De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special ... View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-12

AUTHORS

Peter JP Croucher, Michael S Brewer, Christopher J Winchell, Geoff S Oxford, Rosemary G Gillespie

ABSTRACT

BACKGROUND: A number of spider species within the family Theridiidae exhibit a dramatic abdominal (opisthosomal) color polymorphism. The polymorphism is inherited in a broadly Mendelian fashion and in some species consists of dozens of discrete morphs that are convergent across taxa and populations. Few genomic resources exist for spiders. Here, as a first necessary step towards identifying the genetic basis for this trait we present the near complete transcriptomes of two species: the Hawaiian happy-face spider Theridion grallator and Theridion californicum. We mined the gene complement for pigment-pathway genes and examined differential expression (DE) between morphs that are unpatterned (plain yellow) and patterned (yellow with superimposed patches of red, white or very dark brown). RESULTS: By deep sequencing both RNA-seq and normalized cDNA libraries from pooled specimens of each species we were able to assemble a comprehensive gene set for both species that we estimate to be 98-99% complete. It is likely that these species express more than 20,000 protein-coding genes, perhaps 4.5% (ca. 870) of which might be unique to spiders. Mining for pigment-associated Drosophila melanogaster genes indicated the presence of all ommochrome pathway genes and most pteridine pathway genes and DE analyses further indicate a possible role for the pteridine pathway in theridiid color patterning. CONCLUSIONS: Based upon our estimates, T. grallator and T. californicum express a large inventory of protein-coding genes. Our comprehensive assembly illustrates the continuing value of sequencing normalized cDNA libraries in addition to RNA-seq in order to generate a reference transcriptome for non-model species. The identification of pteridine-related genes and their possible involvement in color patterning is a novel finding in spiders and one that suggests a biochemical link between guanine deposits and the pigments exhibited by these species. More... »

PAGES

862

References to SciGraph publications

  • 2010-12. Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees in FRONTIERS IN ZOOLOGY
  • 2009-01. RNA-Seq: a revolutionary tool for transcriptomics in NATURE REVIEWS GENETICS
  • 2006-12. Mining housekeeping genes with a Naive Bayes classifier in BMC GENOMICS
  • 2009-03. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome in GENOME BIOLOGY
  • 1987. Coloration and Chromes in ECOPHYSIOLOGY OF SPIDERS
  • 2003-02. The clot gene of Drosophila melanogaster encodes a conserved member of the Thioredoxin-like protein superfamily in MOLECULAR GENETICS AND GENOMICS
  • 1996-03. Genetics of a colour polymorphism in Theridion grallator (Araneae: Theridiidae), the Hawaiian happy-face spider, from Greater Maui in HEREDITY
  • 2000-02. What transcripts are found in a human cell? in GENOME BIOLOGY
  • 2011-11. The genome of Tetranychus urticae reveals herbivorous pest adaptations in NATURE
  • 2005-02. Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae in GENOME BIOLOGY
  • 1987. Nematode Parasites of Spiders in ECOPHYSIOLOGY OF SPIDERS
  • 2011-12. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome in BMC BIOINFORMATICS
  • 1998-12. Heme oxygenase: Protective gene or Trojan horse in NATURE MEDICINE
  • 2004-12. The colonization of land by animals: molecular phylogeny and divergence times among arthropods in BMC BIOLOGY
  • 2010-03. A scaling normalization method for differential expression analysis of RNA-seq data in GENOME BIOLOGY
  • 1996-03. Quantum shifts in the genetic control of a colour polymorphism in Theridion grallator (Araneae: Theridiidae), the Hawaiian happy-face spider in HEREDITY
  • 1996-03. The effects of genetic background on the island-specific control of a colour polymorphism in Theridion grallator (Araneae: Theridiidae), the Hawaiian happy-face spider in HEREDITY
  • 1995-04. Heme biosynthesis: Biochemistry, molecular biology, and relationship to disease in JOURNAL OF BIOENERGETICS AND BIOMEMBRANES
  • 2009-12. HaMStR: Profile hidden markov model based search for orthologs in ESTs in BMC EVOLUTIONARY BIOLOGY
  • 1983-12. Genetics of colour and its regulation during development in the spider Enoplognatha ovata (Clerck) (Araneae: Theridiidae) in HEREDITY
  • 2011-07. Full-length transcriptome assembly from RNA-Seq data without a reference genome in NATURE BIOTECHNOLOGY
  • 1975-06. Micromatabilin, a new biliverdin conjugate in the spider,Micromata rosea (Sparassidae) in JOURNAL OF COMPARATIVE PHYSIOLOGY A
  • 2007-10. Melanosomes — dark organelles enlighten endosomal membrane transport in NATURE REVIEWS MOLECULAR CELL BIOLOGY
  • 2000-05. Sub-cellular Localisation of the White/Scarlet ABC Transporter to Pigment Granule Membranes Within the Compound Eye of Drosophila Melanogaster in GENETICA
  • 1977-12. Developmental patterns of 3-hydroxykynurenine accumulation in white and various other eye color mutants of Drosophila melanogaster in BIOCHEMICAL GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2164-14-862

    DOI

    http://dx.doi.org/10.1186/1471-2164-14-862

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1014964177

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/24314324


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Animals", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Biosynthetic Pathways", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Cluster Analysis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Evolution, Molecular", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Gene Library", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Multigene Family", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phenothiazines", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Phylogeny", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Pigmentation", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Pigments, Biological", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Pteridines", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Spiders", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Transcriptome", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "University of California, Berkeley", 
              "id": "https://www.grid.ac/institutes/grid.47840.3f", 
              "name": [
                "Department of Environmental Science, Policy and Management, University of California, 94720-3114, Berkeley, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Croucher", 
            "givenName": "Peter JP", 
            "id": "sg:person.015160067334.49", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015160067334.49"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Berkeley", 
              "id": "https://www.grid.ac/institutes/grid.47840.3f", 
              "name": [
                "Department of Environmental Science, Policy and Management, University of California, 94720-3114, Berkeley, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Brewer", 
            "givenName": "Michael S", 
            "id": "sg:person.0656430717.54", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0656430717.54"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Berkeley", 
              "id": "https://www.grid.ac/institutes/grid.47840.3f", 
              "name": [
                "Department of Molecular and Cell Biology, University of California, 94720-3200, Berkeley, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Winchell", 
            "givenName": "Christopher J", 
            "id": "sg:person.0711731405.34", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0711731405.34"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of York", 
              "id": "https://www.grid.ac/institutes/grid.5685.e", 
              "name": [
                "Department of Biology (E019), University of York, Wentworth Way, YO10 5DD, Heslington, York, UK"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Oxford", 
            "givenName": "Geoff S", 
            "id": "sg:person.01046162473.37", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046162473.37"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "University of California, Berkeley", 
              "id": "https://www.grid.ac/institutes/grid.47840.3f", 
              "name": [
                "Department of Environmental Science, Policy and Management, University of California, 94720-3114, Berkeley, CA, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Gillespie", 
            "givenName": "Rosemary G", 
            "id": "sg:person.0630234030.66", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630234030.66"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1038/hdy.1983.74", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000926854", 
              "https://doi.org/10.1038/hdy.1983.74"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1983.74", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000926854", 
              "https://doi.org/10.1038/hdy.1983.74"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/30.7.1575", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001067672"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1083/jcb.200610081", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001739367"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1083/jcb.200610081", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001739367"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-3-642-71552-5_2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003699883", 
              "https://doi.org/10.1007/978-3-642-71552-5_2"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature10640", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1004016407", 
              "https://doi.org/10.1038/nature10640"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrm2258", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1005579140", 
              "https://doi.org/10.1038/nrm2258"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti610", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006001436"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1641/0006-3568(2001)051[0521:poesoc]2.0.co;2", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006207729"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.39", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006822479", 
              "https://doi.org/10.1038/hdy.1996.39"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.39", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006822479", 
              "https://doi.org/10.1038/hdy.1996.39"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1042/bj20060424", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007050331"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1042/bj20060424", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1007050331"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.38", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008239024", 
              "https://doi.org/10.1038/hdy.1996.38"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.38", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008239024", 
              "https://doi.org/10.1038/hdy.1996.38"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00706130", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008381177", 
              "https://doi.org/10.1007/bf00706130"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00706130", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008381177", 
              "https://doi.org/10.1007/bf00706130"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1742-9994-7-10", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009148564", 
              "https://doi.org/10.1186/1742-9994-7-10"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-2583.2005.00551.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009231840"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0076-6879(96)66026-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009287635"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1095-8312.2011.01734.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009721121"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1074/jbc.m412236200", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009735589"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msn067", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009887615"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/arch.940150406", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010829796"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1083/jcb.201102021", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011932522"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0300-9629(72)90448-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012257499"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0300-9629(72)90448-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012257499"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1741-7007-2-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012314942", 
              "https://doi.org/10.1186/1741-7007-2-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.37", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012511590", 
              "https://doi.org/10.1038/hdy.1996.37"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/hdy.1996.37", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012511590", 
              "https://doi.org/10.1038/hdy.1996.37"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0965-1748(99)00002-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015650936"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btn615", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015664076"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt.1883", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015803168", 
              "https://doi.org/10.1038/nbt.1883"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2108/zsj.22.723", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016431859"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.2108/zsj.22.723", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016431859"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/28.1.27", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017305614"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btq217", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018999537"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1080/10635150701472164", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019116948"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.287.5461.2185", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019737566"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.bbrc.2005.08.020", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020095984"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.bbrc.2005.08.020", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020095984"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1523/jneurosci.0995-05.2005", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021405591"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-12-323", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021902674", 
              "https://doi.org/10.1186/1471-2105-12-323"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/3947", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022727323", 
              "https://doi.org/10.1038/3947"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/3947", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022727323", 
              "https://doi.org/10.1038/3947"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkn176", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022937830"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btp616", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023247882"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g01-139", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023704765"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-294x.1998.00309.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023919645"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-294x.1998.00309.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023919645"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.ento.43.1.619", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024556933"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1159/000248649", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024619322"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1023/a:1004115718597", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024656745", 
              "https://doi.org/10.1023/a:1004115718597"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1074/jbc.m009462200", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024871051"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.0105-2896.2004.00116.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026197535"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1098/rstb.2008.0212", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027071690"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1242/jeb.014043", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027245030"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tice.2009.05.002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027860990"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.jip.2003.08.004", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028201139"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.jip.2003.08.004", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028201139"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0065-2806(08)60130-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028559127"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0065-2806(08)60130-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028559127"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0065-2806(08)60130-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028559127"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tree.2006.10.005", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029751771"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.dci.2007.03.012", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030091884"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00484496", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030556501", 
              "https://doi.org/10.1007/bf00484496"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00484496", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030556501", 
              "https://doi.org/10.1007/bf00484496"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg2484", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1030687647", 
              "https://doi.org/10.1038/nrg2484"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1525-142x.2005.05036.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031964808"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1525-142x.2005.05036.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031964808"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.5969107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034259503"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1558-5646.2012.01653.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035071295"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-7-277", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036232051", 
              "https://doi.org/10.1186/1471-2164-7-277"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btm453", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036891129"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msq192", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037063166"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026334", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037148423"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1091/mbc.e06-05-0379", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037227551"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02110029", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037855877", 
              "https://doi.org/10.1007/bf02110029"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02110029", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037855877", 
              "https://doi.org/10.1007/bf02110029"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1042/bj3470001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038020096"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1042/bj3470001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038020096"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btp450", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039284641"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.10.4.511", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039597681"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1095-8312.2008.01117.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039974295"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s1534-5807(02)00267-8", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040243989"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.ympev.2010.04.024", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043956431"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkq1058", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044687013"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0005-2736(99)00064-4", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1044803018"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0401926101", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045014107"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2148-9-157", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045090576", 
              "https://doi.org/10.1186/1471-2148-9-157"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btl446", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046470836"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1146/annurev.ecolsys.38.091206.095728", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046707801"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-294x.2010.04941.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046931407"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-294x.2010.04941.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046931407"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/beheco/arh062", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048893500"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1074/jbc.m910307199", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049105611"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-3-642-71552-5_22", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049225344", 
              "https://doi.org/10.1007/978-3-642-71552-5_22"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2009-10-3-r25", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049583368", 
              "https://doi.org/10.1186/gb-2009-10-3-r25"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2010-11-3-r25", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050509557", 
              "https://doi.org/10.1186/gb-2010-11-3-r25"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/btg412", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051607942"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1098/rsbl.2011.0704", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1051614367"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.200801", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052043933"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g82-002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052307299"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2005-6-2-r11", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053488500", 
              "https://doi.org/10.1186/gb-2005-6-2-r11"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1017/s0016672300029402", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053753071"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1017/s0016672300029402", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1053753071"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1042/0264-6021:3470001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1056714628"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00438-002-0792-0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1075238739", 
              "https://doi.org/10.1007/s00438-002-0792-0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2000-1-1-reports031", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1085155451", 
              "https://doi.org/10.1186/gb-2000-1-1-reports031"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2013-12", 
        "datePublishedReg": "2013-12-01", 
        "description": "BACKGROUND: A number of spider species within the family Theridiidae exhibit a dramatic abdominal (opisthosomal) color polymorphism. The polymorphism is inherited in a broadly Mendelian fashion and in some species consists of dozens of discrete morphs that are convergent across taxa and populations. Few genomic resources exist for spiders. Here, as a first necessary step towards identifying the genetic basis for this trait we present the near complete transcriptomes of two species: the Hawaiian happy-face spider Theridion grallator and Theridion californicum. We mined the gene complement for pigment-pathway genes and examined differential expression (DE) between morphs that are unpatterned (plain yellow) and patterned (yellow with superimposed patches of red, white or very dark brown).\nRESULTS: By deep sequencing both RNA-seq and normalized cDNA libraries from pooled specimens of each species we were able to assemble a comprehensive gene set for both species that we estimate to be 98-99% complete. It is likely that these species express more than 20,000 protein-coding genes, perhaps 4.5% (ca. 870) of which might be unique to spiders. Mining for pigment-associated Drosophila melanogaster genes indicated the presence of all ommochrome pathway genes and most pteridine pathway genes and DE analyses further indicate a possible role for the pteridine pathway in theridiid color patterning.\nCONCLUSIONS: Based upon our estimates, T. grallator and T. californicum express a large inventory of protein-coding genes. Our comprehensive assembly illustrates the continuing value of sequencing normalized cDNA libraries in addition to RNA-seq in order to generate a reference transcriptome for non-model species. The identification of pteridine-related genes and their possible involvement in color patterning is a novel finding in spiders and one that suggests a biochemical link between guanine deposits and the pigments exhibited by these species.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/1471-2164-14-862", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.3103074", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1023790", 
            "issn": [
              "1471-2164"
            ], 
            "name": "BMC Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "14"
          }
        ], 
        "name": "De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes", 
        "pagination": "862", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "474b72fc42976a42c82385746c3f99186e39f9e13a75c79ac0728243762e1e47"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "24314324"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "100965258"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/1471-2164-14-862"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1014964177"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/1471-2164-14-862", 
          "https://app.dimensions.ai/details/publication/pub.1014964177"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T14:16", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000549.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2F1471-2164-14-862"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-862'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-862'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-862'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-862'


     

    This table displays all metadata directly associated to this object as RDF triples.

    446 TRIPLES      21 PREDICATES      131 URIs      34 LITERALS      22 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/1471-2164-14-862 schema:about N1804c962a27e40e58c0b7f6c8d50c278
    2 N2385be40b2e840b087032a51849b8c57
    3 N2aaae7ebdb9e49089d5af9cf8b2332af
    4 N2b68bf6795d24d4c90c26ae70da2134f
    5 N3cf0dce51a854f2fbdbe7716394a8026
    6 N40fd9a5557b7458e82e6210d388f93c2
    7 N58dbcfce6f4f4ba5b0e771862d0e4d69
    8 N7bc58a849d194a4f9ea71923c622bf73
    9 N85e127fe6d054524937d2357d6a79462
    10 N8688747cacab4504896ff098af70ee7b
    11 Nb07fb1f46d1d46d997b6950458752c60
    12 Nd49bd8ebf8794bb68c8bb3852a776b5d
    13 Nef19ee2439694fc0b7587e8d3ee58eea
    14 anzsrc-for:06
    15 anzsrc-for:0604
    16 schema:author Nb4fe0cd7eca24c4d9ba602a4be266dbb
    17 schema:citation sg:pub.10.1007/978-3-642-71552-5_2
    18 sg:pub.10.1007/978-3-642-71552-5_22
    19 sg:pub.10.1007/bf00484496
    20 sg:pub.10.1007/bf00706130
    21 sg:pub.10.1007/bf02110029
    22 sg:pub.10.1007/s00438-002-0792-0
    23 sg:pub.10.1023/a:1004115718597
    24 sg:pub.10.1038/3947
    25 sg:pub.10.1038/hdy.1983.74
    26 sg:pub.10.1038/hdy.1996.37
    27 sg:pub.10.1038/hdy.1996.38
    28 sg:pub.10.1038/hdy.1996.39
    29 sg:pub.10.1038/nature10640
    30 sg:pub.10.1038/nbt.1883
    31 sg:pub.10.1038/nrg2484
    32 sg:pub.10.1038/nrm2258
    33 sg:pub.10.1186/1471-2105-12-323
    34 sg:pub.10.1186/1471-2148-9-157
    35 sg:pub.10.1186/1471-2164-7-277
    36 sg:pub.10.1186/1741-7007-2-1
    37 sg:pub.10.1186/1742-9994-7-10
    38 sg:pub.10.1186/gb-2000-1-1-reports031
    39 sg:pub.10.1186/gb-2005-6-2-r11
    40 sg:pub.10.1186/gb-2009-10-3-r25
    41 sg:pub.10.1186/gb-2010-11-3-r25
    42 https://doi.org/10.1002/arch.940150406
    43 https://doi.org/10.1016/0300-9629(72)90448-3
    44 https://doi.org/10.1016/j.bbrc.2005.08.020
    45 https://doi.org/10.1016/j.dci.2007.03.012
    46 https://doi.org/10.1016/j.jip.2003.08.004
    47 https://doi.org/10.1016/j.tice.2009.05.002
    48 https://doi.org/10.1016/j.tree.2006.10.005
    49 https://doi.org/10.1016/j.ympev.2010.04.024
    50 https://doi.org/10.1016/s0005-2736(99)00064-4
    51 https://doi.org/10.1016/s0065-2806(08)60130-7
    52 https://doi.org/10.1016/s0076-6879(96)66026-1
    53 https://doi.org/10.1016/s0965-1748(99)00002-8
    54 https://doi.org/10.1016/s1534-5807(02)00267-8
    55 https://doi.org/10.1017/s0016672300029402
    56 https://doi.org/10.1042/0264-6021:3470001
    57 https://doi.org/10.1042/bj20060424
    58 https://doi.org/10.1042/bj3470001
    59 https://doi.org/10.1046/j.1365-294x.1998.00309.x
    60 https://doi.org/10.1073/pnas.0401926101
    61 https://doi.org/10.1074/jbc.m009462200
    62 https://doi.org/10.1074/jbc.m412236200
    63 https://doi.org/10.1074/jbc.m910307199
    64 https://doi.org/10.1080/10635150701472164
    65 https://doi.org/10.1083/jcb.200610081
    66 https://doi.org/10.1083/jcb.201102021
    67 https://doi.org/10.1091/mbc.e06-05-0379
    68 https://doi.org/10.1093/beheco/arh062
    69 https://doi.org/10.1093/bioinformatics/btg412
    70 https://doi.org/10.1093/bioinformatics/bti610
    71 https://doi.org/10.1093/bioinformatics/btl446
    72 https://doi.org/10.1093/bioinformatics/btm453
    73 https://doi.org/10.1093/bioinformatics/btn615
    74 https://doi.org/10.1093/bioinformatics/btp450
    75 https://doi.org/10.1093/bioinformatics/btp616
    76 https://doi.org/10.1093/bioinformatics/btq217
    77 https://doi.org/10.1093/molbev/msn067
    78 https://doi.org/10.1093/molbev/msq192
    79 https://doi.org/10.1093/nar/28.1.27
    80 https://doi.org/10.1093/nar/30.7.1575
    81 https://doi.org/10.1093/nar/gkn176
    82 https://doi.org/10.1093/nar/gkq1058
    83 https://doi.org/10.1093/oxfordjournals.molbev.a026334
    84 https://doi.org/10.1098/rsbl.2011.0704
    85 https://doi.org/10.1098/rstb.2008.0212
    86 https://doi.org/10.1101/gr.10.4.511
    87 https://doi.org/10.1101/gr.200801
    88 https://doi.org/10.1101/gr.5969107
    89 https://doi.org/10.1111/j.0105-2896.2004.00116.x
    90 https://doi.org/10.1111/j.1095-8312.2008.01117.x
    91 https://doi.org/10.1111/j.1095-8312.2011.01734.x
    92 https://doi.org/10.1111/j.1365-2583.2005.00551.x
    93 https://doi.org/10.1111/j.1365-294x.2010.04941.x
    94 https://doi.org/10.1111/j.1525-142x.2005.05036.x
    95 https://doi.org/10.1111/j.1558-5646.2012.01653.x
    96 https://doi.org/10.1126/science.287.5461.2185
    97 https://doi.org/10.1139/g01-139
    98 https://doi.org/10.1139/g82-002
    99 https://doi.org/10.1146/annurev.ecolsys.38.091206.095728
    100 https://doi.org/10.1146/annurev.ento.43.1.619
    101 https://doi.org/10.1159/000248649
    102 https://doi.org/10.1242/jeb.014043
    103 https://doi.org/10.1523/jneurosci.0995-05.2005
    104 https://doi.org/10.1641/0006-3568(2001)051[0521:poesoc]2.0.co;2
    105 https://doi.org/10.2108/zsj.22.723
    106 schema:datePublished 2013-12
    107 schema:datePublishedReg 2013-12-01
    108 schema:description BACKGROUND: A number of spider species within the family Theridiidae exhibit a dramatic abdominal (opisthosomal) color polymorphism. The polymorphism is inherited in a broadly Mendelian fashion and in some species consists of dozens of discrete morphs that are convergent across taxa and populations. Few genomic resources exist for spiders. Here, as a first necessary step towards identifying the genetic basis for this trait we present the near complete transcriptomes of two species: the Hawaiian happy-face spider Theridion grallator and Theridion californicum. We mined the gene complement for pigment-pathway genes and examined differential expression (DE) between morphs that are unpatterned (plain yellow) and patterned (yellow with superimposed patches of red, white or very dark brown). RESULTS: By deep sequencing both RNA-seq and normalized cDNA libraries from pooled specimens of each species we were able to assemble a comprehensive gene set for both species that we estimate to be 98-99% complete. It is likely that these species express more than 20,000 protein-coding genes, perhaps 4.5% (ca. 870) of which might be unique to spiders. Mining for pigment-associated Drosophila melanogaster genes indicated the presence of all ommochrome pathway genes and most pteridine pathway genes and DE analyses further indicate a possible role for the pteridine pathway in theridiid color patterning. CONCLUSIONS: Based upon our estimates, T. grallator and T. californicum express a large inventory of protein-coding genes. Our comprehensive assembly illustrates the continuing value of sequencing normalized cDNA libraries in addition to RNA-seq in order to generate a reference transcriptome for non-model species. The identification of pteridine-related genes and their possible involvement in color patterning is a novel finding in spiders and one that suggests a biochemical link between guanine deposits and the pigments exhibited by these species.
    109 schema:genre research_article
    110 schema:inLanguage en
    111 schema:isAccessibleForFree true
    112 schema:isPartOf N676ba96db3b84ef6b5b9a2ca18fbd0ac
    113 N7301c84ababa48eabebb1ab69cc9ae4f
    114 sg:journal.1023790
    115 schema:name De novo characterization of the gene-rich transcriptomes of two color-polymorphic spiders, Theridion grallator and T. californicum (Araneae: Theridiidae), with special reference to pigment genes
    116 schema:pagination 862
    117 schema:productId N4e5b790277ab4fe1bbeafb5db2808914
    118 N6340aab181934ad3b6efc38a5fdf37f2
    119 N89507dcd80b84b0e8f48b1db664f0d92
    120 Nd1d6143c13df454da3826182743f5c89
    121 Nd61a0f561cd94a9ebe002d661ff4dda4
    122 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014964177
    123 https://doi.org/10.1186/1471-2164-14-862
    124 schema:sdDatePublished 2019-04-10T14:16
    125 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    126 schema:sdPublisher Nc652129382ee4365969f1fcc3dc5c517
    127 schema:url http://link.springer.com/10.1186%2F1471-2164-14-862
    128 sgo:license sg:explorer/license/
    129 sgo:sdDataset articles
    130 rdf:type schema:ScholarlyArticle
    131 N028adde381694920adf8a800e6980079 rdf:first sg:person.01046162473.37
    132 rdf:rest N550bd70b05b4466e857c18e60e6d95c6
    133 N1804c962a27e40e58c0b7f6c8d50c278 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    134 schema:name Phylogeny
    135 rdf:type schema:DefinedTerm
    136 N2385be40b2e840b087032a51849b8c57 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    137 schema:name Pigments, Biological
    138 rdf:type schema:DefinedTerm
    139 N2aaae7ebdb9e49089d5af9cf8b2332af schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    140 schema:name Animals
    141 rdf:type schema:DefinedTerm
    142 N2b68bf6795d24d4c90c26ae70da2134f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    143 schema:name Gene Library
    144 rdf:type schema:DefinedTerm
    145 N2cdc111bc3f7480c9d93fef0055c9c51 rdf:first sg:person.0656430717.54
    146 rdf:rest Nfd49d267bc2042e3b63a6a0fca8b42e2
    147 N3cf0dce51a854f2fbdbe7716394a8026 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    148 schema:name Biosynthetic Pathways
    149 rdf:type schema:DefinedTerm
    150 N40fd9a5557b7458e82e6210d388f93c2 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    151 schema:name Pteridines
    152 rdf:type schema:DefinedTerm
    153 N4e5b790277ab4fe1bbeafb5db2808914 schema:name doi
    154 schema:value 10.1186/1471-2164-14-862
    155 rdf:type schema:PropertyValue
    156 N550bd70b05b4466e857c18e60e6d95c6 rdf:first sg:person.0630234030.66
    157 rdf:rest rdf:nil
    158 N58dbcfce6f4f4ba5b0e771862d0e4d69 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    159 schema:name Evolution, Molecular
    160 rdf:type schema:DefinedTerm
    161 N6340aab181934ad3b6efc38a5fdf37f2 schema:name readcube_id
    162 schema:value 474b72fc42976a42c82385746c3f99186e39f9e13a75c79ac0728243762e1e47
    163 rdf:type schema:PropertyValue
    164 N676ba96db3b84ef6b5b9a2ca18fbd0ac schema:issueNumber 1
    165 rdf:type schema:PublicationIssue
    166 N7301c84ababa48eabebb1ab69cc9ae4f schema:volumeNumber 14
    167 rdf:type schema:PublicationVolume
    168 N7bc58a849d194a4f9ea71923c622bf73 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    169 schema:name Transcriptome
    170 rdf:type schema:DefinedTerm
    171 N85e127fe6d054524937d2357d6a79462 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    172 schema:name Pigmentation
    173 rdf:type schema:DefinedTerm
    174 N8688747cacab4504896ff098af70ee7b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    175 schema:name Phenothiazines
    176 rdf:type schema:DefinedTerm
    177 N89507dcd80b84b0e8f48b1db664f0d92 schema:name pubmed_id
    178 schema:value 24314324
    179 rdf:type schema:PropertyValue
    180 Nb07fb1f46d1d46d997b6950458752c60 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    181 schema:name Spiders
    182 rdf:type schema:DefinedTerm
    183 Nb4fe0cd7eca24c4d9ba602a4be266dbb rdf:first sg:person.015160067334.49
    184 rdf:rest N2cdc111bc3f7480c9d93fef0055c9c51
    185 Nc652129382ee4365969f1fcc3dc5c517 schema:name Springer Nature - SN SciGraph project
    186 rdf:type schema:Organization
    187 Nd1d6143c13df454da3826182743f5c89 schema:name nlm_unique_id
    188 schema:value 100965258
    189 rdf:type schema:PropertyValue
    190 Nd49bd8ebf8794bb68c8bb3852a776b5d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    191 schema:name Cluster Analysis
    192 rdf:type schema:DefinedTerm
    193 Nd61a0f561cd94a9ebe002d661ff4dda4 schema:name dimensions_id
    194 schema:value pub.1014964177
    195 rdf:type schema:PropertyValue
    196 Nef19ee2439694fc0b7587e8d3ee58eea schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    197 schema:name Multigene Family
    198 rdf:type schema:DefinedTerm
    199 Nfd49d267bc2042e3b63a6a0fca8b42e2 rdf:first sg:person.0711731405.34
    200 rdf:rest N028adde381694920adf8a800e6980079
    201 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    202 schema:name Biological Sciences
    203 rdf:type schema:DefinedTerm
    204 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    205 schema:name Genetics
    206 rdf:type schema:DefinedTerm
    207 sg:grant.3103074 http://pending.schema.org/fundedItem sg:pub.10.1186/1471-2164-14-862
    208 rdf:type schema:MonetaryGrant
    209 sg:journal.1023790 schema:issn 1471-2164
    210 schema:name BMC Genomics
    211 rdf:type schema:Periodical
    212 sg:person.01046162473.37 schema:affiliation https://www.grid.ac/institutes/grid.5685.e
    213 schema:familyName Oxford
    214 schema:givenName Geoff S
    215 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046162473.37
    216 rdf:type schema:Person
    217 sg:person.015160067334.49 schema:affiliation https://www.grid.ac/institutes/grid.47840.3f
    218 schema:familyName Croucher
    219 schema:givenName Peter JP
    220 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015160067334.49
    221 rdf:type schema:Person
    222 sg:person.0630234030.66 schema:affiliation https://www.grid.ac/institutes/grid.47840.3f
    223 schema:familyName Gillespie
    224 schema:givenName Rosemary G
    225 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0630234030.66
    226 rdf:type schema:Person
    227 sg:person.0656430717.54 schema:affiliation https://www.grid.ac/institutes/grid.47840.3f
    228 schema:familyName Brewer
    229 schema:givenName Michael S
    230 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0656430717.54
    231 rdf:type schema:Person
    232 sg:person.0711731405.34 schema:affiliation https://www.grid.ac/institutes/grid.47840.3f
    233 schema:familyName Winchell
    234 schema:givenName Christopher J
    235 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0711731405.34
    236 rdf:type schema:Person
    237 sg:pub.10.1007/978-3-642-71552-5_2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003699883
    238 https://doi.org/10.1007/978-3-642-71552-5_2
    239 rdf:type schema:CreativeWork
    240 sg:pub.10.1007/978-3-642-71552-5_22 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049225344
    241 https://doi.org/10.1007/978-3-642-71552-5_22
    242 rdf:type schema:CreativeWork
    243 sg:pub.10.1007/bf00484496 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030556501
    244 https://doi.org/10.1007/bf00484496
    245 rdf:type schema:CreativeWork
    246 sg:pub.10.1007/bf00706130 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008381177
    247 https://doi.org/10.1007/bf00706130
    248 rdf:type schema:CreativeWork
    249 sg:pub.10.1007/bf02110029 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037855877
    250 https://doi.org/10.1007/bf02110029
    251 rdf:type schema:CreativeWork
    252 sg:pub.10.1007/s00438-002-0792-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1075238739
    253 https://doi.org/10.1007/s00438-002-0792-0
    254 rdf:type schema:CreativeWork
    255 sg:pub.10.1023/a:1004115718597 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024656745
    256 https://doi.org/10.1023/a:1004115718597
    257 rdf:type schema:CreativeWork
    258 sg:pub.10.1038/3947 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022727323
    259 https://doi.org/10.1038/3947
    260 rdf:type schema:CreativeWork
    261 sg:pub.10.1038/hdy.1983.74 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000926854
    262 https://doi.org/10.1038/hdy.1983.74
    263 rdf:type schema:CreativeWork
    264 sg:pub.10.1038/hdy.1996.37 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012511590
    265 https://doi.org/10.1038/hdy.1996.37
    266 rdf:type schema:CreativeWork
    267 sg:pub.10.1038/hdy.1996.38 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008239024
    268 https://doi.org/10.1038/hdy.1996.38
    269 rdf:type schema:CreativeWork
    270 sg:pub.10.1038/hdy.1996.39 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006822479
    271 https://doi.org/10.1038/hdy.1996.39
    272 rdf:type schema:CreativeWork
    273 sg:pub.10.1038/nature10640 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004016407
    274 https://doi.org/10.1038/nature10640
    275 rdf:type schema:CreativeWork
    276 sg:pub.10.1038/nbt.1883 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015803168
    277 https://doi.org/10.1038/nbt.1883
    278 rdf:type schema:CreativeWork
    279 sg:pub.10.1038/nrg2484 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030687647
    280 https://doi.org/10.1038/nrg2484
    281 rdf:type schema:CreativeWork
    282 sg:pub.10.1038/nrm2258 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005579140
    283 https://doi.org/10.1038/nrm2258
    284 rdf:type schema:CreativeWork
    285 sg:pub.10.1186/1471-2105-12-323 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021902674
    286 https://doi.org/10.1186/1471-2105-12-323
    287 rdf:type schema:CreativeWork
    288 sg:pub.10.1186/1471-2148-9-157 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045090576
    289 https://doi.org/10.1186/1471-2148-9-157
    290 rdf:type schema:CreativeWork
    291 sg:pub.10.1186/1471-2164-7-277 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036232051
    292 https://doi.org/10.1186/1471-2164-7-277
    293 rdf:type schema:CreativeWork
    294 sg:pub.10.1186/1741-7007-2-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012314942
    295 https://doi.org/10.1186/1741-7007-2-1
    296 rdf:type schema:CreativeWork
    297 sg:pub.10.1186/1742-9994-7-10 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009148564
    298 https://doi.org/10.1186/1742-9994-7-10
    299 rdf:type schema:CreativeWork
    300 sg:pub.10.1186/gb-2000-1-1-reports031 schema:sameAs https://app.dimensions.ai/details/publication/pub.1085155451
    301 https://doi.org/10.1186/gb-2000-1-1-reports031
    302 rdf:type schema:CreativeWork
    303 sg:pub.10.1186/gb-2005-6-2-r11 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053488500
    304 https://doi.org/10.1186/gb-2005-6-2-r11
    305 rdf:type schema:CreativeWork
    306 sg:pub.10.1186/gb-2009-10-3-r25 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049583368
    307 https://doi.org/10.1186/gb-2009-10-3-r25
    308 rdf:type schema:CreativeWork
    309 sg:pub.10.1186/gb-2010-11-3-r25 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050509557
    310 https://doi.org/10.1186/gb-2010-11-3-r25
    311 rdf:type schema:CreativeWork
    312 https://doi.org/10.1002/arch.940150406 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010829796
    313 rdf:type schema:CreativeWork
    314 https://doi.org/10.1016/0300-9629(72)90448-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012257499
    315 rdf:type schema:CreativeWork
    316 https://doi.org/10.1016/j.bbrc.2005.08.020 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020095984
    317 rdf:type schema:CreativeWork
    318 https://doi.org/10.1016/j.dci.2007.03.012 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030091884
    319 rdf:type schema:CreativeWork
    320 https://doi.org/10.1016/j.jip.2003.08.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028201139
    321 rdf:type schema:CreativeWork
    322 https://doi.org/10.1016/j.tice.2009.05.002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027860990
    323 rdf:type schema:CreativeWork
    324 https://doi.org/10.1016/j.tree.2006.10.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029751771
    325 rdf:type schema:CreativeWork
    326 https://doi.org/10.1016/j.ympev.2010.04.024 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043956431
    327 rdf:type schema:CreativeWork
    328 https://doi.org/10.1016/s0005-2736(99)00064-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044803018
    329 rdf:type schema:CreativeWork
    330 https://doi.org/10.1016/s0065-2806(08)60130-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028559127
    331 rdf:type schema:CreativeWork
    332 https://doi.org/10.1016/s0076-6879(96)66026-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009287635
    333 rdf:type schema:CreativeWork
    334 https://doi.org/10.1016/s0965-1748(99)00002-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015650936
    335 rdf:type schema:CreativeWork
    336 https://doi.org/10.1016/s1534-5807(02)00267-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040243989
    337 rdf:type schema:CreativeWork
    338 https://doi.org/10.1017/s0016672300029402 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053753071
    339 rdf:type schema:CreativeWork
    340 https://doi.org/10.1042/0264-6021:3470001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1056714628
    341 rdf:type schema:CreativeWork
    342 https://doi.org/10.1042/bj20060424 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007050331
    343 rdf:type schema:CreativeWork
    344 https://doi.org/10.1042/bj3470001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038020096
    345 rdf:type schema:CreativeWork
    346 https://doi.org/10.1046/j.1365-294x.1998.00309.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1023919645
    347 rdf:type schema:CreativeWork
    348 https://doi.org/10.1073/pnas.0401926101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045014107
    349 rdf:type schema:CreativeWork
    350 https://doi.org/10.1074/jbc.m009462200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024871051
    351 rdf:type schema:CreativeWork
    352 https://doi.org/10.1074/jbc.m412236200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009735589
    353 rdf:type schema:CreativeWork
    354 https://doi.org/10.1074/jbc.m910307199 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049105611
    355 rdf:type schema:CreativeWork
    356 https://doi.org/10.1080/10635150701472164 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019116948
    357 rdf:type schema:CreativeWork
    358 https://doi.org/10.1083/jcb.200610081 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001739367
    359 rdf:type schema:CreativeWork
    360 https://doi.org/10.1083/jcb.201102021 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011932522
    361 rdf:type schema:CreativeWork
    362 https://doi.org/10.1091/mbc.e06-05-0379 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037227551
    363 rdf:type schema:CreativeWork
    364 https://doi.org/10.1093/beheco/arh062 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048893500
    365 rdf:type schema:CreativeWork
    366 https://doi.org/10.1093/bioinformatics/btg412 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051607942
    367 rdf:type schema:CreativeWork
    368 https://doi.org/10.1093/bioinformatics/bti610 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006001436
    369 rdf:type schema:CreativeWork
    370 https://doi.org/10.1093/bioinformatics/btl446 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046470836
    371 rdf:type schema:CreativeWork
    372 https://doi.org/10.1093/bioinformatics/btm453 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036891129
    373 rdf:type schema:CreativeWork
    374 https://doi.org/10.1093/bioinformatics/btn615 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015664076
    375 rdf:type schema:CreativeWork
    376 https://doi.org/10.1093/bioinformatics/btp450 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039284641
    377 rdf:type schema:CreativeWork
    378 https://doi.org/10.1093/bioinformatics/btp616 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023247882
    379 rdf:type schema:CreativeWork
    380 https://doi.org/10.1093/bioinformatics/btq217 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018999537
    381 rdf:type schema:CreativeWork
    382 https://doi.org/10.1093/molbev/msn067 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009887615
    383 rdf:type schema:CreativeWork
    384 https://doi.org/10.1093/molbev/msq192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037063166
    385 rdf:type schema:CreativeWork
    386 https://doi.org/10.1093/nar/28.1.27 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017305614
    387 rdf:type schema:CreativeWork
    388 https://doi.org/10.1093/nar/30.7.1575 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001067672
    389 rdf:type schema:CreativeWork
    390 https://doi.org/10.1093/nar/gkn176 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022937830
    391 rdf:type schema:CreativeWork
    392 https://doi.org/10.1093/nar/gkq1058 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044687013
    393 rdf:type schema:CreativeWork
    394 https://doi.org/10.1093/oxfordjournals.molbev.a026334 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037148423
    395 rdf:type schema:CreativeWork
    396 https://doi.org/10.1098/rsbl.2011.0704 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051614367
    397 rdf:type schema:CreativeWork
    398 https://doi.org/10.1098/rstb.2008.0212 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027071690
    399 rdf:type schema:CreativeWork
    400 https://doi.org/10.1101/gr.10.4.511 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039597681
    401 rdf:type schema:CreativeWork
    402 https://doi.org/10.1101/gr.200801 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052043933
    403 rdf:type schema:CreativeWork
    404 https://doi.org/10.1101/gr.5969107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034259503
    405 rdf:type schema:CreativeWork
    406 https://doi.org/10.1111/j.0105-2896.2004.00116.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1026197535
    407 rdf:type schema:CreativeWork
    408 https://doi.org/10.1111/j.1095-8312.2008.01117.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1039974295
    409 rdf:type schema:CreativeWork
    410 https://doi.org/10.1111/j.1095-8312.2011.01734.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1009721121
    411 rdf:type schema:CreativeWork
    412 https://doi.org/10.1111/j.1365-2583.2005.00551.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1009231840
    413 rdf:type schema:CreativeWork
    414 https://doi.org/10.1111/j.1365-294x.2010.04941.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1046931407
    415 rdf:type schema:CreativeWork
    416 https://doi.org/10.1111/j.1525-142x.2005.05036.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1031964808
    417 rdf:type schema:CreativeWork
    418 https://doi.org/10.1111/j.1558-5646.2012.01653.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1035071295
    419 rdf:type schema:CreativeWork
    420 https://doi.org/10.1126/science.287.5461.2185 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019737566
    421 rdf:type schema:CreativeWork
    422 https://doi.org/10.1139/g01-139 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023704765
    423 rdf:type schema:CreativeWork
    424 https://doi.org/10.1139/g82-002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052307299
    425 rdf:type schema:CreativeWork
    426 https://doi.org/10.1146/annurev.ecolsys.38.091206.095728 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046707801
    427 rdf:type schema:CreativeWork
    428 https://doi.org/10.1146/annurev.ento.43.1.619 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024556933
    429 rdf:type schema:CreativeWork
    430 https://doi.org/10.1159/000248649 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024619322
    431 rdf:type schema:CreativeWork
    432 https://doi.org/10.1242/jeb.014043 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027245030
    433 rdf:type schema:CreativeWork
    434 https://doi.org/10.1523/jneurosci.0995-05.2005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021405591
    435 rdf:type schema:CreativeWork
    436 https://doi.org/10.1641/0006-3568(2001)051[0521:poesoc]2.0.co;2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006207729
    437 rdf:type schema:CreativeWork
    438 https://doi.org/10.2108/zsj.22.723 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016431859
    439 rdf:type schema:CreativeWork
    440 https://www.grid.ac/institutes/grid.47840.3f schema:alternateName University of California, Berkeley
    441 schema:name Department of Environmental Science, Policy and Management, University of California, 94720-3114, Berkeley, CA, USA
    442 Department of Molecular and Cell Biology, University of California, 94720-3200, Berkeley, CA, USA
    443 rdf:type schema:Organization
    444 https://www.grid.ac/institutes/grid.5685.e schema:alternateName University of York
    445 schema:name Department of Biology (E019), University of York, Wentworth Way, YO10 5DD, Heslington, York, UK
    446 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...