Genomic analysis of the native European Solanum species, S. dulcamara View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2013-12

AUTHORS

Nunzio D’Agostino, Tomek Golas, Henri van de Geest, Aureliano Bombarely, Thikra Dawood, Jan Zethof, Nicky Driedonks, Erik Wijnker, Joachim Bargsten, Jan-Peter Nap, Celestina Mariani, Ivo Rieu

ABSTRACT

BACKGROUND: Solanum dulcamara (bittersweet, climbing nightshade) is one of the few species of the Solanaceae family native to Europe. As a common weed it is adapted to a wide range of ecological niches and it has long been recognized as one of the alternative hosts for pathogens and pests responsible for many important diseases in potato, such as Phytophthora. At the same time, it may represent an alternative source of resistance genes against these diseases. Despite its unique ecology and potential as a genetic resource, genomic research tools are lacking for S. dulcamara. We have taken advantage of next-generation sequencing to speed up research on and use of this non-model species. RESULTS: In this work, we present the first large-scale characterization of the S. dulcamara transcriptome. Through comparison of RNAseq reads from two different accessions, we were able to predict transcript-based SNP and SSR markers. Using the SNP markers in combination with genomic AFLP and CAPS markers, the first genome-wide genetic linkage map of bittersweet was generated. Based on gene orthology, the markers were anchored to the genome of related Solanum species (tomato, potato and eggplant), revealing both conserved and novel chromosomal rearrangements. This allowed a better estimation of the evolutionary moment of rearrangements in a number of cases and showed that chromosomal breakpoints are regularly re-used. CONCLUSION: Knowledge and tools developed as part of this study pave the way for future genomic research and exploitation of this wild Solanum species. The transcriptome assembly represents a resource for functional analysis of genes underlying interesting biological and agronomical traits and, in the absence of the full genome, provides a reference for RNAseq gene expression profiling aimed at understanding the unique biology of S. dulcamara. Cross-species orthology-based marker selection is shown to be a powerful tool to quickly generate a comparative genetic map, which may speed up gene mapping and contribute to the understanding of genome evolution within the Solanaceae family. More... »

PAGES

356

References to SciGraph publications

  • 1999-08-26. Primer3 on the WWW for General Users and for Biologist Programmers in BIOINFORMATICS METHODS AND PROTOCOLS
  • 2006-03. Susceptibility of five nightshade (Solanum) species tophytophthora infestans in AMERICAN JOURNAL OF POTATO RESEARCH
  • 2012-12. High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing in BMC GENOMICS
  • 2013-01. Comparative next-generation mapping of the Phytophthora infestans resistance gene Rpi-dlc2 in a European accession of Solanum dulcamara in THEORETICAL AND APPLIED GENETICS
  • 2011-07. Full-length transcriptome assembly from RNA-Seq data without a reference genome in NATURE BIOTECHNOLOGY
  • 2008-12. Large-scale identification of polymorphic microsatellites using an in silico approach in BMC BIOINFORMATICS
  • 2012-05. The tomato genome sequence provides insights into fleshy fruit evolution in NATURE
  • 2010-12. Chromosomal evolution in the plant family Solanaceae in BMC GENOMICS
  • 2010-02. Identification of a resistance gene Rpi-dlc1 to Phytophthora infestans in European accessions of Solanum dulcamara in THEORETICAL AND APPLIED GENETICS
  • 2010-03. Genetic structure of European accessions of Solanum dulcamara L. (Solanaceae) in PLANT SYSTEMATICS AND EVOLUTION
  • 2006-12. QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species in BMC BIOINFORMATICS
  • 1956-07. Solanum dulcamara L. (Bitterzoet) als mogelijke bron voor bladrolvirus in NONE
  • 2011-07-10. Genome sequence and analysis of the tuber crop potato in NATURE
  • 2007-12. High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology in BMC GENOMICS
  • 2011-12. DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI in BMC BIOINFORMATICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2164-14-356

    DOI

    http://dx.doi.org/10.1186/1471-2164-14-356

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1047517620

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/23713999


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Chromosomes, Plant", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Cluster Analysis", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Evolution, Molecular", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Gene Expression Profiling", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genetic Markers", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genomics", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Microsatellite Repeats", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Models, Genetic", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Molecular Sequence Annotation", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Polymorphism, Single Nucleotide", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Solanum", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Species Specificity", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Centro di Ricerca per l\u2019Orticoltura", 
              "id": "https://www.grid.ac/institutes/grid.435870.d", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands", 
                "Consiglio per la ricerca e la sperimentazione in agricoltura, Centro di ricerca per l\u2019orticoltura, via Cavalleggeri 25, 84098, Pontecagnano, SA, Italy"
              ], 
              "type": "Organization"
            }, 
            "familyName": "D\u2019Agostino", 
            "givenName": "Nunzio", 
            "id": "sg:person.0601210733.22", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0601210733.22"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands", 
                "Centre for BioSystems Genomics 2012 (CBSG2012), PO Box 98, 6700, Wageningen, AB, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Golas", 
            "givenName": "Tomek", 
            "id": "sg:person.0664670334.32", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0664670334.32"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "Applied Bioinformatics, Bioscience, Plant Research International, Wageningen University & Research Centre, PO Box 619, 6700, Wageningen, AP, The Netherlands", 
                "Centre for BioSystems Genomics 2012 (CBSG2012), PO Box 98, 6700, Wageningen, AB, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "van de Geest", 
            "givenName": "Henri", 
            "id": "sg:person.01314512517.16", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01314512517.16"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Cornell University", 
              "id": "https://www.grid.ac/institutes/grid.5386.8", 
              "name": [
                "Boyce Thompson Institute for Plant Research, Tower Road, 14853-1801, Ithaca, New York, USA"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bombarely", 
            "givenName": "Aureliano", 
            "id": "sg:person.01201103005.57", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201103005.57"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Radboud University Nijmegen", 
              "id": "https://www.grid.ac/institutes/grid.5590.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Dawood", 
            "givenName": "Thikra", 
            "id": "sg:person.010672401461.07", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010672401461.07"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Radboud University Nijmegen", 
              "id": "https://www.grid.ac/institutes/grid.5590.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Zethof", 
            "givenName": "Jan", 
            "id": "sg:person.01060007535.51", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060007535.51"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Radboud University Nijmegen", 
              "id": "https://www.grid.ac/institutes/grid.5590.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Driedonks", 
            "givenName": "Nicky", 
            "id": "sg:person.0670531434.13", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0670531434.13"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wijnker", 
            "givenName": "Erik", 
            "id": "sg:person.01124432620.04", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124432620.04"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Wageningen University & Research", 
              "id": "https://www.grid.ac/institutes/grid.4818.5", 
              "name": [
                "Applied Bioinformatics, Bioscience, Plant Research International, Wageningen University & Research Centre, PO Box 619, 6700, Wageningen, AP, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Bargsten", 
            "givenName": "Joachim", 
            "id": "sg:person.01035720473.27", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01035720473.27"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "Applied Bioinformatics, Bioscience, Plant Research International, Wageningen University & Research Centre, PO Box 619, 6700, Wageningen, AP, The Netherlands", 
                "Centre for BioSystems Genomics 2012 (CBSG2012), PO Box 98, 6700, Wageningen, AB, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Nap", 
            "givenName": "Jan-Peter", 
            "id": "sg:person.0704422453.39", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0704422453.39"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Centre for BioSystems Genomics", 
              "id": "https://www.grid.ac/institutes/grid.450019.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands", 
                "Centre for BioSystems Genomics 2012 (CBSG2012), PO Box 98, 6700, Wageningen, AB, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mariani", 
            "givenName": "Celestina", 
            "id": "sg:person.0734307551.16", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0734307551.16"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Radboud University Nijmegen", 
              "id": "https://www.grid.ac/institutes/grid.5590.9", 
              "name": [
                "IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Rieu", 
            "givenName": "Ivo", 
            "id": "sg:person.01333242600.11", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01333242600.11"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1111/j.1365-2338.1998.tb00713.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000025271"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.1224503", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000505228"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-12-85", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1001043555", 
              "https://doi.org/10.1186/1471-2105-12-85"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature10158", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002525491", 
              "https://doi.org/10.1038/nature10158"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/aob/mcq258", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008477906"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-012-1959-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010487681", 
              "https://doi.org/10.1007/s00122-012-1959-7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-7-438", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014338447", 
              "https://doi.org/10.1186/1471-2105-7-438"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-7-438", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014338447", 
              "https://doi.org/10.1186/1471-2105-7-438"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nbt.1883", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015803168", 
              "https://doi.org/10.1038/nbt.1883"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-13-281", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017027392", 
              "https://doi.org/10.1186/1471-2164-13-281"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-313x.2012.05012.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018487232"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-8-424", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020897820", 
              "https://doi.org/10.1186/1471-2164-8-424"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-294x.1992.tb00182.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022140665"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkn176", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022937830"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-2338.1996.tb01512.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023267516"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0504070102", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023582132"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0504070102", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023582132"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1385/1-59259-192-2:365", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023668922", 
              "https://doi.org/10.1385/1-59259-192-2:365"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00606-009-0260-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024230839", 
              "https://doi.org/10.1007/s00606-009-0260-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00606-009-0260-y", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024230839", 
              "https://doi.org/10.1007/s00606-009-0260-y"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-11-182", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024439002", 
              "https://doi.org/10.1186/1471-2164-11-182"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkr981", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027264776"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf01987672", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028740765", 
              "https://doi.org/10.1007/bf01987672"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a026239", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1028936338"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02872156", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029305632", 
              "https://doi.org/10.1007/bf02872156"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02872156", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029305632", 
              "https://doi.org/10.1007/bf02872156"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf02872156", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029305632", 
              "https://doi.org/10.1007/bf02872156"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-2338.1996.tb01511.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029853794"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-009-1202-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034059856", 
              "https://doi.org/10.1007/s00122-009-1202-3"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00122-009-1202-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1034059856", 
              "https://doi.org/10.1007/s00122-009-1202-3"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1104/pp.105.060707", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1036331692"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkq1079", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1038685652"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature11119", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047486795", 
              "https://doi.org/10.1038/nature11119"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1469-8137.2012.04195.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048222844"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1744-7348.2011.00482.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1049661325"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-9-374", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050869461", 
              "https://doi.org/10.1186/1471-2105-9-374"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-9-374", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050869461", 
              "https://doi.org/10.1186/1471-2105-9-374"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkm321", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1052015517"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1094/pdis-10-10-0768", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060091801"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1094/pdis-10-10-0768", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1060091801"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1600/036364407781179671", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1068114623"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1074544770", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1074631098", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1074841440", 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2013-12", 
        "datePublishedReg": "2013-12-01", 
        "description": "BACKGROUND: Solanum dulcamara (bittersweet, climbing nightshade) is one of the few species of the Solanaceae family native to Europe. As a common weed it is adapted to a wide range of ecological niches and it has long been recognized as one of the alternative hosts for pathogens and pests responsible for many important diseases in potato, such as Phytophthora. At the same time, it may represent an alternative source of resistance genes against these diseases. Despite its unique ecology and potential as a genetic resource, genomic research tools are lacking for S. dulcamara. We have taken advantage of next-generation sequencing to speed up research on and use of this non-model species.\nRESULTS: In this work, we present the first large-scale characterization of the S. dulcamara transcriptome. Through comparison of RNAseq reads from two different accessions, we were able to predict transcript-based SNP and SSR markers. Using the SNP markers in combination with genomic AFLP and CAPS markers, the first genome-wide genetic linkage map of bittersweet was generated. Based on gene orthology, the markers were anchored to the genome of related Solanum species (tomato, potato and eggplant), revealing both conserved and novel chromosomal rearrangements. This allowed a better estimation of the evolutionary moment of rearrangements in a number of cases and showed that chromosomal breakpoints are regularly re-used.\nCONCLUSION: Knowledge and tools developed as part of this study pave the way for future genomic research and exploitation of this wild Solanum species. The transcriptome assembly represents a resource for functional analysis of genes underlying interesting biological and agronomical traits and, in the absence of the full genome, provides a reference for RNAseq gene expression profiling aimed at understanding the unique biology of S. dulcamara. Cross-species orthology-based marker selection is shown to be a powerful tool to quickly generate a comparative genetic map, which may speed up gene mapping and contribute to the understanding of genome evolution within the Solanaceae family.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/1471-2164-14-356", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.4112631", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1023790", 
            "issn": [
              "1471-2164"
            ], 
            "name": "BMC Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "14"
          }
        ], 
        "name": "Genomic analysis of the native European Solanum species, S. dulcamara", 
        "pagination": "356", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "e25bb41216b99857066b71ac309aaa73e377d145d3a19245d13db52f76b5fa32"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "23713999"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "100965258"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/1471-2164-14-356"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1047517620"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/1471-2164-14-356", 
          "https://app.dimensions.ai/details/publication/pub.1047517620"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T14:08", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000507.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2F1471-2164-14-356"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-356'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-356'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-356'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-14-356'


     

    This table displays all metadata directly associated to this object as RDF triples.

    331 TRIPLES      21 PREDICATES      77 URIs      33 LITERALS      21 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/1471-2164-14-356 schema:about N4082600e5fa3448da6307efb9a5c3db7
    2 N45de567290a74008abcebc95485a1f7a
    3 N46625bf2e5464197bc58a210ca3a3a25
    4 N531ad8f8df374e87a78198b4d7933032
    5 N7ccc1b2350844929bd1b9cb13058369a
    6 N8de641452bff463fabaf0fb32143d088
    7 N9c58ec8ee70f484fa9fff6c00bf13109
    8 N9d76ab381e7044329e227670ba1987b5
    9 Nc4597d7298df474cb82df836f531c381
    10 Ne2a82cf985c14bb891cb69162ffac243
    11 Nf420723624424503a5e425a3bed64046
    12 Nf901c85faec64f8798ef3841adc1c951
    13 anzsrc-for:06
    14 anzsrc-for:0604
    15 schema:author N41a074c9faaa4f3abdaec13d8ea29749
    16 schema:citation sg:pub.10.1007/bf01987672
    17 sg:pub.10.1007/bf02872156
    18 sg:pub.10.1007/s00122-009-1202-3
    19 sg:pub.10.1007/s00122-012-1959-7
    20 sg:pub.10.1007/s00606-009-0260-y
    21 sg:pub.10.1038/nature10158
    22 sg:pub.10.1038/nature11119
    23 sg:pub.10.1038/nbt.1883
    24 sg:pub.10.1186/1471-2105-12-85
    25 sg:pub.10.1186/1471-2105-7-438
    26 sg:pub.10.1186/1471-2105-9-374
    27 sg:pub.10.1186/1471-2164-11-182
    28 sg:pub.10.1186/1471-2164-13-281
    29 sg:pub.10.1186/1471-2164-8-424
    30 sg:pub.10.1385/1-59259-192-2:365
    31 https://app.dimensions.ai/details/publication/pub.1074544770
    32 https://app.dimensions.ai/details/publication/pub.1074631098
    33 https://app.dimensions.ai/details/publication/pub.1074841440
    34 https://doi.org/10.1073/pnas.0504070102
    35 https://doi.org/10.1093/aob/mcq258
    36 https://doi.org/10.1093/nar/gkm321
    37 https://doi.org/10.1093/nar/gkn176
    38 https://doi.org/10.1093/nar/gkq1079
    39 https://doi.org/10.1093/nar/gkr981
    40 https://doi.org/10.1093/oxfordjournals.molbev.a026239
    41 https://doi.org/10.1094/pdis-10-10-0768
    42 https://doi.org/10.1101/gr.1224503
    43 https://doi.org/10.1104/pp.105.060707
    44 https://doi.org/10.1111/j.1365-2338.1996.tb01511.x
    45 https://doi.org/10.1111/j.1365-2338.1996.tb01512.x
    46 https://doi.org/10.1111/j.1365-2338.1998.tb00713.x
    47 https://doi.org/10.1111/j.1365-294x.1992.tb00182.x
    48 https://doi.org/10.1111/j.1365-313x.2012.05012.x
    49 https://doi.org/10.1111/j.1469-8137.2012.04195.x
    50 https://doi.org/10.1111/j.1744-7348.2011.00482.x
    51 https://doi.org/10.1600/036364407781179671
    52 schema:datePublished 2013-12
    53 schema:datePublishedReg 2013-12-01
    54 schema:description BACKGROUND: Solanum dulcamara (bittersweet, climbing nightshade) is one of the few species of the Solanaceae family native to Europe. As a common weed it is adapted to a wide range of ecological niches and it has long been recognized as one of the alternative hosts for pathogens and pests responsible for many important diseases in potato, such as Phytophthora. At the same time, it may represent an alternative source of resistance genes against these diseases. Despite its unique ecology and potential as a genetic resource, genomic research tools are lacking for S. dulcamara. We have taken advantage of next-generation sequencing to speed up research on and use of this non-model species. RESULTS: In this work, we present the first large-scale characterization of the S. dulcamara transcriptome. Through comparison of RNAseq reads from two different accessions, we were able to predict transcript-based SNP and SSR markers. Using the SNP markers in combination with genomic AFLP and CAPS markers, the first genome-wide genetic linkage map of bittersweet was generated. Based on gene orthology, the markers were anchored to the genome of related Solanum species (tomato, potato and eggplant), revealing both conserved and novel chromosomal rearrangements. This allowed a better estimation of the evolutionary moment of rearrangements in a number of cases and showed that chromosomal breakpoints are regularly re-used. CONCLUSION: Knowledge and tools developed as part of this study pave the way for future genomic research and exploitation of this wild Solanum species. The transcriptome assembly represents a resource for functional analysis of genes underlying interesting biological and agronomical traits and, in the absence of the full genome, provides a reference for RNAseq gene expression profiling aimed at understanding the unique biology of S. dulcamara. Cross-species orthology-based marker selection is shown to be a powerful tool to quickly generate a comparative genetic map, which may speed up gene mapping and contribute to the understanding of genome evolution within the Solanaceae family.
    55 schema:genre research_article
    56 schema:inLanguage en
    57 schema:isAccessibleForFree true
    58 schema:isPartOf N339a7ddefd6b485d87b097f1122784a3
    59 N83fab14b09704a6197efd3a28e39e786
    60 sg:journal.1023790
    61 schema:name Genomic analysis of the native European Solanum species, S. dulcamara
    62 schema:pagination 356
    63 schema:productId N2f15cf4eefd74b93843405c49830e598
    64 N39583e0988d24717ada9621f2aa17f7e
    65 N67e464094a7d4632b5b1f639324d3906
    66 Nce9dd7f884dc4d5f824030e8599c5d7f
    67 Ne4151a79d195438fa73eb28a11bee3bc
    68 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047517620
    69 https://doi.org/10.1186/1471-2164-14-356
    70 schema:sdDatePublished 2019-04-10T14:08
    71 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    72 schema:sdPublisher Naf20d57857724dfa8d20968ecb77e5c1
    73 schema:url http://link.springer.com/10.1186%2F1471-2164-14-356
    74 sgo:license sg:explorer/license/
    75 sgo:sdDataset articles
    76 rdf:type schema:ScholarlyArticle
    77 N05475ff2f1d34bb1a40caba6fc455d92 rdf:first sg:person.0664670334.32
    78 rdf:rest N4323f8ebd9b84f9fa842c39a8cf6b49e
    79 N2f15cf4eefd74b93843405c49830e598 schema:name doi
    80 schema:value 10.1186/1471-2164-14-356
    81 rdf:type schema:PropertyValue
    82 N339a7ddefd6b485d87b097f1122784a3 schema:issueNumber 1
    83 rdf:type schema:PublicationIssue
    84 N392f4900f3d74a6daddc0db8a2fcf115 rdf:first sg:person.0734307551.16
    85 rdf:rest Ne40feb5175634cb6a78366c95399a6ab
    86 N39583e0988d24717ada9621f2aa17f7e schema:name pubmed_id
    87 schema:value 23713999
    88 rdf:type schema:PropertyValue
    89 N4082600e5fa3448da6307efb9a5c3db7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    90 schema:name Gene Expression Profiling
    91 rdf:type schema:DefinedTerm
    92 N41a074c9faaa4f3abdaec13d8ea29749 rdf:first sg:person.0601210733.22
    93 rdf:rest N05475ff2f1d34bb1a40caba6fc455d92
    94 N4323f8ebd9b84f9fa842c39a8cf6b49e rdf:first sg:person.01314512517.16
    95 rdf:rest Nec7d6c8fef58429589da5c87089dc6dd
    96 N45de567290a74008abcebc95485a1f7a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    97 schema:name Species Specificity
    98 rdf:type schema:DefinedTerm
    99 N46625bf2e5464197bc58a210ca3a3a25 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    100 schema:name Evolution, Molecular
    101 rdf:type schema:DefinedTerm
    102 N531ad8f8df374e87a78198b4d7933032 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    103 schema:name Solanum
    104 rdf:type schema:DefinedTerm
    105 N67e464094a7d4632b5b1f639324d3906 schema:name dimensions_id
    106 schema:value pub.1047517620
    107 rdf:type schema:PropertyValue
    108 N743ff69b241f4242aa1b764a1c347e20 rdf:first sg:person.0670531434.13
    109 rdf:rest Nb8c7debec1b3428c86df15a813570846
    110 N78fc7045794a4110b2ef8f02ccfcc78a rdf:first sg:person.01060007535.51
    111 rdf:rest N743ff69b241f4242aa1b764a1c347e20
    112 N7ccc1b2350844929bd1b9cb13058369a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    113 schema:name Models, Genetic
    114 rdf:type schema:DefinedTerm
    115 N83fab14b09704a6197efd3a28e39e786 schema:volumeNumber 14
    116 rdf:type schema:PublicationVolume
    117 N8b9c21ea48c34b19a158c35ba5dd291a rdf:first sg:person.010672401461.07
    118 rdf:rest N78fc7045794a4110b2ef8f02ccfcc78a
    119 N8de641452bff463fabaf0fb32143d088 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    120 schema:name Polymorphism, Single Nucleotide
    121 rdf:type schema:DefinedTerm
    122 N9c58ec8ee70f484fa9fff6c00bf13109 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    123 schema:name Molecular Sequence Annotation
    124 rdf:type schema:DefinedTerm
    125 N9d76ab381e7044329e227670ba1987b5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    126 schema:name Microsatellite Repeats
    127 rdf:type schema:DefinedTerm
    128 Naf20d57857724dfa8d20968ecb77e5c1 schema:name Springer Nature - SN SciGraph project
    129 rdf:type schema:Organization
    130 Nb8c7debec1b3428c86df15a813570846 rdf:first sg:person.01124432620.04
    131 rdf:rest Nc7aa4456fe7c4e89a08fe68c153f9c33
    132 Nc4597d7298df474cb82df836f531c381 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    133 schema:name Cluster Analysis
    134 rdf:type schema:DefinedTerm
    135 Nc7aa4456fe7c4e89a08fe68c153f9c33 rdf:first sg:person.01035720473.27
    136 rdf:rest Ne513a0102d2f422ea46a2b779b81b16b
    137 Nce9dd7f884dc4d5f824030e8599c5d7f schema:name readcube_id
    138 schema:value e25bb41216b99857066b71ac309aaa73e377d145d3a19245d13db52f76b5fa32
    139 rdf:type schema:PropertyValue
    140 Ne2a82cf985c14bb891cb69162ffac243 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    141 schema:name Genetic Markers
    142 rdf:type schema:DefinedTerm
    143 Ne40feb5175634cb6a78366c95399a6ab rdf:first sg:person.01333242600.11
    144 rdf:rest rdf:nil
    145 Ne4151a79d195438fa73eb28a11bee3bc schema:name nlm_unique_id
    146 schema:value 100965258
    147 rdf:type schema:PropertyValue
    148 Ne513a0102d2f422ea46a2b779b81b16b rdf:first sg:person.0704422453.39
    149 rdf:rest N392f4900f3d74a6daddc0db8a2fcf115
    150 Nec7d6c8fef58429589da5c87089dc6dd rdf:first sg:person.01201103005.57
    151 rdf:rest N8b9c21ea48c34b19a158c35ba5dd291a
    152 Nf420723624424503a5e425a3bed64046 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    153 schema:name Chromosomes, Plant
    154 rdf:type schema:DefinedTerm
    155 Nf901c85faec64f8798ef3841adc1c951 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    156 schema:name Genomics
    157 rdf:type schema:DefinedTerm
    158 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    159 schema:name Biological Sciences
    160 rdf:type schema:DefinedTerm
    161 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    162 schema:name Genetics
    163 rdf:type schema:DefinedTerm
    164 sg:grant.4112631 http://pending.schema.org/fundedItem sg:pub.10.1186/1471-2164-14-356
    165 rdf:type schema:MonetaryGrant
    166 sg:journal.1023790 schema:issn 1471-2164
    167 schema:name BMC Genomics
    168 rdf:type schema:Periodical
    169 sg:person.01035720473.27 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    170 schema:familyName Bargsten
    171 schema:givenName Joachim
    172 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01035720473.27
    173 rdf:type schema:Person
    174 sg:person.01060007535.51 schema:affiliation https://www.grid.ac/institutes/grid.5590.9
    175 schema:familyName Zethof
    176 schema:givenName Jan
    177 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01060007535.51
    178 rdf:type schema:Person
    179 sg:person.010672401461.07 schema:affiliation https://www.grid.ac/institutes/grid.5590.9
    180 schema:familyName Dawood
    181 schema:givenName Thikra
    182 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010672401461.07
    183 rdf:type schema:Person
    184 sg:person.01124432620.04 schema:affiliation https://www.grid.ac/institutes/grid.4818.5
    185 schema:familyName Wijnker
    186 schema:givenName Erik
    187 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01124432620.04
    188 rdf:type schema:Person
    189 sg:person.01201103005.57 schema:affiliation https://www.grid.ac/institutes/grid.5386.8
    190 schema:familyName Bombarely
    191 schema:givenName Aureliano
    192 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201103005.57
    193 rdf:type schema:Person
    194 sg:person.01314512517.16 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    195 schema:familyName van de Geest
    196 schema:givenName Henri
    197 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01314512517.16
    198 rdf:type schema:Person
    199 sg:person.01333242600.11 schema:affiliation https://www.grid.ac/institutes/grid.5590.9
    200 schema:familyName Rieu
    201 schema:givenName Ivo
    202 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01333242600.11
    203 rdf:type schema:Person
    204 sg:person.0601210733.22 schema:affiliation https://www.grid.ac/institutes/grid.435870.d
    205 schema:familyName D’Agostino
    206 schema:givenName Nunzio
    207 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0601210733.22
    208 rdf:type schema:Person
    209 sg:person.0664670334.32 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    210 schema:familyName Golas
    211 schema:givenName Tomek
    212 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0664670334.32
    213 rdf:type schema:Person
    214 sg:person.0670531434.13 schema:affiliation https://www.grid.ac/institutes/grid.5590.9
    215 schema:familyName Driedonks
    216 schema:givenName Nicky
    217 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0670531434.13
    218 rdf:type schema:Person
    219 sg:person.0704422453.39 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    220 schema:familyName Nap
    221 schema:givenName Jan-Peter
    222 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0704422453.39
    223 rdf:type schema:Person
    224 sg:person.0734307551.16 schema:affiliation https://www.grid.ac/institutes/grid.450019.9
    225 schema:familyName Mariani
    226 schema:givenName Celestina
    227 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0734307551.16
    228 rdf:type schema:Person
    229 sg:pub.10.1007/bf01987672 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028740765
    230 https://doi.org/10.1007/bf01987672
    231 rdf:type schema:CreativeWork
    232 sg:pub.10.1007/bf02872156 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029305632
    233 https://doi.org/10.1007/bf02872156
    234 rdf:type schema:CreativeWork
    235 sg:pub.10.1007/s00122-009-1202-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034059856
    236 https://doi.org/10.1007/s00122-009-1202-3
    237 rdf:type schema:CreativeWork
    238 sg:pub.10.1007/s00122-012-1959-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010487681
    239 https://doi.org/10.1007/s00122-012-1959-7
    240 rdf:type schema:CreativeWork
    241 sg:pub.10.1007/s00606-009-0260-y schema:sameAs https://app.dimensions.ai/details/publication/pub.1024230839
    242 https://doi.org/10.1007/s00606-009-0260-y
    243 rdf:type schema:CreativeWork
    244 sg:pub.10.1038/nature10158 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002525491
    245 https://doi.org/10.1038/nature10158
    246 rdf:type schema:CreativeWork
    247 sg:pub.10.1038/nature11119 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047486795
    248 https://doi.org/10.1038/nature11119
    249 rdf:type schema:CreativeWork
    250 sg:pub.10.1038/nbt.1883 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015803168
    251 https://doi.org/10.1038/nbt.1883
    252 rdf:type schema:CreativeWork
    253 sg:pub.10.1186/1471-2105-12-85 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001043555
    254 https://doi.org/10.1186/1471-2105-12-85
    255 rdf:type schema:CreativeWork
    256 sg:pub.10.1186/1471-2105-7-438 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014338447
    257 https://doi.org/10.1186/1471-2105-7-438
    258 rdf:type schema:CreativeWork
    259 sg:pub.10.1186/1471-2105-9-374 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050869461
    260 https://doi.org/10.1186/1471-2105-9-374
    261 rdf:type schema:CreativeWork
    262 sg:pub.10.1186/1471-2164-11-182 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024439002
    263 https://doi.org/10.1186/1471-2164-11-182
    264 rdf:type schema:CreativeWork
    265 sg:pub.10.1186/1471-2164-13-281 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017027392
    266 https://doi.org/10.1186/1471-2164-13-281
    267 rdf:type schema:CreativeWork
    268 sg:pub.10.1186/1471-2164-8-424 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020897820
    269 https://doi.org/10.1186/1471-2164-8-424
    270 rdf:type schema:CreativeWork
    271 sg:pub.10.1385/1-59259-192-2:365 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023668922
    272 https://doi.org/10.1385/1-59259-192-2:365
    273 rdf:type schema:CreativeWork
    274 https://app.dimensions.ai/details/publication/pub.1074544770 schema:CreativeWork
    275 https://app.dimensions.ai/details/publication/pub.1074631098 schema:CreativeWork
    276 https://app.dimensions.ai/details/publication/pub.1074841440 schema:CreativeWork
    277 https://doi.org/10.1073/pnas.0504070102 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023582132
    278 rdf:type schema:CreativeWork
    279 https://doi.org/10.1093/aob/mcq258 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008477906
    280 rdf:type schema:CreativeWork
    281 https://doi.org/10.1093/nar/gkm321 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052015517
    282 rdf:type schema:CreativeWork
    283 https://doi.org/10.1093/nar/gkn176 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022937830
    284 rdf:type schema:CreativeWork
    285 https://doi.org/10.1093/nar/gkq1079 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038685652
    286 rdf:type schema:CreativeWork
    287 https://doi.org/10.1093/nar/gkr981 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027264776
    288 rdf:type schema:CreativeWork
    289 https://doi.org/10.1093/oxfordjournals.molbev.a026239 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028936338
    290 rdf:type schema:CreativeWork
    291 https://doi.org/10.1094/pdis-10-10-0768 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060091801
    292 rdf:type schema:CreativeWork
    293 https://doi.org/10.1101/gr.1224503 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000505228
    294 rdf:type schema:CreativeWork
    295 https://doi.org/10.1104/pp.105.060707 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036331692
    296 rdf:type schema:CreativeWork
    297 https://doi.org/10.1111/j.1365-2338.1996.tb01511.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1029853794
    298 rdf:type schema:CreativeWork
    299 https://doi.org/10.1111/j.1365-2338.1996.tb01512.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1023267516
    300 rdf:type schema:CreativeWork
    301 https://doi.org/10.1111/j.1365-2338.1998.tb00713.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1000025271
    302 rdf:type schema:CreativeWork
    303 https://doi.org/10.1111/j.1365-294x.1992.tb00182.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1022140665
    304 rdf:type schema:CreativeWork
    305 https://doi.org/10.1111/j.1365-313x.2012.05012.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1018487232
    306 rdf:type schema:CreativeWork
    307 https://doi.org/10.1111/j.1469-8137.2012.04195.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1048222844
    308 rdf:type schema:CreativeWork
    309 https://doi.org/10.1111/j.1744-7348.2011.00482.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1049661325
    310 rdf:type schema:CreativeWork
    311 https://doi.org/10.1600/036364407781179671 schema:sameAs https://app.dimensions.ai/details/publication/pub.1068114623
    312 rdf:type schema:CreativeWork
    313 https://www.grid.ac/institutes/grid.435870.d schema:alternateName Centro di Ricerca per l’Orticoltura
    314 schema:name Consiglio per la ricerca e la sperimentazione in agricoltura, Centro di ricerca per l’orticoltura, via Cavalleggeri 25, 84098, Pontecagnano, SA, Italy
    315 IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands
    316 rdf:type schema:Organization
    317 https://www.grid.ac/institutes/grid.450019.9 schema:alternateName Centre for BioSystems Genomics
    318 schema:name Applied Bioinformatics, Bioscience, Plant Research International, Wageningen University & Research Centre, PO Box 619, 6700, Wageningen, AP, The Netherlands
    319 Centre for BioSystems Genomics 2012 (CBSG2012), PO Box 98, 6700, Wageningen, AB, The Netherlands
    320 IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands
    321 rdf:type schema:Organization
    322 https://www.grid.ac/institutes/grid.4818.5 schema:alternateName Wageningen University & Research
    323 schema:name Applied Bioinformatics, Bioscience, Plant Research International, Wageningen University & Research Centre, PO Box 619, 6700, Wageningen, AP, The Netherlands
    324 Laboratory of Genetics, Wageningen University, Droevendaalsesteeg 1, 6708, Wageningen, PB, the Netherlands
    325 rdf:type schema:Organization
    326 https://www.grid.ac/institutes/grid.5386.8 schema:alternateName Cornell University
    327 schema:name Boyce Thompson Institute for Plant Research, Tower Road, 14853-1801, Ithaca, New York, USA
    328 rdf:type schema:Organization
    329 https://www.grid.ac/institutes/grid.5590.9 schema:alternateName Radboud University Nijmegen
    330 schema:name IWWR, Department of Molecular Plant Physiology, Radboud University Nijmegen, Heyendaalseweg 135, 6525, Nijmegen, AJ, The Netherlands
    331 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...