Translocation of polyampholytes and intrinsically disordered proteins⋆ View Full Text


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Article Info

DATE

2018-06

AUTHORS

A. Johner, J. F. Joanny

ABSTRACT

Polyampholytes are polymers carrying electrical charges of both signs along their backbone. We consider synthetic polyampholytes with a quenched random charge sequence and intrinsically disordered proteins, which have a well-defined charge sequence and behave like polyampholytes in the denaturated state. We study their translocation driven by an electric field through a pore. The role of disorder along the charge sequence of synthetic polyampholytes is analyzed. We show how disorder slows down the translocation dynamics. For intrinsically disordered proteins, the translocation vs. rejection rates by the pore depends on which end is engaged in the translocation channel. We discuss the rejection time, the blockade time distributions and the translocation speed for the charge sequence of two specific intrinsically disordered proteins differing in length and structure. More... »

PAGES

78

References to SciGraph publications

  • 1989-02. Behavior of general one-dimensional diffusion processes in JOURNAL OF STATISTICAL PHYSICS
  • 2003-04. Charge relaxation in polyampholytes of various statistics in THE EUROPEAN PHYSICAL JOURNAL E
  • 1983-06. Velocity and diffusion constant of a periodic one-dimensional hopping model in JOURNAL OF STATISTICAL PHYSICS
  • 2016-12. The concept of entropic rectifier facing experiments in SCIENTIFIC REPORTS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1140/epje/i2018-11686-7

    DOI

    http://dx.doi.org/10.1140/epje/i2018-11686-7

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1105011143

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/29926202


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