Genome-wide acceleration of protein evolution in flies (Diptera) View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-12

AUTHORS

Joël Savard, Diethard Tautz, Martin J Lercher

ABSTRACT

BACKGROUND: The rate of molecular evolution varies widely between proteins, both within and among lineages. To what extent is this variation influenced by genome-wide, lineage-specific effects? To answer this question, we assess the rate variation between insect lineages for a large number of orthologous genes. RESULTS: When compared to the beetle Tribolium castaneum, we find that the stem lineage of flies and mosquitoes (Diptera) has experienced on average a 3-fold increase in the rate of evolution. Pairwise gene comparisons between Drosophila and Tribolium show a high correlation between evolutionary rates of orthologous proteins. CONCLUSION: Gene specific divergence rates remain roughly constant over long evolutionary times, modulated by genome-wide, lineage-specific effects. Among the insects analysed so far, it appears that the Tribolium genes show the lowest rates of divergence. This has the practical consequence that homology searches for human genes yield significantly better matches in Tribolium than in Drosophila. We therefore suggest that Tribolium is better suited for comparisons between phyla than the widely employed dipterans. More... »

PAGES

7

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2148-6-7

DOI

http://dx.doi.org/10.1186/1471-2148-6-7

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1037180940

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/16436210


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