Integrating sequence and structural biology with DAS View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2007-12

AUTHORS

Andreas Prlić, Thomas A Down, Eugene Kulesha, Robert D Finn, Andreas Kähäri, Tim JP Hubbard

ABSTRACT

BACKGROUND: The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence. RESULTS: Here we present several extensions to the current DAS 1.5 protocol. These provide new commands to share alignments, three dimensional molecular structure data, add the possibility for registration and discovery of DAS servers, and provide a convention how to provide different types of data plots. We present examples of web sites and applications that use the new extensions. We operate a public registry of DAS sources, which now includes entries for more than 250 distinct sources. CONCLUSION: Our DAS extensions are essential for the management of the growing number of services and exchange of diverse biological data sets. In addition the extensions allow new types of applications to be developed and scientific questions to be addressed. The registry of DAS sources is available at http://www.dasregistry.org. More... »

PAGES

333

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1471-2105-8-333

DOI

http://dx.doi.org/10.1186/1471-2105-8-333

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1024146930

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/17850653


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0806", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/08", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Information and Computing Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Algorithms", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromosome Mapping", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Computational Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Database Management Systems", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Databases, Genetic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Information Storage and Retrieval", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Internet", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Systems Integration", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "User-Computer Interface", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Wellcome Sanger Institute", 
          "id": "https://www.grid.ac/institutes/grid.10306.34", 
          "name": [
            "The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Prli\u0107", 
        "givenName": "Andreas", 
        "id": "sg:person.01336420364.02", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336420364.02"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wellcome / CRUK Gurdon Institute", 
          "id": "https://www.grid.ac/institutes/grid.450000.1", 
          "name": [
            "Wellcome Trust/Cancer Research UK Gurdon Institute, Cambridge University, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Down", 
        "givenName": "Thomas A", 
        "id": "sg:person.0710333715.79", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0710333715.79"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "European Bioinformatics Institute, Hinxton, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kulesha", 
        "givenName": "Eugene", 
        "id": "sg:person.01326731243.96", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01326731243.96"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wellcome Sanger Institute", 
          "id": "https://www.grid.ac/institutes/grid.10306.34", 
          "name": [
            "The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Finn", 
        "givenName": "Robert D", 
        "id": "sg:person.0577031231.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0577031231.30"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "European Bioinformatics Institute", 
          "id": "https://www.grid.ac/institutes/grid.225360.0", 
          "name": [
            "European Bioinformatics Institute, Hinxton, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "K\u00e4h\u00e4ri", 
        "givenName": "Andreas", 
        "id": "sg:person.01260616043.40", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260616043.40"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Wellcome Sanger Institute", 
          "id": "https://www.grid.ac/institutes/grid.10306.34", 
          "name": [
            "The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Hubbard", 
        "givenName": "Tim JP", 
        "id": "sg:person.01036742770.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036742770.11"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1093/nar/gkl1031", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000047019"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-7-490", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000623379", 
          "https://doi.org/10.1186/1471-2105-7-490"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-7-490", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000623379", 
          "https://doi.org/10.1186/1471-2105-7-490"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg615", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002375434"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gki491", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006988386"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl650", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007732737"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btl650", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007732737"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti1014", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008444097"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkj163", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1009875854"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/28.18.e82", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010350675"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm280", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012051641"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.403602", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012195556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti506", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012223765"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1471-2105-2-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012329848", 
          "https://doi.org/10.1186/1471-2105-2-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkj149", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013612578"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl746", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015311012"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl746", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015311012"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/29.1.82", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016608571"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkm298", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017197892"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl996", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018548414"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1006/jmbi.1993.1489", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019247667"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gki463", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019543921"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bib/3.4.331", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019711375"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/protein/11.9.739", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023568040"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg571", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023778044"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.21653", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027378814"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bti1106", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027726741"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.jsb.2007.02.004", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1031606292"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl841", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034562814"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl841", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034562814"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btg430", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037195157"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.20716", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040549128"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.20716", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040549128"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg558", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047571211"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/protein/13.11.745", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048179851"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/11890850_20", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048761452", 
          "https://doi.org/10.1007/11890850_20"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/11890850_20", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048761452", 
          "https://doi.org/10.1007/11890850_20"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkl320", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051021615"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2007-12", 
    "datePublishedReg": "2007-12-01", 
    "description": "BACKGROUND: The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence.\nRESULTS: Here we present several extensions to the current DAS 1.5 protocol. These provide new commands to share alignments, three dimensional molecular structure data, add the possibility for registration and discovery of DAS servers, and provide a convention how to provide different types of data plots. We present examples of web sites and applications that use the new extensions. We operate a public registry of DAS sources, which now includes entries for more than 250 distinct sources.\nCONCLUSION: Our DAS extensions are essential for the management of the growing number of services and exchange of diverse biological data sets. In addition the extensions allow new types of applications to be developed and scientific questions to be addressed. The registry of DAS sources is available at http://www.dasregistry.org.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/1471-2105-8-333", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.3630962", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1023786", 
        "issn": [
          "1471-2105"
        ], 
        "name": "BMC Bioinformatics", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "8"
      }
    ], 
    "name": "Integrating sequence and structural biology with DAS", 
    "pagination": "333", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "7309d818ee7eb6106c9d07a3c82907653896231a8eaa5e80b64ef03b53a9b535"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "17850653"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100965194"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/1471-2105-8-333"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1024146930"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/1471-2105-8-333", 
      "https://app.dimensions.ai/details/publication/pub.1024146930"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T22:30", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000505.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186%2F1471-2105-8-333"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1471-2105-8-333'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1471-2105-8-333'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1471-2105-8-333'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1471-2105-8-333'


 

This table displays all metadata directly associated to this object as RDF triples.

250 TRIPLES      21 PREDICATES      71 URIs      31 LITERALS      19 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/1471-2105-8-333 schema:about N231f185457634d1cb3d159746931994d
2 N3a0aadc0b1ae4018a4bf6007ac416ee8
3 N404ca7463a5d4d0280e1b108907071ea
4 N535808e474f642d68b3b4d84dac0befb
5 N78498ab8f266455793643248d3747f06
6 N9971f78cfddb4963b95c90ab74287046
7 Ncadac4d802504fb7b295cd843b75ed11
8 Ndf3758ccd8984e5f9954609488c5b920
9 Nf727d15981fe463c8ebaae61c9d9a539
10 Nfb25d5d4e8534c5a986a6d9e66a01e56
11 anzsrc-for:08
12 anzsrc-for:0806
13 schema:author Nb183f3ab34e04361bb5edb443e20ebf5
14 schema:citation sg:pub.10.1007/11890850_20
15 sg:pub.10.1186/1471-2105-2-7
16 sg:pub.10.1186/1471-2105-7-490
17 https://doi.org/10.1002/prot.20716
18 https://doi.org/10.1002/prot.21653
19 https://doi.org/10.1006/jmbi.1993.1489
20 https://doi.org/10.1016/j.jsb.2007.02.004
21 https://doi.org/10.1093/bib/3.4.331
22 https://doi.org/10.1093/bioinformatics/btg430
23 https://doi.org/10.1093/bioinformatics/bti1014
24 https://doi.org/10.1093/bioinformatics/bti1106
25 https://doi.org/10.1093/bioinformatics/bti506
26 https://doi.org/10.1093/bioinformatics/btl650
27 https://doi.org/10.1093/nar/28.18.e82
28 https://doi.org/10.1093/nar/29.1.82
29 https://doi.org/10.1093/nar/gkg558
30 https://doi.org/10.1093/nar/gkg571
31 https://doi.org/10.1093/nar/gkg615
32 https://doi.org/10.1093/nar/gki463
33 https://doi.org/10.1093/nar/gki491
34 https://doi.org/10.1093/nar/gkj149
35 https://doi.org/10.1093/nar/gkj163
36 https://doi.org/10.1093/nar/gkl1031
37 https://doi.org/10.1093/nar/gkl320
38 https://doi.org/10.1093/nar/gkl746
39 https://doi.org/10.1093/nar/gkl841
40 https://doi.org/10.1093/nar/gkl996
41 https://doi.org/10.1093/nar/gkm280
42 https://doi.org/10.1093/nar/gkm298
43 https://doi.org/10.1093/protein/11.9.739
44 https://doi.org/10.1093/protein/13.11.745
45 https://doi.org/10.1101/gr.403602
46 schema:datePublished 2007-12
47 schema:datePublishedReg 2007-12-01
48 schema:description BACKGROUND: The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence. RESULTS: Here we present several extensions to the current DAS 1.5 protocol. These provide new commands to share alignments, three dimensional molecular structure data, add the possibility for registration and discovery of DAS servers, and provide a convention how to provide different types of data plots. We present examples of web sites and applications that use the new extensions. We operate a public registry of DAS sources, which now includes entries for more than 250 distinct sources. CONCLUSION: Our DAS extensions are essential for the management of the growing number of services and exchange of diverse biological data sets. In addition the extensions allow new types of applications to be developed and scientific questions to be addressed. The registry of DAS sources is available at http://www.dasregistry.org.
49 schema:genre research_article
50 schema:inLanguage en
51 schema:isAccessibleForFree true
52 schema:isPartOf N903f363541e542e7b3c07835bbbadddb
53 Nd7947bb808554d0eacffe856856bf83b
54 sg:journal.1023786
55 schema:name Integrating sequence and structural biology with DAS
56 schema:pagination 333
57 schema:productId N562c801c1fa347d4ab880be94e75f8f4
58 N81be4c9f536c458a866b06bb370aafbf
59 N8dac7fe6f5ce4829aee2312bbf394abb
60 Naebfce0eecac490f8364e03b35b3b0e8
61 Nbb1a187164764eaca768ef3031774763
62 schema:sameAs https://app.dimensions.ai/details/publication/pub.1024146930
63 https://doi.org/10.1186/1471-2105-8-333
64 schema:sdDatePublished 2019-04-10T22:30
65 schema:sdLicense https://scigraph.springernature.com/explorer/license/
66 schema:sdPublisher Na258e8913d52411bb0eece0fafd91160
67 schema:url http://link.springer.com/10.1186%2F1471-2105-8-333
68 sgo:license sg:explorer/license/
69 sgo:sdDataset articles
70 rdf:type schema:ScholarlyArticle
71 N06702d4a34d94bfbaea5c9e8f8285b50 rdf:first sg:person.0710333715.79
72 rdf:rest N8797afe298344d5f94e963ce3951cf66
73 N231f185457634d1cb3d159746931994d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
74 schema:name Algorithms
75 rdf:type schema:DefinedTerm
76 N3a0aadc0b1ae4018a4bf6007ac416ee8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
77 schema:name Computational Biology
78 rdf:type schema:DefinedTerm
79 N404ca7463a5d4d0280e1b108907071ea schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name Sequence Analysis
81 rdf:type schema:DefinedTerm
82 N535808e474f642d68b3b4d84dac0befb schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Information Storage and Retrieval
84 rdf:type schema:DefinedTerm
85 N562c801c1fa347d4ab880be94e75f8f4 schema:name nlm_unique_id
86 schema:value 100965194
87 rdf:type schema:PropertyValue
88 N56bc037d48244a8b805b89b16c9e36ab rdf:first sg:person.01036742770.11
89 rdf:rest rdf:nil
90 N78498ab8f266455793643248d3747f06 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
91 schema:name Database Management Systems
92 rdf:type schema:DefinedTerm
93 N81be4c9f536c458a866b06bb370aafbf schema:name dimensions_id
94 schema:value pub.1024146930
95 rdf:type schema:PropertyValue
96 N8797afe298344d5f94e963ce3951cf66 rdf:first sg:person.01326731243.96
97 rdf:rest Nbe1f4d18aba94ecfb911206912098fa1
98 N8bb6d995f1c440db8dd4472ec2e83bc7 rdf:first sg:person.01260616043.40
99 rdf:rest N56bc037d48244a8b805b89b16c9e36ab
100 N8dac7fe6f5ce4829aee2312bbf394abb schema:name readcube_id
101 schema:value 7309d818ee7eb6106c9d07a3c82907653896231a8eaa5e80b64ef03b53a9b535
102 rdf:type schema:PropertyValue
103 N903f363541e542e7b3c07835bbbadddb schema:volumeNumber 8
104 rdf:type schema:PublicationVolume
105 N9971f78cfddb4963b95c90ab74287046 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
106 schema:name Chromosome Mapping
107 rdf:type schema:DefinedTerm
108 Na258e8913d52411bb0eece0fafd91160 schema:name Springer Nature - SN SciGraph project
109 rdf:type schema:Organization
110 Naebfce0eecac490f8364e03b35b3b0e8 schema:name doi
111 schema:value 10.1186/1471-2105-8-333
112 rdf:type schema:PropertyValue
113 Nb183f3ab34e04361bb5edb443e20ebf5 rdf:first sg:person.01336420364.02
114 rdf:rest N06702d4a34d94bfbaea5c9e8f8285b50
115 Nbb1a187164764eaca768ef3031774763 schema:name pubmed_id
116 schema:value 17850653
117 rdf:type schema:PropertyValue
118 Nbe1f4d18aba94ecfb911206912098fa1 rdf:first sg:person.0577031231.30
119 rdf:rest N8bb6d995f1c440db8dd4472ec2e83bc7
120 Ncadac4d802504fb7b295cd843b75ed11 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
121 schema:name Systems Integration
122 rdf:type schema:DefinedTerm
123 Nd7947bb808554d0eacffe856856bf83b schema:issueNumber 1
124 rdf:type schema:PublicationIssue
125 Ndf3758ccd8984e5f9954609488c5b920 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
126 schema:name Databases, Genetic
127 rdf:type schema:DefinedTerm
128 Nf727d15981fe463c8ebaae61c9d9a539 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
129 schema:name User-Computer Interface
130 rdf:type schema:DefinedTerm
131 Nfb25d5d4e8534c5a986a6d9e66a01e56 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Internet
133 rdf:type schema:DefinedTerm
134 anzsrc-for:08 schema:inDefinedTermSet anzsrc-for:
135 schema:name Information and Computing Sciences
136 rdf:type schema:DefinedTerm
137 anzsrc-for:0806 schema:inDefinedTermSet anzsrc-for:
138 schema:name Information Systems
139 rdf:type schema:DefinedTerm
140 sg:grant.3630962 http://pending.schema.org/fundedItem sg:pub.10.1186/1471-2105-8-333
141 rdf:type schema:MonetaryGrant
142 sg:journal.1023786 schema:issn 1471-2105
143 schema:name BMC Bioinformatics
144 rdf:type schema:Periodical
145 sg:person.01036742770.11 schema:affiliation https://www.grid.ac/institutes/grid.10306.34
146 schema:familyName Hubbard
147 schema:givenName Tim JP
148 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036742770.11
149 rdf:type schema:Person
150 sg:person.01260616043.40 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
151 schema:familyName Kähäri
152 schema:givenName Andreas
153 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260616043.40
154 rdf:type schema:Person
155 sg:person.01326731243.96 schema:affiliation https://www.grid.ac/institutes/grid.225360.0
156 schema:familyName Kulesha
157 schema:givenName Eugene
158 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01326731243.96
159 rdf:type schema:Person
160 sg:person.01336420364.02 schema:affiliation https://www.grid.ac/institutes/grid.10306.34
161 schema:familyName Prlić
162 schema:givenName Andreas
163 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01336420364.02
164 rdf:type schema:Person
165 sg:person.0577031231.30 schema:affiliation https://www.grid.ac/institutes/grid.10306.34
166 schema:familyName Finn
167 schema:givenName Robert D
168 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0577031231.30
169 rdf:type schema:Person
170 sg:person.0710333715.79 schema:affiliation https://www.grid.ac/institutes/grid.450000.1
171 schema:familyName Down
172 schema:givenName Thomas A
173 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0710333715.79
174 rdf:type schema:Person
175 sg:pub.10.1007/11890850_20 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048761452
176 https://doi.org/10.1007/11890850_20
177 rdf:type schema:CreativeWork
178 sg:pub.10.1186/1471-2105-2-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012329848
179 https://doi.org/10.1186/1471-2105-2-7
180 rdf:type schema:CreativeWork
181 sg:pub.10.1186/1471-2105-7-490 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000623379
182 https://doi.org/10.1186/1471-2105-7-490
183 rdf:type schema:CreativeWork
184 https://doi.org/10.1002/prot.20716 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040549128
185 rdf:type schema:CreativeWork
186 https://doi.org/10.1002/prot.21653 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027378814
187 rdf:type schema:CreativeWork
188 https://doi.org/10.1006/jmbi.1993.1489 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019247667
189 rdf:type schema:CreativeWork
190 https://doi.org/10.1016/j.jsb.2007.02.004 schema:sameAs https://app.dimensions.ai/details/publication/pub.1031606292
191 rdf:type schema:CreativeWork
192 https://doi.org/10.1093/bib/3.4.331 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019711375
193 rdf:type schema:CreativeWork
194 https://doi.org/10.1093/bioinformatics/btg430 schema:sameAs https://app.dimensions.ai/details/publication/pub.1037195157
195 rdf:type schema:CreativeWork
196 https://doi.org/10.1093/bioinformatics/bti1014 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008444097
197 rdf:type schema:CreativeWork
198 https://doi.org/10.1093/bioinformatics/bti1106 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027726741
199 rdf:type schema:CreativeWork
200 https://doi.org/10.1093/bioinformatics/bti506 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012223765
201 rdf:type schema:CreativeWork
202 https://doi.org/10.1093/bioinformatics/btl650 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007732737
203 rdf:type schema:CreativeWork
204 https://doi.org/10.1093/nar/28.18.e82 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010350675
205 rdf:type schema:CreativeWork
206 https://doi.org/10.1093/nar/29.1.82 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016608571
207 rdf:type schema:CreativeWork
208 https://doi.org/10.1093/nar/gkg558 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047571211
209 rdf:type schema:CreativeWork
210 https://doi.org/10.1093/nar/gkg571 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023778044
211 rdf:type schema:CreativeWork
212 https://doi.org/10.1093/nar/gkg615 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002375434
213 rdf:type schema:CreativeWork
214 https://doi.org/10.1093/nar/gki463 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019543921
215 rdf:type schema:CreativeWork
216 https://doi.org/10.1093/nar/gki491 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006988386
217 rdf:type schema:CreativeWork
218 https://doi.org/10.1093/nar/gkj149 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013612578
219 rdf:type schema:CreativeWork
220 https://doi.org/10.1093/nar/gkj163 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009875854
221 rdf:type schema:CreativeWork
222 https://doi.org/10.1093/nar/gkl1031 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000047019
223 rdf:type schema:CreativeWork
224 https://doi.org/10.1093/nar/gkl320 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051021615
225 rdf:type schema:CreativeWork
226 https://doi.org/10.1093/nar/gkl746 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015311012
227 rdf:type schema:CreativeWork
228 https://doi.org/10.1093/nar/gkl841 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034562814
229 rdf:type schema:CreativeWork
230 https://doi.org/10.1093/nar/gkl996 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018548414
231 rdf:type schema:CreativeWork
232 https://doi.org/10.1093/nar/gkm280 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012051641
233 rdf:type schema:CreativeWork
234 https://doi.org/10.1093/nar/gkm298 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017197892
235 rdf:type schema:CreativeWork
236 https://doi.org/10.1093/protein/11.9.739 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023568040
237 rdf:type schema:CreativeWork
238 https://doi.org/10.1093/protein/13.11.745 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048179851
239 rdf:type schema:CreativeWork
240 https://doi.org/10.1101/gr.403602 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012195556
241 rdf:type schema:CreativeWork
242 https://www.grid.ac/institutes/grid.10306.34 schema:alternateName Wellcome Sanger Institute
243 schema:name The Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
244 rdf:type schema:Organization
245 https://www.grid.ac/institutes/grid.225360.0 schema:alternateName European Bioinformatics Institute
246 schema:name European Bioinformatics Institute, Hinxton, Cambridge, UK
247 rdf:type schema:Organization
248 https://www.grid.ac/institutes/grid.450000.1 schema:alternateName Wellcome / CRUK Gurdon Institute
249 schema:name Wellcome Trust/Cancer Research UK Gurdon Institute, Cambridge University, Cambridge, UK
250 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...