A common reference population from four European Holstein populations increases reliability of genomic predictions View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2011-12

AUTHORS

Mogens S Lund, Adrianus PW de Roos, Alfred G de Vries, Tom Druet, Vincent Ducrocq, Sébastien Fritz, François Guillaume, Bernt Guldbrandtsen, Zenting Liu, Reinhard Reents, Chris Schrooten, Franz Seefried, Guosheng Su

ABSTRACT

BACKGROUND: Size of the reference population and reliability of phenotypes are crucial factors influencing the reliability of genomic predictions. It is therefore useful to combine closely related populations. Increased accuracies of genomic predictions depend on the number of individuals added to the reference population, the reliability of their phenotypes, and the relatedness of the populations that are combined. METHODS: This paper assesses the increase in reliability achieved when combining four Holstein reference populations of 4000 bulls each, from European breeding organizations, i.e. UNCEIA (France), VikingGenetics (Denmark, Sweden, Finland), DHV-VIT (Germany) and CRV (The Netherlands, Flanders). Each partner validated its own bulls using their national reference data and the combined data, respectively. RESULTS: Combining the data significantly increased the reliability of genomic predictions for bulls in all four populations. Reliabilities increased by 10%, compared to reliabilities obtained with national reference populations alone, when they were averaged over countries and the traits evaluated. For different traits and countries, the increase in reliability ranged from 2% to 19%. CONCLUSIONS: Genomic selection programs benefit greatly from combining data from several closely related populations into a single large reference population. More... »

PAGES

43

Identifiers

URI

http://scigraph.springernature.com/pub.10.1186/1297-9686-43-43

DOI

http://dx.doi.org/10.1186/1297-9686-43-43

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1030941918

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/22152008


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Animals", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Breeding", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cattle", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Europe", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Female", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genetic Variation", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Male", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Models, Genetic", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phenotype", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Single Nucleotide", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Quantitative Trait Loci", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Reference Values", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Selection, Genetic", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Aarhus University", 
          "id": "https://www.grid.ac/institutes/grid.7048.b", 
          "name": [
            "Faculty of Science and Technology, Department of Molecular Biology and Genetics, AU-Foulum, Aarhus University, PO Box 50, DK-8830, Tjele, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Lund", 
        "givenName": "Mogens S", 
        "id": "sg:person.0740177106.57", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740177106.57"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Roos", 
        "givenName": "Adrianus PW", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Vries", 
        "givenName": "Alfred G", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Li\u00e8ge", 
          "id": "https://www.grid.ac/institutes/grid.4861.b", 
          "name": [
            "Unit of Animal Genomics, Faculty of Veterinary Medicine and Centre for Biomedical Integrative Genoproteomics, University of Li\u00e8ge, B-4000, Li\u00e8ge, Belgium"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Druet", 
        "givenName": "Tom", 
        "id": "sg:person.01133025201.08", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133025201.08"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Centre de Recherches de Jouy-en-Josas", 
          "id": "https://www.grid.ac/institutes/grid.417961.c", 
          "name": [
            "INRA, UMR1313 G\u00e9n\u00e9tique Animale et Biologie Int\u00e9grative, F-78352, Jouy-en-Josas, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ducrocq", 
        "givenName": "Vincent", 
        "id": "sg:person.0773147700.89", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0773147700.89"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "UNCEIA, 149 rue de Bercy, F-75595, Paris, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fritz", 
        "givenName": "S\u00e9bastien", 
        "id": "sg:person.01201140401.34", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201140401.34"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institut de l\u2019Elevage", 
          "id": "https://www.grid.ac/institutes/grid.425193.8", 
          "name": [
            "INRA, UMR1313 G\u00e9n\u00e9tique Animale et Biologie Int\u00e9grative, F-78352, Jouy-en-Josas, France", 
            "Institut de l'Elevage, 149 rue de Bercy, F-75595, Paris, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Guillaume", 
        "givenName": "Fran\u00e7ois", 
        "id": "sg:person.01217763600.13", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01217763600.13"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Aarhus University", 
          "id": "https://www.grid.ac/institutes/grid.7048.b", 
          "name": [
            "Faculty of Science and Technology, Department of Molecular Biology and Genetics, AU-Foulum, Aarhus University, PO Box 50, DK-8830, Tjele, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Guldbrandtsen", 
        "givenName": "Bernt", 
        "id": "sg:person.0655324301.37", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0655324301.37"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "VIT, Heideweg 1, 27283, Verden, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Liu", 
        "givenName": "Zenting", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "VIT, Heideweg 1, 27283, Verden, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Reents", 
        "givenName": "Reinhard", 
        "id": "sg:person.01351143507.11", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351143507.11"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Schrooten", 
        "givenName": "Chris", 
        "id": "sg:person.01341211052.43", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341211052.43"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "VIT, Heideweg 1, 27283, Verden, Germany"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Seefried", 
        "givenName": "Franz", 
        "id": "sg:person.01357272474.87", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357272474.87"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Aarhus University", 
          "id": "https://www.grid.ac/institutes/grid.7048.b", 
          "name": [
            "Faculty of Science and Technology, Department of Molecular Biology and Genetics, AU-Foulum, Aarhus University, PO Box 50, DK-8830, Tjele, Denmark"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Su", 
        "givenName": "Guosheng", 
        "id": "sg:person.01262045357.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262045357.16"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1111/j.1439-0388.2010.00878.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001783344"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1439-0388.2010.00878.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001783344"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10709-008-9308-0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011541525", 
          "https://doi.org/10.1007/s10709-008-9308-0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.107.080838", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013474001"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.107.080838", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013474001"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1753-6561-3-s1-s1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020111780", 
          "https://doi.org/10.1186/1753-6561-3-s1-s1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0005350", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020552743"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.107.085035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021046100"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.107.085035", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021046100"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.2008-1514", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028885396"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.2008-1646", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029683381"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.2009-2192", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1043172547"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0301-6226(00)00255-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047550447"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrg2575", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051461847", 
          "https://doi.org/10.1038/nrg2575"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nrg2575", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051461847", 
          "https://doi.org/10.1038/nrg2575"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1086/521987", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052475645"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.109.108431", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053725097"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1534/genetics.109.108431", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053725097"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074795580", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.s0022-0302(01)74611-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1074853793"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.2007-0980", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1077799697"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.2008-1762", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1077900359"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.s0022-0302(94)77209-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1082520070"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3168/jds.s0022-0302(98)75607-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1083239273"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2011-12", 
    "datePublishedReg": "2011-12-01", 
    "description": "BACKGROUND: Size of the reference population and reliability of phenotypes are crucial factors influencing the reliability of genomic predictions. It is therefore useful to combine closely related populations. Increased accuracies of genomic predictions depend on the number of individuals added to the reference population, the reliability of their phenotypes, and the relatedness of the populations that are combined.\nMETHODS: This paper assesses the increase in reliability achieved when combining four Holstein reference populations of 4000 bulls each, from European breeding organizations, i.e. UNCEIA (France), VikingGenetics (Denmark, Sweden, Finland), DHV-VIT (Germany) and CRV (The Netherlands, Flanders). Each partner validated its own bulls using their national reference data and the combined data, respectively.\nRESULTS: Combining the data significantly increased the reliability of genomic predictions for bulls in all four populations. Reliabilities increased by 10%, compared to reliabilities obtained with national reference populations alone, when they were averaged over countries and the traits evaluated. For different traits and countries, the increase in reliability ranged from 2% to 19%.\nCONCLUSIONS: Genomic selection programs benefit greatly from combining data from several closely related populations into a single large reference population.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1186/1297-9686-43-43", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": true, 
    "isPartOf": [
      {
        "id": "sg:journal.1014139", 
        "issn": [
          "0999-193X", 
          "1297-9686"
        ], 
        "name": "Genetics Selection Evolution", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "43"
      }
    ], 
    "name": "A common reference population from four European Holstein populations increases reliability of genomic predictions", 
    "pagination": "43", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "936771d3ce3492bf256fad457489daa90cd9bda3b38a7f6f103c642c9a61c919"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "22152008"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9114088"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1186/1297-9686-43-43"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1030941918"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1186/1297-9686-43-43", 
      "https://app.dimensions.ai/details/publication/pub.1030941918"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-10T14:06", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8660_00000500.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1186/1297-9686-43-43"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1186/1297-9686-43-43'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1186/1297-9686-43-43'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1186/1297-9686-43-43'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1186/1297-9686-43-43'


 

This table displays all metadata directly associated to this object as RDF triples.

285 TRIPLES      21 PREDICATES      61 URIs      34 LITERALS      22 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1186/1297-9686-43-43 schema:about N2f44f4df67914b05a70f248a1b99484a
2 N4231987faf934a888594b5fea0e9e017
3 N42434a0d76474944930014400c862a67
4 N4691558c0a8249fa86959e4725fdc40b
5 N4bfc3689d3484f70aad069f110fc5da5
6 N6328e1629c3d4465abb9c106cd86dda3
7 N81089e915a414b398db5aa7bd56e0861
8 N95e5d3f5cda74bb9b7c9450d854a56b7
9 N9e93f0d39da04d01adfe137ce29339f9
10 N9eea16c2bc974b8eaba19a55dd46d8b5
11 Na36c9efac28241298fadb7271e18a0be
12 Nc691f735feea4cb788cd7c7f4f17ceb1
13 Ne05a40066fc64ab78f65d0262b1d68bd
14 anzsrc-for:06
15 anzsrc-for:0604
16 schema:author N067140934d994a748b5954acb751981b
17 schema:citation sg:pub.10.1007/s10709-008-9308-0
18 sg:pub.10.1038/nrg2575
19 sg:pub.10.1186/1753-6561-3-s1-s1
20 https://app.dimensions.ai/details/publication/pub.1074795580
21 https://doi.org/10.1016/s0301-6226(00)00255-4
22 https://doi.org/10.1086/521987
23 https://doi.org/10.1111/j.1439-0388.2010.00878.x
24 https://doi.org/10.1371/journal.pone.0005350
25 https://doi.org/10.1534/genetics.107.080838
26 https://doi.org/10.1534/genetics.107.085035
27 https://doi.org/10.1534/genetics.109.108431
28 https://doi.org/10.3168/jds.2007-0980
29 https://doi.org/10.3168/jds.2008-1514
30 https://doi.org/10.3168/jds.2008-1646
31 https://doi.org/10.3168/jds.2008-1762
32 https://doi.org/10.3168/jds.2009-2192
33 https://doi.org/10.3168/jds.s0022-0302(01)74611-5
34 https://doi.org/10.3168/jds.s0022-0302(94)77209-x
35 https://doi.org/10.3168/jds.s0022-0302(98)75607-3
36 schema:datePublished 2011-12
37 schema:datePublishedReg 2011-12-01
38 schema:description BACKGROUND: Size of the reference population and reliability of phenotypes are crucial factors influencing the reliability of genomic predictions. It is therefore useful to combine closely related populations. Increased accuracies of genomic predictions depend on the number of individuals added to the reference population, the reliability of their phenotypes, and the relatedness of the populations that are combined. METHODS: This paper assesses the increase in reliability achieved when combining four Holstein reference populations of 4000 bulls each, from European breeding organizations, i.e. UNCEIA (France), VikingGenetics (Denmark, Sweden, Finland), DHV-VIT (Germany) and CRV (The Netherlands, Flanders). Each partner validated its own bulls using their national reference data and the combined data, respectively. RESULTS: Combining the data significantly increased the reliability of genomic predictions for bulls in all four populations. Reliabilities increased by 10%, compared to reliabilities obtained with national reference populations alone, when they were averaged over countries and the traits evaluated. For different traits and countries, the increase in reliability ranged from 2% to 19%. CONCLUSIONS: Genomic selection programs benefit greatly from combining data from several closely related populations into a single large reference population.
39 schema:genre research_article
40 schema:inLanguage en
41 schema:isAccessibleForFree true
42 schema:isPartOf N33eab52144c74260aec1b271956ae861
43 N4785c973bd1d41cd94ccb1bd8e768705
44 sg:journal.1014139
45 schema:name A common reference population from four European Holstein populations increases reliability of genomic predictions
46 schema:pagination 43
47 schema:productId N32468b78366e487dbf1f38c708254a22
48 N4b011615d0ef4db7894a2cb5235cc6a3
49 N558438e623b04f0fbd03fa9ecec55d0a
50 Nacad366b34fd4633bc769e9691c9f498
51 Nfeadeb6461564445b3e61eaf2f375bbd
52 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030941918
53 https://doi.org/10.1186/1297-9686-43-43
54 schema:sdDatePublished 2019-04-10T14:06
55 schema:sdLicense https://scigraph.springernature.com/explorer/license/
56 schema:sdPublisher N65624cd4f7f6471f83c9dd0726dd66f9
57 schema:url http://link.springer.com/10.1186/1297-9686-43-43
58 sgo:license sg:explorer/license/
59 sgo:sdDataset articles
60 rdf:type schema:ScholarlyArticle
61 N067140934d994a748b5954acb751981b rdf:first sg:person.0740177106.57
62 rdf:rest N20a4cfb8ad67421dbc39f637aad85298
63 N106c62a15aef49adb8eb696adfcd0914 rdf:first sg:person.01262045357.16
64 rdf:rest rdf:nil
65 N20a4cfb8ad67421dbc39f637aad85298 rdf:first N7c1d11f82ba945f199e10298e9505a88
66 rdf:rest N6008d0afcc9242ad8a102efebbe96316
67 N2f44f4df67914b05a70f248a1b99484a schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
68 schema:name Male
69 rdf:type schema:DefinedTerm
70 N3100dec7b5524e97ad025e3ae5c39d5a schema:name CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands
71 rdf:type schema:Organization
72 N32468b78366e487dbf1f38c708254a22 schema:name readcube_id
73 schema:value 936771d3ce3492bf256fad457489daa90cd9bda3b38a7f6f103c642c9a61c919
74 rdf:type schema:PropertyValue
75 N33eab52144c74260aec1b271956ae861 schema:volumeNumber 43
76 rdf:type schema:PublicationVolume
77 N39e1bc3d04a14a7489813cb2de17de24 schema:name VIT, Heideweg 1, 27283, Verden, Germany
78 rdf:type schema:Organization
79 N4231987faf934a888594b5fea0e9e017 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
80 schema:name Genetic Variation
81 rdf:type schema:DefinedTerm
82 N42434a0d76474944930014400c862a67 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
83 schema:name Europe
84 rdf:type schema:DefinedTerm
85 N4691558c0a8249fa86959e4725fdc40b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
86 schema:name Phenotype
87 rdf:type schema:DefinedTerm
88 N4785c973bd1d41cd94ccb1bd8e768705 schema:issueNumber 1
89 rdf:type schema:PublicationIssue
90 N4b011615d0ef4db7894a2cb5235cc6a3 schema:name dimensions_id
91 schema:value pub.1030941918
92 rdf:type schema:PropertyValue
93 N4bfc3689d3484f70aad069f110fc5da5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
94 schema:name Polymorphism, Single Nucleotide
95 rdf:type schema:DefinedTerm
96 N558438e623b04f0fbd03fa9ecec55d0a schema:name doi
97 schema:value 10.1186/1297-9686-43-43
98 rdf:type schema:PropertyValue
99 N59d43fc2e19c45a8ac943ce5e55600f6 rdf:first sg:person.0655324301.37
100 rdf:rest Na26fad5b40dc499fb7cd5382ab2ad1e0
101 N5ecdfc28e5564e36bbf81895693e816f rdf:first sg:person.01357272474.87
102 rdf:rest N106c62a15aef49adb8eb696adfcd0914
103 N6008d0afcc9242ad8a102efebbe96316 rdf:first N9662b1fc886a46228859eece57b167db
104 rdf:rest Ncd127d46761f425082aa602df23c0da0
105 N6328e1629c3d4465abb9c106cd86dda3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
106 schema:name Models, Genetic
107 rdf:type schema:DefinedTerm
108 N63bc95423aba45d894dda9589e72dfe8 schema:name UNCEIA, 149 rue de Bercy, F-75595, Paris, France
109 rdf:type schema:Organization
110 N65624cd4f7f6471f83c9dd0726dd66f9 schema:name Springer Nature - SN SciGraph project
111 rdf:type schema:Organization
112 N752ee51f8cdf47c0a7828c7cf23efbdd rdf:first sg:person.01341211052.43
113 rdf:rest N5ecdfc28e5564e36bbf81895693e816f
114 N7c1d11f82ba945f199e10298e9505a88 schema:affiliation Nc1700a64c4d04529accb924f9ba9f801
115 schema:familyName de Roos
116 schema:givenName Adrianus PW
117 rdf:type schema:Person
118 N81089e915a414b398db5aa7bd56e0861 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
119 schema:name Reference Values
120 rdf:type schema:DefinedTerm
121 N83cd2c8a03d14944a967c8243a7c4d6a rdf:first sg:person.01217763600.13
122 rdf:rest N59d43fc2e19c45a8ac943ce5e55600f6
123 N95e5d3f5cda74bb9b7c9450d854a56b7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Female
125 rdf:type schema:DefinedTerm
126 N9662b1fc886a46228859eece57b167db schema:affiliation N3100dec7b5524e97ad025e3ae5c39d5a
127 schema:familyName de Vries
128 schema:givenName Alfred G
129 rdf:type schema:Person
130 N9e93f0d39da04d01adfe137ce29339f9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
131 schema:name Animals
132 rdf:type schema:DefinedTerm
133 N9eea16c2bc974b8eaba19a55dd46d8b5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
134 schema:name Breeding
135 rdf:type schema:DefinedTerm
136 Na26fad5b40dc499fb7cd5382ab2ad1e0 rdf:first Nd9f42519b0b845e598c927e670f3826f
137 rdf:rest Nb9ec1974004a417db58f8ee3af7b2f73
138 Na36c9efac28241298fadb7271e18a0be schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
139 schema:name Selection, Genetic
140 rdf:type schema:DefinedTerm
141 Nac61356caf2c4860a75685c92b036366 rdf:first sg:person.0773147700.89
142 rdf:rest Ne24563fb98094200b8c190f039ff0126
143 Nacad366b34fd4633bc769e9691c9f498 schema:name nlm_unique_id
144 schema:value 9114088
145 rdf:type schema:PropertyValue
146 Nb1e2026e4efa44a59c72a7e074d5ce68 schema:name CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands
147 rdf:type schema:Organization
148 Nb9ec1974004a417db58f8ee3af7b2f73 rdf:first sg:person.01351143507.11
149 rdf:rest N752ee51f8cdf47c0a7828c7cf23efbdd
150 Nc1700a64c4d04529accb924f9ba9f801 schema:name CRV, P.O. Box 454, 6800 AL, Arnhem, the Netherlands
151 rdf:type schema:Organization
152 Nc691f735feea4cb788cd7c7f4f17ceb1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
153 schema:name Cattle
154 rdf:type schema:DefinedTerm
155 Ncd127d46761f425082aa602df23c0da0 rdf:first sg:person.01133025201.08
156 rdf:rest Nac61356caf2c4860a75685c92b036366
157 Nd9f42519b0b845e598c927e670f3826f schema:affiliation N39e1bc3d04a14a7489813cb2de17de24
158 schema:familyName Liu
159 schema:givenName Zenting
160 rdf:type schema:Person
161 Ne05a40066fc64ab78f65d0262b1d68bd schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
162 schema:name Quantitative Trait Loci
163 rdf:type schema:DefinedTerm
164 Ne24563fb98094200b8c190f039ff0126 rdf:first sg:person.01201140401.34
165 rdf:rest N83cd2c8a03d14944a967c8243a7c4d6a
166 Ne39762b77a054ee3bf4b63b6584933d9 schema:name VIT, Heideweg 1, 27283, Verden, Germany
167 rdf:type schema:Organization
168 Nf5afc2ddcb3645e184a91164efda4626 schema:name VIT, Heideweg 1, 27283, Verden, Germany
169 rdf:type schema:Organization
170 Nfeadeb6461564445b3e61eaf2f375bbd schema:name pubmed_id
171 schema:value 22152008
172 rdf:type schema:PropertyValue
173 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
174 schema:name Biological Sciences
175 rdf:type schema:DefinedTerm
176 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
177 schema:name Genetics
178 rdf:type schema:DefinedTerm
179 sg:journal.1014139 schema:issn 0999-193X
180 1297-9686
181 schema:name Genetics Selection Evolution
182 rdf:type schema:Periodical
183 sg:person.01133025201.08 schema:affiliation https://www.grid.ac/institutes/grid.4861.b
184 schema:familyName Druet
185 schema:givenName Tom
186 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133025201.08
187 rdf:type schema:Person
188 sg:person.01201140401.34 schema:affiliation N63bc95423aba45d894dda9589e72dfe8
189 schema:familyName Fritz
190 schema:givenName Sébastien
191 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01201140401.34
192 rdf:type schema:Person
193 sg:person.01217763600.13 schema:affiliation https://www.grid.ac/institutes/grid.425193.8
194 schema:familyName Guillaume
195 schema:givenName François
196 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01217763600.13
197 rdf:type schema:Person
198 sg:person.01262045357.16 schema:affiliation https://www.grid.ac/institutes/grid.7048.b
199 schema:familyName Su
200 schema:givenName Guosheng
201 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01262045357.16
202 rdf:type schema:Person
203 sg:person.01341211052.43 schema:affiliation Nb1e2026e4efa44a59c72a7e074d5ce68
204 schema:familyName Schrooten
205 schema:givenName Chris
206 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341211052.43
207 rdf:type schema:Person
208 sg:person.01351143507.11 schema:affiliation Ne39762b77a054ee3bf4b63b6584933d9
209 schema:familyName Reents
210 schema:givenName Reinhard
211 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01351143507.11
212 rdf:type schema:Person
213 sg:person.01357272474.87 schema:affiliation Nf5afc2ddcb3645e184a91164efda4626
214 schema:familyName Seefried
215 schema:givenName Franz
216 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01357272474.87
217 rdf:type schema:Person
218 sg:person.0655324301.37 schema:affiliation https://www.grid.ac/institutes/grid.7048.b
219 schema:familyName Guldbrandtsen
220 schema:givenName Bernt
221 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0655324301.37
222 rdf:type schema:Person
223 sg:person.0740177106.57 schema:affiliation https://www.grid.ac/institutes/grid.7048.b
224 schema:familyName Lund
225 schema:givenName Mogens S
226 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740177106.57
227 rdf:type schema:Person
228 sg:person.0773147700.89 schema:affiliation https://www.grid.ac/institutes/grid.417961.c
229 schema:familyName Ducrocq
230 schema:givenName Vincent
231 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0773147700.89
232 rdf:type schema:Person
233 sg:pub.10.1007/s10709-008-9308-0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011541525
234 https://doi.org/10.1007/s10709-008-9308-0
235 rdf:type schema:CreativeWork
236 sg:pub.10.1038/nrg2575 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051461847
237 https://doi.org/10.1038/nrg2575
238 rdf:type schema:CreativeWork
239 sg:pub.10.1186/1753-6561-3-s1-s1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020111780
240 https://doi.org/10.1186/1753-6561-3-s1-s1
241 rdf:type schema:CreativeWork
242 https://app.dimensions.ai/details/publication/pub.1074795580 schema:CreativeWork
243 https://doi.org/10.1016/s0301-6226(00)00255-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047550447
244 rdf:type schema:CreativeWork
245 https://doi.org/10.1086/521987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052475645
246 rdf:type schema:CreativeWork
247 https://doi.org/10.1111/j.1439-0388.2010.00878.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1001783344
248 rdf:type schema:CreativeWork
249 https://doi.org/10.1371/journal.pone.0005350 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020552743
250 rdf:type schema:CreativeWork
251 https://doi.org/10.1534/genetics.107.080838 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013474001
252 rdf:type schema:CreativeWork
253 https://doi.org/10.1534/genetics.107.085035 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021046100
254 rdf:type schema:CreativeWork
255 https://doi.org/10.1534/genetics.109.108431 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053725097
256 rdf:type schema:CreativeWork
257 https://doi.org/10.3168/jds.2007-0980 schema:sameAs https://app.dimensions.ai/details/publication/pub.1077799697
258 rdf:type schema:CreativeWork
259 https://doi.org/10.3168/jds.2008-1514 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028885396
260 rdf:type schema:CreativeWork
261 https://doi.org/10.3168/jds.2008-1646 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029683381
262 rdf:type schema:CreativeWork
263 https://doi.org/10.3168/jds.2008-1762 schema:sameAs https://app.dimensions.ai/details/publication/pub.1077900359
264 rdf:type schema:CreativeWork
265 https://doi.org/10.3168/jds.2009-2192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043172547
266 rdf:type schema:CreativeWork
267 https://doi.org/10.3168/jds.s0022-0302(01)74611-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1074853793
268 rdf:type schema:CreativeWork
269 https://doi.org/10.3168/jds.s0022-0302(94)77209-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1082520070
270 rdf:type schema:CreativeWork
271 https://doi.org/10.3168/jds.s0022-0302(98)75607-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1083239273
272 rdf:type schema:CreativeWork
273 https://www.grid.ac/institutes/grid.417961.c schema:alternateName Centre de Recherches de Jouy-en-Josas
274 schema:name INRA, UMR1313 Génétique Animale et Biologie Intégrative, F-78352, Jouy-en-Josas, France
275 rdf:type schema:Organization
276 https://www.grid.ac/institutes/grid.425193.8 schema:alternateName Institut de l’Elevage
277 schema:name INRA, UMR1313 Génétique Animale et Biologie Intégrative, F-78352, Jouy-en-Josas, France
278 Institut de l'Elevage, 149 rue de Bercy, F-75595, Paris, France
279 rdf:type schema:Organization
280 https://www.grid.ac/institutes/grid.4861.b schema:alternateName University of Liège
281 schema:name Unit of Animal Genomics, Faculty of Veterinary Medicine and Centre for Biomedical Integrative Genoproteomics, University of Liège, B-4000, Liège, Belgium
282 rdf:type schema:Organization
283 https://www.grid.ac/institutes/grid.7048.b schema:alternateName Aarhus University
284 schema:name Faculty of Science and Technology, Department of Molecular Biology and Genetics, AU-Foulum, Aarhus University, PO Box 50, DK-8830, Tjele, Denmark
285 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...