OntoDas – a tool for facilitating the construction of complex queries to the Gene Ontology View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2008-10-16

AUTHORS

Kieran O'Neill, Alexander Garcia, Anita Schwegmann, Rafael C Jimenez, Dan Jacobson, Henning Hermjakob

ABSTRACT

BackgroundOntologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do this are too technical. Within the biological domain there is an increasing need for software that facilitates the flexible retrieval of information. OntoDas aims to fulfil this need by allowing the definition of queries by selecting valid ontology terms.ResultsOntoDas is a web-based tool that uses information visualisation techniques to provide an intuitive, interactive environment for constructing ontology-based queries against the Gene Ontology Database. Both a comprehensive use case and the interface itself were designed in a participatory manner by working with biologists to ensure that the interface matches the way biologists work. OntoDas was further tested with a separate group of biologists and refined based on their suggestions.ConclusionOntoDas provides a visual and intuitive means for constructing complex queries against the Gene Ontology. It was designed with the participation of biologists and compares favourably with similar tools. It is available at http://ontodas.nbn.ac.za More... »

PAGES

437

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2105-9-437

DOI

http://dx.doi.org/10.1186/1471-2105-9-437

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1028005737

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/18925933


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