
284 rdf:type schema:CreativeWork
285 https://doi.org/10.1101/gr.3531105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045016860
286 rdf:type schema:CreativeWork
287 https://doi.org/10.1101/gr.6743907 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033047816
288 rdf:type schema:CreativeWork
289 https://doi.org/10.1126/science.1177837 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028971359
290 rdf:type schema:CreativeWork
291 https://doi.org/10.1126/science.1197005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022546312
292 rdf:type schema:CreativeWork
293 https://doi.org/10.1126/science.232.4756.1385 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062532548
294 rdf:type schema:CreativeWork
295 https://doi.org/10.1155/2008/619832 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015467132
296 rdf:type schema:CreativeWork
297 https://doi.org/10.1371/journal.pone.0036442 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031522953
298 rdf:type schema:CreativeWork
299 https://doi.org/10.1534/genetics.111.137349 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047325251
300 rdf:type schema:CreativeWork
301 https://doi.org/10.3410/b2-85 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030400191
302 rdf:type schema:CreativeWork
303 https://doi.org/10.4161/fly.19695 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046734556
304 rdf:type schema:CreativeWork
305 https://www.grid.ac/institutes/grid.464357.7 schema:alternateName Institute of Vegetables and Flowers
306 schema:name Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
307 Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands
308 rdf:type schema:Organization
309 https://www.grid.ac/institutes/grid.4818.5 schema:alternateName Wageningen University & Research
310 schema:name Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands
311 Laboratory of Plant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands
312 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...