Ontology type: schema:ScholarlyArticle
2018-01
AUTHORST. N. Melnik, G. S. Nagibina, A. K. Surin, K. A. Glukhova, B. S. Melnik
ABSTRACTStudying the effect of cysteine bridges on different energy levels of multistage folding proteins will enable a better understanding of the process of folding and functioning of globular proteins. In particular, it will create prospects for directed change in the stability and rate of protein folding. In this work, using the method of differential scanning microcalorimetry, we have studied the effect of three cysteine bridges introduced in different structural elements of the green fluorescent protein on the denaturation enthalpies, activation energies, and heat-capacity increments when this protein passes from native to intermediate and transition states. The studies have allowed us to confirm that, with this protein denaturation, the process hardly damages the structure initially, but then changes occur in the protein structure in the region of 4–6 beta sheets. The cysteine bridge introduced in this region decreases the hydration of the second transition state and increases the hydration of the second intermediate state during the thermal denaturation of the green fluorescent protein. More... »
PAGES75-83
http://scigraph.springernature.com/pub.10.1134/s0026893318010120
DOIhttp://dx.doi.org/10.1134/s0026893318010120
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1101321604
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biochemistry and Cell Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 142290, Pushchino, Moscow oblast, Russia"
],
"type": "Organization"
},
"familyName": "Melnik",
"givenName": "T. N.",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 142290, Pushchino, Moscow oblast, Russia"
],
"type": "Organization"
},
"familyName": "Nagibina",
"givenName": "G. S.",
"id": "sg:person.01304237321.69",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01304237321.69"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 142290, Pushchino, Moscow oblast, Russia"
],
"type": "Organization"
},
"familyName": "Surin",
"givenName": "A. K.",
"id": "sg:person.015557024333.30",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015557024333.30"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 142290, Pushchino, Moscow oblast, Russia"
],
"type": "Organization"
},
"familyName": "Glukhova",
"givenName": "K. A.",
"id": "sg:person.014372076765.92",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014372076765.92"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Institute of Protein Research",
"id": "https://www.grid.ac/institutes/grid.418952.3",
"name": [
"Institute of Protein Research, Russian Academy of Sciences, 142290, Pushchino, Moscow oblast, Russia"
],
"type": "Organization"
},
"familyName": "Melnik",
"givenName": "B. S.",
"id": "sg:person.01142642332.28",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142642332.28"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1073/pnas.86.17.6562",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000581220"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.91.22.10422",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001489000"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0076-6879(86)31033-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003760147"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1080/07391102.2012.10507414",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003988491"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1110/ps.9.12.2394",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005283971"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2007.05.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007861142"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m509281200",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008543167"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0065-3233(08)60460-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010402812"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0098645",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011570637"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0022-2836(92)90094-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011891392"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbrc.2009.10.109",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014218066"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0048604",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017910361"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1529/biophysj.106.103804",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020448887"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2091-7-12",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021410906",
"https://doi.org/10.1186/1471-2091-7-12"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1002/pro.5560021002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024727221"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja803782x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026524977"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/ja803782x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026524977"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0022-2836(74)90188-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027426104"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.96.20.11299",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028605522"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi048725t",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032083849"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi048725t",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032083849"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.febslet.2013.11.024",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034711339"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0301-4622(98)00149-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035638430"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tca.2010.09.002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040541766"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2006.07.009",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040760117"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbapap.2011.07.017",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040836174"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.jmb.2007.04.039",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047892067"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1098/rstb.1995.0040",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051778330"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0402684101",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051972777"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1010171013669",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053464697",
"https://doi.org/10.1023/a:1010171013669"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi000543l",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055158995"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi000543l",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055158995"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi00262a003",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055167561"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi00465a026",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055177316"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi048733+",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055199324"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi048733+",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055199324"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi2006674",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055204267"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1021/bi2006674",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1055204267"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.2976/1.2976660",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1070933996"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1083248421",
"type": "CreativeWork"
}
],
"datePublished": "2018-01",
"datePublishedReg": "2018-01-01",
"description": "Studying the effect of cysteine bridges on different energy levels of multistage folding proteins will enable a better understanding of the process of folding and functioning of globular proteins. In particular, it will create prospects for directed change in the stability and rate of protein folding. In this work, using the method of differential scanning microcalorimetry, we have studied the effect of three cysteine bridges introduced in different structural elements of the green fluorescent protein on the denaturation enthalpies, activation energies, and heat-capacity increments when this protein passes from native to intermediate and transition states. The studies have allowed us to confirm that, with this protein denaturation, the process hardly damages the structure initially, but then changes occur in the protein structure in the region of 4\u20136 beta sheets. The cysteine bridge introduced in this region decreases the hydration of the second transition state and increases the hydration of the second intermediate state during the thermal denaturation of the green fluorescent protein.",
"genre": "research_article",
"id": "sg:pub.10.1134/s0026893318010120",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1356887",
"issn": [
"0026-8933",
"1608-3245"
],
"name": "Molecular Biology",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "52"
}
],
"name": "Artificial Cysteine Bridges on the Surface of Green Fluorescent Protein Affect Hydration of Its Transition and Intermediate States",
"pagination": "75-83",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"93098fed1ebeea6f21174c7e5b1a53fec557610dca54ddcb1629d10b6680be55"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1134/s0026893318010120"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1101321604"
]
}
],
"sameAs": [
"https://doi.org/10.1134/s0026893318010120",
"https://app.dimensions.ai/details/publication/pub.1101321604"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T10:30",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000349_0000000349/records_113644_00000004.jsonl",
"type": "ScholarlyArticle",
"url": "https://link.springer.com/10.1134%2FS0026893318010120"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1134/s0026893318010120'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1134/s0026893318010120'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1134/s0026893318010120'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1134/s0026893318010120'
This table displays all metadata directly associated to this object as RDF triples.
194 TRIPLES
21 PREDICATES
62 URIs
19 LITERALS
7 BLANK NODES