Ontology type: schema:ScholarlyArticle Open Access: True
2006-01-12
AUTHORSMitsuru Miwa, Miho Inoue-Murayama, Naoki Kobayashi, Boniface Baboreka Kayang, Makoto Mizutani, Hideaki Takahashi, Shin'ichi Ito
ABSTRACTBackgroundPanda (s) is an autosomal recessive mutation, which displays overall white plumage color with spots of wild-type plumage in the Japanese quail (Coturnix japonica). In a previous study, the s locus was included in the same linkage group as serum albumin (Alb) and vitamin-D binding protein (GC) which are mapped on chicken (Gallus gallus) chromosome 4 (GGA4). In this study, we mapped the s locus on the microsatellite linkage map of the Japanese quail by linkage analysis.ResultsSegregation data on the s locus were obtained from three-generation families (n = 106). Two microsatellite markers derived from the Japanese quail chromosome 4 (CJA04) and three microsatellite markers derived from GGA4 were genotyped in the three-generation families. We mapped the s locus between GUJ0026 and ABR0544 on CJA04. By comparative mapping with chicken, this locus was mapped between 10.0 Mb and 14.5 Mb region on GGA4. In this region, the endothelin receptor B subtype 2 gene (EDNRB2), an avian-specific paralog of the mammalian endothelin receptor B gene (EDNRB), is located. Because EDNRB is responsible for aganglionic megacolon and spot coat color in mouse, rat and equine, EDNRB2 is suggested to be a candidate gene for the s locus.ConclusionThe s locus and the five microsatellite markers were mapped on CJA04 of the Japanese quail. EDNRB2 was suggested to be a candidate gene for the s locus. More... »
PAGES2
http://scigraph.springernature.com/pub.10.1186/1471-2156-7-2
DOIhttp://dx.doi.org/10.1186/1471-2156-7-2
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1030923548
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/16405738
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chickens",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chromosome Mapping",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Coturnix",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Feathers",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genes, Recessive",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genetic Linkage",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microsatellite Repeats",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Pigmentation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polymerase Chain Reaction",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Receptor, Endothelin B",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan",
"id": "http://www.grid.ac/institutes/grid.256342.4",
"name": [
"Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan"
],
"type": "Organization"
},
"familyName": "Miwa",
"givenName": "Mitsuru",
"id": "sg:person.01203552107.13",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01203552107.13"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan",
"id": "http://www.grid.ac/institutes/grid.256342.4",
"name": [
"Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan"
],
"type": "Organization"
},
"familyName": "Inoue-Murayama",
"givenName": "Miho",
"id": "sg:person.0767625310.05",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0767625310.05"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan",
"id": "http://www.grid.ac/institutes/grid.256342.4",
"name": [
"Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan"
],
"type": "Organization"
},
"familyName": "Kobayashi",
"givenName": "Naoki",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Animal Science, College of Agriculture and Consumer Sciences, University of Ghana, Legon, Ghana",
"id": "http://www.grid.ac/institutes/grid.8652.9",
"name": [
"Department of Animal Science, College of Agriculture and Consumer Sciences, University of Ghana, Legon, Ghana"
],
"type": "Organization"
},
"familyName": "Kayang",
"givenName": "Boniface Baboreka",
"id": "sg:person.01055025053.00",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01055025053.00"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Graduate School of Bioagricultural Sciences, Nagoya University, 464-8601, Nagoya, Japan",
"id": "http://www.grid.ac/institutes/grid.27476.30",
"name": [
"Graduate School of Bioagricultural Sciences, Nagoya University, 464-8601, Nagoya, Japan"
],
"type": "Organization"
},
"familyName": "Mizutani",
"givenName": "Makoto",
"id": "sg:person.01145351033.23",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01145351033.23"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan",
"id": "http://www.grid.ac/institutes/grid.410590.9",
"name": [
"National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan"
],
"type": "Organization"
},
"familyName": "Takahashi",
"givenName": "Hideaki",
"id": "sg:person.01031122433.36",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01031122433.36"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan",
"id": "http://www.grid.ac/institutes/grid.256342.4",
"name": [
"Faculty of Applied Biological Sciences, Gifu University, 501-1193, Gifu, Japan"
],
"type": "Organization"
},
"familyName": "Ito",
"givenName": "Shin'ichi",
"id": "sg:person.011673355612.81",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011673355612.81"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1186/1471-2164-6-87",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028056074",
"https://doi.org/10.1186/1471-2164-6-87"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nature03154",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006367901",
"https://doi.org/10.1038/nature03154"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s003359900790",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008683383",
"https://doi.org/10.1007/s003359900790"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1297-9686-34-2-233",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019783778",
"https://doi.org/10.1186/1297-9686-34-2-233"
],
"type": "CreativeWork"
}
],
"datePublished": "2006-01-12",
"datePublishedReg": "2006-01-12",
"description": "BackgroundPanda (s) is an autosomal recessive mutation, which displays overall white plumage color with spots of wild-type plumage in the Japanese quail (Coturnix japonica). In a previous study, the s locus was included in the same linkage group as serum albumin (Alb) and vitamin-D binding protein (GC) which are mapped on chicken (Gallus gallus) chromosome 4 (GGA4). In this study, we mapped the s locus on the microsatellite linkage map of the Japanese quail by linkage analysis.ResultsSegregation data on the s locus were obtained from three-generation families (n = 106). Two microsatellite markers derived from the Japanese quail chromosome 4 (CJA04) and three microsatellite markers derived from GGA4 were genotyped in the three-generation families. We mapped the s locus between GUJ0026 and ABR0544 on CJA04. By comparative mapping with chicken, this locus was mapped between 10.0 Mb and 14.5 Mb region on GGA4. In this region, the endothelin receptor B subtype 2 gene (EDNRB2), an avian-specific paralog of the mammalian endothelin receptor B gene (EDNRB), is located. Because EDNRB is responsible for aganglionic megacolon and spot coat color in mouse, rat and equine, EDNRB2 is suggested to be a candidate gene for the s locus.ConclusionThe s locus and the five microsatellite markers were mapped on CJA04 of the Japanese quail. EDNRB2 was suggested to be a candidate gene for the s locus.",
"genre": "article",
"id": "sg:pub.10.1186/1471-2156-7-2",
"isAccessibleForFree": true,
"isPartOf": [
{
"id": "sg:journal.1412144",
"issn": [
"2730-6844"
],
"name": "BMC Genomic Data",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "7"
}
],
"keywords": [
"endothelin receptor B gene",
"microsatellite linkage map",
"S-locus",
"microsatellite markers",
"linkage map",
"chromosome 4",
"candidate genes",
"chicken chromosome 4",
"same linkage group",
"wild-type plumage",
"three-generation family",
"white plumage color",
"comparative mapping",
"linkage groups",
"plumage color",
"b gene",
"color locus",
"Mb region",
"recessive mutations",
"linkage analysis",
"autosomal recessive mutation",
"Japanese quail",
"binding protein",
"coat color",
"loci",
"genes",
"EDNRB2",
"GGA4",
"aganglionic megacolon",
"vitamin D binding protein",
"quail",
"paralogs",
"plumage",
"family",
"markers",
"protein",
"mutations",
"previous studies",
"region",
"mapping",
"MB",
"chickens",
"equine",
"mice",
"serum albumin",
"maps",
"spots",
"color",
"study",
"analysis",
"albumin",
"data",
"megacolon",
"group",
"rats"
],
"name": "Mapping of panda plumage color locus on the microsatellite linkage map of the Japanese quail",
"pagination": "2",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1030923548"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1186/1471-2156-7-2"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"16405738"
]
}
],
"sameAs": [
"https://doi.org/10.1186/1471-2156-7-2",
"https://app.dimensions.ai/details/publication/pub.1030923548"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T16:55",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_428.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1186/1471-2156-7-2"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2156-7-2'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2156-7-2'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2156-7-2'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2156-7-2'
This table displays all metadata directly associated to this object as RDF triples.
229 TRIPLES
21 PREDICATES
96 URIs
84 LITERALS
19 BLANK NODES