Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2010-12

AUTHORS

Christoph Mayer, Florian Leese, Ralph Tollrian

ABSTRACT

BACKGROUND: DNA tandem repeats (TRs) are not just popular molecular markers, but are also important genomic elements from an evolutionary and functional perspective. For various genomes, the densities of short TR types were shown to differ strongly among different taxa and genomic regions. In this study we analysed the TR characteristics in the genomes of Daphnia pulex and 11 other eukaryotic species. Characteristics of TRs in different genomic regions and among different strands are compared in details for D. pulex and the two model insects Apis mellifera and Drosophila melanogaster. RESULTS: Profound differences in TR characteristics were found among all 12 genomes compared in this study. In D. pulex, the genomic density of TRs was low compared to the arthropod species D. melanogaster and A. mellifera. For these three species, very few common features in repeat type usage, density distribution, and length characteristics were observed in the genomes and in different genomic regions. In introns and coding regions an unexpectedly high strandedness was observed for several repeat motifs. In D. pulex, the density of TRs was highest in introns, a rare feature in animals. In coding regions, the density of TRs with unit sizes 7-50 bp were more than three times as high as for 1-6 bp repeats. CONCLUSIONS: TRs in the genome of D. pulex show several notable features, which distinguish it from the other genomes. Altogether, the highly non-random distribution of TRs among genomes, genomic regions and even among different DNA-stands raises many questions concerning their functional and evolutionary importance. The high density of TRs with a unit size longer than 6 bp found in non-coding and coding regions underpins the importance to include longer TR units in comparative analyses. More... »

PAGES

277

References to SciGraph publications

  • 1995-02. Simple repetitive DNA sequences from primates: Compilation and analysis in JOURNAL OF MOLECULAR EVOLUTION
  • 2003-02. Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions in GENOME BIOLOGY
  • 1986-08. Cryptic simplicity in DNA is a major source of genetic variation in NATURE
  • 1995-07. Microsatellite evolution — evidence for directionality and variation in rate between species in NATURE GENETICS
  • 2006-03. Preliminary characterisation of repeat families in the genome of EhV-86, a giant algal virus that infects the marine microalga Emiliania huxleyi in ARCHIVES OF VIROLOGY
  • 2007-05. Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies in GENOME BIOLOGY
  • 2007-12. Detecting microsatellites within genomes: significant variation among algorithms in BMC BIOINFORMATICS
  • 2002-02. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes in NATURE GENETICS
  • 2007-12. Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins in BMC GENOMICS
  • 2004-06. Microsatellites: simple sequences with complex evolution in NATURE REVIEWS GENETICS
  • 2006-12. Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites in BMC PLANT BIOLOGY
  • 2000-09. Evolutionary dynamics of microsatellite DNA in CHROMOSOMA
  • 1992-10. A second-generation linkage map of the human genome in NATURE
  • 1996-03. A comprehensive genetic map of the human genome based on 5,264 microsatellites in NATURE
  • 2006-10. Insights into social insects from the genome of the honeybee Apis mellifera in NATURE
  • 2005-09. Intragenic tandem repeats generate functional variability in NATURE GENETICS
  • 2004. Tuning Function of Tandemly Repeating Sequences: A Molecular Device for Fast Adaptation in EVOLUTIONARY THEORY AND PROCESSES: MODERN HORIZONS
  • 2005-12. Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley in BMC GENOMICS
  • 2002-12. Annotation of the Drosophila melanogastereuchromatic genome: a systematic review in GENOME BIOLOGY
  • 1985-03. Hypervariable ‘minisatellite’ regions in human DNA in NATURE
  • 2006-02. Distinct patterns of SSR distribution in the Arabidopsis thalianaand rice genomes in GENOME BIOLOGY
  • 1997-04. Big, bad minisatellites in NATURE GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2164-11-277

    DOI

    http://dx.doi.org/10.1186/1471-2164-11-277

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1004318568

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/20433735


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Animals", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Base Pairing", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Base Sequence", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Cell Nucleus", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Daphnia", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genome", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Genomics", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Humans", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Mice", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Microsatellite Repeats", 
            "type": "DefinedTerm"
          }, 
          {
            "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
            "name": "Tandem Repeat Sequences", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "Ruhr University Bochum", 
              "id": "https://www.grid.ac/institutes/grid.5570.7", 
              "name": [
                "Department of Animal Ecology, Evolution and Biodiversity, Ruhr University Bochum, Universitaetsstrasse 150, 44801, Bochum, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Mayer", 
            "givenName": "Christoph", 
            "id": "sg:person.013156310340.79", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013156310340.79"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Ruhr University Bochum", 
              "id": "https://www.grid.ac/institutes/grid.5570.7", 
              "name": [
                "Department of Animal Ecology, Evolution and Biodiversity, Ruhr University Bochum, Universitaetsstrasse 150, 44801, Bochum, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Leese", 
            "givenName": "Florian", 
            "id": "sg:person.01200105506.38", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200105506.38"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "Ruhr University Bochum", 
              "id": "https://www.grid.ac/institutes/grid.5570.7", 
              "name": [
                "Department of Animal Ecology, Evolution and Biodiversity, Ruhr University Bochum, Universitaetsstrasse 150, 44801, Bochum, Germany"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Tollrian", 
            "givenName": "Ralph", 
            "id": "sg:person.01350401337.51", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350401337.51"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "https://doi.org/10.1073/pnas.122067599", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000183701"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s1872-2423(08)00005-7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1000265461"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s004120000089", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1002143426", 
              "https://doi.org/10.1007/s004120000089"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tig.2006.03.005", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003424815"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.10.7.899", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1003680769"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gki099", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1006972238"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1618", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008951384", 
              "https://doi.org/10.1038/ng1618"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng1618", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1008951384", 
              "https://doi.org/10.1038/ng1618"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/21.6.1427", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1009431349"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2002-3-12-research0083", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010099513", 
              "https://doi.org/10.1186/gb-2002-3-12-research0083"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/bioinformatics/bti059", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1010538229"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.0408118101", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1011583504"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg1348", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012004609", 
              "https://doi.org/10.1038/nrg1348"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nrg1348", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1012004609", 
              "https://doi.org/10.1038/nrg1348"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkg002", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1013951911"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1139/g02-105", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1014885426"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/322652a0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015060706", 
              "https://doi.org/10.1038/322652a0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/12.10.4127", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1015628273"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi090", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016275072"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.ygeno.2006.03.007", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1016970068"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00167107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017261591", 
              "https://doi.org/10.1007/bf00167107"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00167107", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017261591", 
              "https://doi.org/10.1007/bf00167107"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msh073", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017786519"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng0795-337", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1017899739", 
              "https://doi.org/10.1038/ng0795-337"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.10.7.967", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1018185210"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.287.5461.2185", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1019737566"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/0092-8674(90)90598-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1020923143"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msh104", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1021160985"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.febslet.2007.04.073", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1022760885"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00705-005-0647-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023331629", 
              "https://doi.org/10.1007/s00705-005-0647-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/s00705-005-0647-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1023331629", 
              "https://doi.org/10.1007/s00705-005-0647-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1073/pnas.95.18.10774", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024663822"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/359794a0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1024780178", 
              "https://doi.org/10.1038/359794a0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1046/j.1365-294x.2002.01643.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025437171"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2003-4-2-r13", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1026760445", 
              "https://doi.org/10.1186/gb-2003-4-2-r13"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-6-23", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027930349", 
              "https://doi.org/10.1186/1471-2164-6-23"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1139815", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027935478"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msh108", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029343476"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0006-291x(02)02509-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029832627"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0006-291x(02)02509-3", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1029832627"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-8-125", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031057608", 
              "https://doi.org/10.1186/1471-2105-8-125"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2105-8-125", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031057608", 
              "https://doi.org/10.1186/1471-2105-8-125"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1471-8286.2004.00721.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1031550282"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.molbev.a003903", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1032570039"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1111/j.1365-294x.1995.tb00227.x", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033482718"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature05260", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033687011", 
              "https://doi.org/10.1038/nature05260"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature05260", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033687011", 
              "https://doi.org/10.1038/nature05260"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/nature05260", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1033687011", 
              "https://doi.org/10.1038/nature05260"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/27.2.573", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035372973"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/j.tibtech.2007.07.013", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1035751075"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2229-6-9", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037442390", 
              "https://doi.org/10.1186/1471-2229-6-9"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a023114", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1037528585"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/978-94-017-0443-4_7", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039010594", 
              "https://doi.org/10.1007/978-94-017-0443-4_7"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.167.1.253", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039201337"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.167.1.253", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039201337"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.1416703", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039344017"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng0497-327", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039711046", 
              "https://doi.org/10.1038/ng0497-327"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng0497-327", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1039711046", 
              "https://doi.org/10.1038/ng0497-327"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0006-291x(03)00752-6", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1040392416"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/bies.20001", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1041472859"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1016/s0168-9525(97)01008-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042768146"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.107.081927", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042901329"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1534/genetics.107.081927", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1042901329"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng822", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043546773", 
              "https://doi.org/10.1038/ng822"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/ng822", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043546773", 
              "https://doi.org/10.1038/ng822"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1002/bies.20470", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043611805"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/molbev/msi057", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1043847729"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkm811", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1045749842"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/380152a0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1046083652", 
              "https://doi.org/10.1038/380152a0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/nar/gkl1013", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047193569"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1101/gr.3810906", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047657889"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2007-8-5-r80", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047838331", 
              "https://doi.org/10.1186/gb-2007-8-5-r80"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1038/314067a0", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1047897100", 
              "https://doi.org/10.1038/314067a0"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/1471-2164-8-477", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1048889460", 
              "https://doi.org/10.1186/1471-2164-8-477"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1186/gb-2006-7-2-r14", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1050370699", 
              "https://doi.org/10.1186/gb-2006-7-2-r14"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1086/303013", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1058610559"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1126/science.1139816", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1062455315"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://app.dimensions.ai/details/publication/pub.1074580704", 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.4137/ebo.s420", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1077847483"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.4137/ebo.s420", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1077847483"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "https://doi.org/10.1093/oxfordjournals.jhered.a111545", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1082492368"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2010-12", 
        "datePublishedReg": "2010-12-01", 
        "description": "BACKGROUND: DNA tandem repeats (TRs) are not just popular molecular markers, but are also important genomic elements from an evolutionary and functional perspective. For various genomes, the densities of short TR types were shown to differ strongly among different taxa and genomic regions. In this study we analysed the TR characteristics in the genomes of Daphnia pulex and 11 other eukaryotic species. Characteristics of TRs in different genomic regions and among different strands are compared in details for D. pulex and the two model insects Apis mellifera and Drosophila melanogaster.\nRESULTS: Profound differences in TR characteristics were found among all 12 genomes compared in this study. In D. pulex, the genomic density of TRs was low compared to the arthropod species D. melanogaster and A. mellifera. For these three species, very few common features in repeat type usage, density distribution, and length characteristics were observed in the genomes and in different genomic regions. In introns and coding regions an unexpectedly high strandedness was observed for several repeat motifs. In D. pulex, the density of TRs was highest in introns, a rare feature in animals. In coding regions, the density of TRs with unit sizes 7-50 bp were more than three times as high as for 1-6 bp repeats.\nCONCLUSIONS: TRs in the genome of D. pulex show several notable features, which distinguish it from the other genomes. Altogether, the highly non-random distribution of TRs among genomes, genomic regions and even among different DNA-stands raises many questions concerning their functional and evolutionary importance. The high density of TRs with a unit size longer than 6 bp found in non-coding and coding regions underpins the importance to include longer TR units in comparative analyses.", 
        "genre": "research_article", 
        "id": "sg:pub.10.1186/1471-2164-11-277", 
        "inLanguage": [
          "en"
        ], 
        "isAccessibleForFree": true, 
        "isPartOf": [
          {
            "id": "sg:journal.1023790", 
            "issn": [
              "1471-2164"
            ], 
            "name": "BMC Genomics", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "1", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "11"
          }
        ], 
        "name": "Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach", 
        "pagination": "277", 
        "productId": [
          {
            "name": "readcube_id", 
            "type": "PropertyValue", 
            "value": [
              "1493c300c434c810539fdc261a655aacab24cd645cf97143f7d31279b8ba4053"
            ]
          }, 
          {
            "name": "pubmed_id", 
            "type": "PropertyValue", 
            "value": [
              "20433735"
            ]
          }, 
          {
            "name": "nlm_unique_id", 
            "type": "PropertyValue", 
            "value": [
              "100965258"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1186/1471-2164-11-277"
            ]
          }, 
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1004318568"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1186/1471-2164-11-277", 
          "https://app.dimensions.ai/details/publication/pub.1004318568"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2019-04-10T14:58", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8663_00000503.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "http://link.springer.com/10.1186%2F1471-2164-11-277"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-11-277'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-11-277'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-11-277'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2164-11-277'


     

    This table displays all metadata directly associated to this object as RDF triples.

    351 TRIPLES      21 PREDICATES      108 URIs      32 LITERALS      20 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1186/1471-2164-11-277 schema:about N0d1e9c07a911492b8ef8cb2a03011d3e
    2 N32cc72e53a0f4167bb651c7d7199ba56
    3 N3e54f10cfee44456bac34bf689960845
    4 N478f2cd6faf6466b9d93a1f8ebb54652
    5 N4c9b5c18f58f4bfea275a22b64e325be
    6 N594611d9072f4c09b649bef41e6a5fe5
    7 N5adb8382f7ff48489ab5ec2c925cae3c
    8 N81b66abe0b704c1b82b6efddb3745a0a
    9 Nb43356fd0e954d10a2123d3cd18d9ff8
    10 Nfd284f514dc047bd83a157c458bfcbed
    11 Nfe940e542f86424fae35d9e7a0c45687
    12 anzsrc-for:06
    13 anzsrc-for:0604
    14 schema:author Nceee2342be8f4a0f9750532cc01bce71
    15 schema:citation sg:pub.10.1007/978-94-017-0443-4_7
    16 sg:pub.10.1007/bf00167107
    17 sg:pub.10.1007/s004120000089
    18 sg:pub.10.1007/s00705-005-0647-1
    19 sg:pub.10.1038/314067a0
    20 sg:pub.10.1038/322652a0
    21 sg:pub.10.1038/359794a0
    22 sg:pub.10.1038/380152a0
    23 sg:pub.10.1038/nature05260
    24 sg:pub.10.1038/ng0497-327
    25 sg:pub.10.1038/ng0795-337
    26 sg:pub.10.1038/ng1618
    27 sg:pub.10.1038/ng822
    28 sg:pub.10.1038/nrg1348
    29 sg:pub.10.1186/1471-2105-8-125
    30 sg:pub.10.1186/1471-2164-6-23
    31 sg:pub.10.1186/1471-2164-8-477
    32 sg:pub.10.1186/1471-2229-6-9
    33 sg:pub.10.1186/gb-2002-3-12-research0083
    34 sg:pub.10.1186/gb-2003-4-2-r13
    35 sg:pub.10.1186/gb-2006-7-2-r14
    36 sg:pub.10.1186/gb-2007-8-5-r80
    37 https://app.dimensions.ai/details/publication/pub.1074580704
    38 https://doi.org/10.1002/bies.20001
    39 https://doi.org/10.1002/bies.20470
    40 https://doi.org/10.1016/0092-8674(90)90598-9
    41 https://doi.org/10.1016/j.febslet.2007.04.073
    42 https://doi.org/10.1016/j.tibtech.2007.07.013
    43 https://doi.org/10.1016/j.tig.2006.03.005
    44 https://doi.org/10.1016/j.ygeno.2006.03.007
    45 https://doi.org/10.1016/s0006-291x(02)02509-3
    46 https://doi.org/10.1016/s0006-291x(03)00752-6
    47 https://doi.org/10.1016/s0168-9525(97)01008-1
    48 https://doi.org/10.1016/s1872-2423(08)00005-7
    49 https://doi.org/10.1046/j.1365-294x.2002.01643.x
    50 https://doi.org/10.1073/pnas.0408118101
    51 https://doi.org/10.1073/pnas.122067599
    52 https://doi.org/10.1073/pnas.95.18.10774
    53 https://doi.org/10.1086/303013
    54 https://doi.org/10.1093/bioinformatics/bti059
    55 https://doi.org/10.1093/molbev/msh073
    56 https://doi.org/10.1093/molbev/msh104
    57 https://doi.org/10.1093/molbev/msh108
    58 https://doi.org/10.1093/molbev/msi057
    59 https://doi.org/10.1093/molbev/msi090
    60 https://doi.org/10.1093/nar/12.10.4127
    61 https://doi.org/10.1093/nar/21.6.1427
    62 https://doi.org/10.1093/nar/27.2.573
    63 https://doi.org/10.1093/nar/gkg002
    64 https://doi.org/10.1093/nar/gki099
    65 https://doi.org/10.1093/nar/gkl1013
    66 https://doi.org/10.1093/nar/gkm811
    67 https://doi.org/10.1093/oxfordjournals.jhered.a023114
    68 https://doi.org/10.1093/oxfordjournals.jhered.a111545
    69 https://doi.org/10.1093/oxfordjournals.molbev.a003903
    70 https://doi.org/10.1101/gr.10.7.899
    71 https://doi.org/10.1101/gr.10.7.967
    72 https://doi.org/10.1101/gr.1416703
    73 https://doi.org/10.1101/gr.3810906
    74 https://doi.org/10.1111/j.1365-294x.1995.tb00227.x
    75 https://doi.org/10.1111/j.1471-8286.2004.00721.x
    76 https://doi.org/10.1126/science.1139815
    77 https://doi.org/10.1126/science.1139816
    78 https://doi.org/10.1126/science.287.5461.2185
    79 https://doi.org/10.1139/g02-105
    80 https://doi.org/10.1534/genetics.107.081927
    81 https://doi.org/10.1534/genetics.167.1.253
    82 https://doi.org/10.4137/ebo.s420
    83 schema:datePublished 2010-12
    84 schema:datePublishedReg 2010-12-01
    85 schema:description BACKGROUND: DNA tandem repeats (TRs) are not just popular molecular markers, but are also important genomic elements from an evolutionary and functional perspective. For various genomes, the densities of short TR types were shown to differ strongly among different taxa and genomic regions. In this study we analysed the TR characteristics in the genomes of Daphnia pulex and 11 other eukaryotic species. Characteristics of TRs in different genomic regions and among different strands are compared in details for D. pulex and the two model insects Apis mellifera and Drosophila melanogaster. RESULTS: Profound differences in TR characteristics were found among all 12 genomes compared in this study. In D. pulex, the genomic density of TRs was low compared to the arthropod species D. melanogaster and A. mellifera. For these three species, very few common features in repeat type usage, density distribution, and length characteristics were observed in the genomes and in different genomic regions. In introns and coding regions an unexpectedly high strandedness was observed for several repeat motifs. In D. pulex, the density of TRs was highest in introns, a rare feature in animals. In coding regions, the density of TRs with unit sizes 7-50 bp were more than three times as high as for 1-6 bp repeats. CONCLUSIONS: TRs in the genome of D. pulex show several notable features, which distinguish it from the other genomes. Altogether, the highly non-random distribution of TRs among genomes, genomic regions and even among different DNA-stands raises many questions concerning their functional and evolutionary importance. The high density of TRs with a unit size longer than 6 bp found in non-coding and coding regions underpins the importance to include longer TR units in comparative analyses.
    86 schema:genre research_article
    87 schema:inLanguage en
    88 schema:isAccessibleForFree true
    89 schema:isPartOf N33ee423bee684241894c1268bb05009f
    90 Nc2289bee0258464bbb9d78529b646abb
    91 sg:journal.1023790
    92 schema:name Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
    93 schema:pagination 277
    94 schema:productId N007694b4cd934c1ba45a9ac62275c88a
    95 N89e4c179872f4447a07bff9eca251526
    96 Ncd5ca20b393f40639983cdd72391dd00
    97 Nd68051d5a5dc4872a7ddf9a8bd9df988
    98 Ne84a63574efd4ab1b1018e9850e5b0ac
    99 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004318568
    100 https://doi.org/10.1186/1471-2164-11-277
    101 schema:sdDatePublished 2019-04-10T14:58
    102 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    103 schema:sdPublisher Ndaa0a408b4c549c1bc0bffeed232da28
    104 schema:url http://link.springer.com/10.1186%2F1471-2164-11-277
    105 sgo:license sg:explorer/license/
    106 sgo:sdDataset articles
    107 rdf:type schema:ScholarlyArticle
    108 N007694b4cd934c1ba45a9ac62275c88a schema:name readcube_id
    109 schema:value 1493c300c434c810539fdc261a655aacab24cd645cf97143f7d31279b8ba4053
    110 rdf:type schema:PropertyValue
    111 N0d1e9c07a911492b8ef8cb2a03011d3e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    112 schema:name Microsatellite Repeats
    113 rdf:type schema:DefinedTerm
    114 N109782abbdad48f58b206c56fd0812e5 rdf:first sg:person.01200105506.38
    115 rdf:rest Nab168b8e23a441c194479f40dcb8e724
    116 N32cc72e53a0f4167bb651c7d7199ba56 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    117 schema:name Daphnia
    118 rdf:type schema:DefinedTerm
    119 N33ee423bee684241894c1268bb05009f schema:volumeNumber 11
    120 rdf:type schema:PublicationVolume
    121 N3e54f10cfee44456bac34bf689960845 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    122 schema:name Animals
    123 rdf:type schema:DefinedTerm
    124 N478f2cd6faf6466b9d93a1f8ebb54652 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    125 schema:name Humans
    126 rdf:type schema:DefinedTerm
    127 N4c9b5c18f58f4bfea275a22b64e325be schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    128 schema:name Cell Nucleus
    129 rdf:type schema:DefinedTerm
    130 N594611d9072f4c09b649bef41e6a5fe5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    131 schema:name Genomics
    132 rdf:type schema:DefinedTerm
    133 N5adb8382f7ff48489ab5ec2c925cae3c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    134 schema:name Base Sequence
    135 rdf:type schema:DefinedTerm
    136 N81b66abe0b704c1b82b6efddb3745a0a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    137 schema:name Genome
    138 rdf:type schema:DefinedTerm
    139 N89e4c179872f4447a07bff9eca251526 schema:name dimensions_id
    140 schema:value pub.1004318568
    141 rdf:type schema:PropertyValue
    142 Nab168b8e23a441c194479f40dcb8e724 rdf:first sg:person.01350401337.51
    143 rdf:rest rdf:nil
    144 Nb43356fd0e954d10a2123d3cd18d9ff8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    145 schema:name Mice
    146 rdf:type schema:DefinedTerm
    147 Nc2289bee0258464bbb9d78529b646abb schema:issueNumber 1
    148 rdf:type schema:PublicationIssue
    149 Ncd5ca20b393f40639983cdd72391dd00 schema:name nlm_unique_id
    150 schema:value 100965258
    151 rdf:type schema:PropertyValue
    152 Nceee2342be8f4a0f9750532cc01bce71 rdf:first sg:person.013156310340.79
    153 rdf:rest N109782abbdad48f58b206c56fd0812e5
    154 Nd68051d5a5dc4872a7ddf9a8bd9df988 schema:name doi
    155 schema:value 10.1186/1471-2164-11-277
    156 rdf:type schema:PropertyValue
    157 Ndaa0a408b4c549c1bc0bffeed232da28 schema:name Springer Nature - SN SciGraph project
    158 rdf:type schema:Organization
    159 Ne84a63574efd4ab1b1018e9850e5b0ac schema:name pubmed_id
    160 schema:value 20433735
    161 rdf:type schema:PropertyValue
    162 Nfd284f514dc047bd83a157c458bfcbed schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    163 schema:name Base Pairing
    164 rdf:type schema:DefinedTerm
    165 Nfe940e542f86424fae35d9e7a0c45687 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
    166 schema:name Tandem Repeat Sequences
    167 rdf:type schema:DefinedTerm
    168 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    169 schema:name Biological Sciences
    170 rdf:type schema:DefinedTerm
    171 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    172 schema:name Genetics
    173 rdf:type schema:DefinedTerm
    174 sg:journal.1023790 schema:issn 1471-2164
    175 schema:name BMC Genomics
    176 rdf:type schema:Periodical
    177 sg:person.01200105506.38 schema:affiliation https://www.grid.ac/institutes/grid.5570.7
    178 schema:familyName Leese
    179 schema:givenName Florian
    180 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01200105506.38
    181 rdf:type schema:Person
    182 sg:person.013156310340.79 schema:affiliation https://www.grid.ac/institutes/grid.5570.7
    183 schema:familyName Mayer
    184 schema:givenName Christoph
    185 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013156310340.79
    186 rdf:type schema:Person
    187 sg:person.01350401337.51 schema:affiliation https://www.grid.ac/institutes/grid.5570.7
    188 schema:familyName Tollrian
    189 schema:givenName Ralph
    190 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01350401337.51
    191 rdf:type schema:Person
    192 sg:pub.10.1007/978-94-017-0443-4_7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039010594
    193 https://doi.org/10.1007/978-94-017-0443-4_7
    194 rdf:type schema:CreativeWork
    195 sg:pub.10.1007/bf00167107 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017261591
    196 https://doi.org/10.1007/bf00167107
    197 rdf:type schema:CreativeWork
    198 sg:pub.10.1007/s004120000089 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002143426
    199 https://doi.org/10.1007/s004120000089
    200 rdf:type schema:CreativeWork
    201 sg:pub.10.1007/s00705-005-0647-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023331629
    202 https://doi.org/10.1007/s00705-005-0647-1
    203 rdf:type schema:CreativeWork
    204 sg:pub.10.1038/314067a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047897100
    205 https://doi.org/10.1038/314067a0
    206 rdf:type schema:CreativeWork
    207 sg:pub.10.1038/322652a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015060706
    208 https://doi.org/10.1038/322652a0
    209 rdf:type schema:CreativeWork
    210 sg:pub.10.1038/359794a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024780178
    211 https://doi.org/10.1038/359794a0
    212 rdf:type schema:CreativeWork
    213 sg:pub.10.1038/380152a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046083652
    214 https://doi.org/10.1038/380152a0
    215 rdf:type schema:CreativeWork
    216 sg:pub.10.1038/nature05260 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033687011
    217 https://doi.org/10.1038/nature05260
    218 rdf:type schema:CreativeWork
    219 sg:pub.10.1038/ng0497-327 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039711046
    220 https://doi.org/10.1038/ng0497-327
    221 rdf:type schema:CreativeWork
    222 sg:pub.10.1038/ng0795-337 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017899739
    223 https://doi.org/10.1038/ng0795-337
    224 rdf:type schema:CreativeWork
    225 sg:pub.10.1038/ng1618 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008951384
    226 https://doi.org/10.1038/ng1618
    227 rdf:type schema:CreativeWork
    228 sg:pub.10.1038/ng822 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043546773
    229 https://doi.org/10.1038/ng822
    230 rdf:type schema:CreativeWork
    231 sg:pub.10.1038/nrg1348 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012004609
    232 https://doi.org/10.1038/nrg1348
    233 rdf:type schema:CreativeWork
    234 sg:pub.10.1186/1471-2105-8-125 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031057608
    235 https://doi.org/10.1186/1471-2105-8-125
    236 rdf:type schema:CreativeWork
    237 sg:pub.10.1186/1471-2164-6-23 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027930349
    238 https://doi.org/10.1186/1471-2164-6-23
    239 rdf:type schema:CreativeWork
    240 sg:pub.10.1186/1471-2164-8-477 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048889460
    241 https://doi.org/10.1186/1471-2164-8-477
    242 rdf:type schema:CreativeWork
    243 sg:pub.10.1186/1471-2229-6-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037442390
    244 https://doi.org/10.1186/1471-2229-6-9
    245 rdf:type schema:CreativeWork
    246 sg:pub.10.1186/gb-2002-3-12-research0083 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010099513
    247 https://doi.org/10.1186/gb-2002-3-12-research0083
    248 rdf:type schema:CreativeWork
    249 sg:pub.10.1186/gb-2003-4-2-r13 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026760445
    250 https://doi.org/10.1186/gb-2003-4-2-r13
    251 rdf:type schema:CreativeWork
    252 sg:pub.10.1186/gb-2006-7-2-r14 schema:sameAs https://app.dimensions.ai/details/publication/pub.1050370699
    253 https://doi.org/10.1186/gb-2006-7-2-r14
    254 rdf:type schema:CreativeWork
    255 sg:pub.10.1186/gb-2007-8-5-r80 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047838331
    256 https://doi.org/10.1186/gb-2007-8-5-r80
    257 rdf:type schema:CreativeWork
    258 https://app.dimensions.ai/details/publication/pub.1074580704 schema:CreativeWork
    259 https://doi.org/10.1002/bies.20001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041472859
    260 rdf:type schema:CreativeWork
    261 https://doi.org/10.1002/bies.20470 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043611805
    262 rdf:type schema:CreativeWork
    263 https://doi.org/10.1016/0092-8674(90)90598-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020923143
    264 rdf:type schema:CreativeWork
    265 https://doi.org/10.1016/j.febslet.2007.04.073 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022760885
    266 rdf:type schema:CreativeWork
    267 https://doi.org/10.1016/j.tibtech.2007.07.013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035751075
    268 rdf:type schema:CreativeWork
    269 https://doi.org/10.1016/j.tig.2006.03.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003424815
    270 rdf:type schema:CreativeWork
    271 https://doi.org/10.1016/j.ygeno.2006.03.007 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016970068
    272 rdf:type schema:CreativeWork
    273 https://doi.org/10.1016/s0006-291x(02)02509-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029832627
    274 rdf:type schema:CreativeWork
    275 https://doi.org/10.1016/s0006-291x(03)00752-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040392416
    276 rdf:type schema:CreativeWork
    277 https://doi.org/10.1016/s0168-9525(97)01008-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042768146
    278 rdf:type schema:CreativeWork
    279 https://doi.org/10.1016/s1872-2423(08)00005-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000265461
    280 rdf:type schema:CreativeWork
    281 https://doi.org/10.1046/j.1365-294x.2002.01643.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1025437171
    282 rdf:type schema:CreativeWork
    283 https://doi.org/10.1073/pnas.0408118101 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011583504
    284 rdf:type schema:CreativeWork
    285 https://doi.org/10.1073/pnas.122067599 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000183701
    286 rdf:type schema:CreativeWork
    287 https://doi.org/10.1073/pnas.95.18.10774 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024663822
    288 rdf:type schema:CreativeWork
    289 https://doi.org/10.1086/303013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058610559
    290 rdf:type schema:CreativeWork
    291 https://doi.org/10.1093/bioinformatics/bti059 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010538229
    292 rdf:type schema:CreativeWork
    293 https://doi.org/10.1093/molbev/msh073 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017786519
    294 rdf:type schema:CreativeWork
    295 https://doi.org/10.1093/molbev/msh104 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021160985
    296 rdf:type schema:CreativeWork
    297 https://doi.org/10.1093/molbev/msh108 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029343476
    298 rdf:type schema:CreativeWork
    299 https://doi.org/10.1093/molbev/msi057 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043847729
    300 rdf:type schema:CreativeWork
    301 https://doi.org/10.1093/molbev/msi090 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016275072
    302 rdf:type schema:CreativeWork
    303 https://doi.org/10.1093/nar/12.10.4127 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015628273
    304 rdf:type schema:CreativeWork
    305 https://doi.org/10.1093/nar/21.6.1427 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009431349
    306 rdf:type schema:CreativeWork
    307 https://doi.org/10.1093/nar/27.2.573 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035372973
    308 rdf:type schema:CreativeWork
    309 https://doi.org/10.1093/nar/gkg002 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013951911
    310 rdf:type schema:CreativeWork
    311 https://doi.org/10.1093/nar/gki099 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006972238
    312 rdf:type schema:CreativeWork
    313 https://doi.org/10.1093/nar/gkl1013 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047193569
    314 rdf:type schema:CreativeWork
    315 https://doi.org/10.1093/nar/gkm811 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045749842
    316 rdf:type schema:CreativeWork
    317 https://doi.org/10.1093/oxfordjournals.jhered.a023114 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037528585
    318 rdf:type schema:CreativeWork
    319 https://doi.org/10.1093/oxfordjournals.jhered.a111545 schema:sameAs https://app.dimensions.ai/details/publication/pub.1082492368
    320 rdf:type schema:CreativeWork
    321 https://doi.org/10.1093/oxfordjournals.molbev.a003903 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032570039
    322 rdf:type schema:CreativeWork
    323 https://doi.org/10.1101/gr.10.7.899 schema:sameAs https://app.dimensions.ai/details/publication/pub.1003680769
    324 rdf:type schema:CreativeWork
    325 https://doi.org/10.1101/gr.10.7.967 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018185210
    326 rdf:type schema:CreativeWork
    327 https://doi.org/10.1101/gr.1416703 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039344017
    328 rdf:type schema:CreativeWork
    329 https://doi.org/10.1101/gr.3810906 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047657889
    330 rdf:type schema:CreativeWork
    331 https://doi.org/10.1111/j.1365-294x.1995.tb00227.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1033482718
    332 rdf:type schema:CreativeWork
    333 https://doi.org/10.1111/j.1471-8286.2004.00721.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1031550282
    334 rdf:type schema:CreativeWork
    335 https://doi.org/10.1126/science.1139815 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027935478
    336 rdf:type schema:CreativeWork
    337 https://doi.org/10.1126/science.1139816 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062455315
    338 rdf:type schema:CreativeWork
    339 https://doi.org/10.1126/science.287.5461.2185 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019737566
    340 rdf:type schema:CreativeWork
    341 https://doi.org/10.1139/g02-105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014885426
    342 rdf:type schema:CreativeWork
    343 https://doi.org/10.1534/genetics.107.081927 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042901329
    344 rdf:type schema:CreativeWork
    345 https://doi.org/10.1534/genetics.167.1.253 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039201337
    346 rdf:type schema:CreativeWork
    347 https://doi.org/10.4137/ebo.s420 schema:sameAs https://app.dimensions.ai/details/publication/pub.1077847483
    348 rdf:type schema:CreativeWork
    349 https://www.grid.ac/institutes/grid.5570.7 schema:alternateName Ruhr University Bochum
    350 schema:name Department of Animal Ecology, Evolution and Biodiversity, Ruhr University Bochum, Universitaetsstrasse 150, 44801, Bochum, Germany
    351 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...