Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2009-12

AUTHORS

HyeRan Kim, Su Ryun Choi, Jina Bae, Chang Pyo Hong, Seo Yeon Lee, Md Jamil Hossain, Dan Van Nguyen, Mina Jin, Beom-Seok Park, Jea-Wook Bang, Ian Bancroft, Yong Pyo Lim

ABSTRACT

BACKGROUND: In view of the immense value of Brassica rapa in the fields of agriculture and molecular biology, the multinational Brassica rapa Genome Sequencing Project (BrGSP) was launched in 2003 by five countries. The developing BrGSP has valuable resources for the community, including a reference genetic map and seed BAC sequences. Although the initial B. rapa linkage map served as a reference for the BrGSP, there was ambiguity in reconciling the linkage groups with the ten chromosomes of B. rapa. Consequently, the BrGSP assigned each of the linkage groups to the project members as chromosome substitutes for sequencing. RESULTS: We identified simple sequence repeat (SSR) motifs in the B. rapa genome with the sequences of seed BACs used for the BrGSP. By testing 749 amplicons containing SSR motifs, we identified polymorphisms that enabled the anchoring of 188 BACs onto the B. rapa reference linkage map consisting of 719 loci in the 10 linkage groups with an average distance of 1.6 cM between adjacent loci. The anchored BAC sequences enabled the identification of 30 blocks of conserved synteny, totaling 534.9 cM in length, between the genomes of B. rapa and Arabidopsis thaliana. Most of these were consistent with previously reported duplication and rearrangement events that differentiate these genomes. However, we were able to identify the collinear regions for seven additional previously uncharacterized sections of the A genome. Integration of the linkage map with the B. rapa cytogenetic map was accomplished by FISH with probes representing 20 BAC clones, along with probes for rDNA and centromeric repeat sequences. This integration enabled unambiguous alignment and orientation of the maps representing the 10 B. rapa chromosomes. CONCLUSION: We developed a second generation reference linkage map for B. rapa, which was aligned unambiguously to the B. rapa cytogenetic map. Furthermore, using our data, we confirmed and extended the comparative genome analysis between B. rapa and A. thaliana. This work will serve as a basis for integrating the genetic, physical, and chromosome maps of the BrGSP, as well as for studies on polyploidization, speciation, and genome duplication in the genus Brassica. More... »

PAGES

432

References to SciGraph publications

  • 2008-12. Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes in BMC GENOMICS
  • 1999-05. Rates of Nucleotide Substitution in Angiosperm Mitochondrial DNA Sequences and Dates of Divergence Between Brassica and Other Angiosperm Lineages in JOURNAL OF MOLECULAR EVOLUTION
  • 2008-12. The first generation of a BAC-based physical map of Brassica rapa in BMC GENOMICS
  • 1996-08. The morphology, cytology, and C-banded karyotypes of Brassica campestris, B. oleracea, and B. napus plants regenerated from protoplasts in THEORETICAL AND APPLIED GENETICS
  • 2008. Genscan in ENCYCLOPEDIA OF GENETICS, GENOMICS, PROTEOMICS AND INFORMATICS
  • 2005-12. Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release in BMC BIOLOGY
  • 2004-11. A high-resolution karyotype of Brassica rapa ssp. pekinensis revealed by pachytene analysis and multicolor fluorescence in situ hybridization in THEORETICAL AND APPLIED GENETICS
  • 1994-06. A New Method for Differential Staining of Brassica Metaphase Chromosomes, and Karyotypes of B. Campestris, B. Oleracea, and B. Napus in HEREDITAS
  • 2005-12. Physical mapping and microsynteny of Brassica rapa ssp. pekinensis genome corresponding to a 222 kbp gene-rich region of Arabidopsis chromosome 4 and partially duplicated on chromosome 5 in MOLECULAR GENETICS AND GENOMICS
  • 2009. Cross Match in ENCYCLOPEDIA OF CANCER
  • 1992-02. Isolation of plant DNA: A fast, inexpensive, and reliable method in PLANT MOLECULAR BIOLOGY REPORTER
  • 2007-10. The reference genetic linkage map for the multinational Brassica rapa genome sequencing project in THEORETICAL AND APPLIED GENETICS
  • 2008. Repbase in ENCYCLOPEDIA OF GENETICS, GENOMICS, PROTEOMICS AND INFORMATICS
  • 1964-12. NOMENCLATURE FOR CENTROMERIC POSITION ON CHROMOSOMES in HEREDITAS
  • 2001-02. Integration of cytogenetic landmarks into the draft sequence of the human genome in NATURE
  • 1996-09. High-resolution mapping on pachytene chromosomes and extended DNA fibres by fluorescencein-situ hybridisation in PLANT MOLECULAR BIOLOGY REPORTER
  • 2002-03. Identifying the chromosomes of the A- and C-genome diploid Brassica species B. rapa (syn. campestris) and B. oleracea in their amphidiploid B. napus in THEORETICAL AND APPLIED GENETICS
  • 2001-08. Additional locus of rDNA sequence specific to the X chromosome of the liverwort, Marchantia polymorpha in CHROMOSOME RESEARCH
  • 1998-03. Quantitative karyotyping of three diploid Brassica species by imaging methods and localization of 45s rDNA loci on the identified chromosomes in THEORETICAL AND APPLIED GENETICS
  • 2001-03. Brassica genomics: a complement to, and early beneficiary of, the Arabidopsissequence in GENOME BIOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1186/1471-2164-10-432

    DOI

    http://dx.doi.org/10.1186/1471-2164-10-432

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1049898223

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/19751531


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